data_3I7V # _entry.id 3I7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I7V pdb_00003i7v 10.2210/pdb3i7v/pdb RCSB RCSB054074 ? ? WWPDB D_1000054074 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2009-07-21 _pdbx_database_PDB_obs_spr.pdb_id 3I7V _pdbx_database_PDB_obs_spr.replace_pdb_id 2PQ1 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3I7U 'SAME PROTEIN, apo form' unspecified TargetDB aae001000158.2 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I7V _pdbx_database_status.recvd_initial_deposition_date 2009-07-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jeyakanthan, J.' 1 'Kanaujia, S.P.' 2 'Nakagawa, N.' 3 'Sekar, K.' 4 'Kuramitsu, S.' 5 'Shinkai, A.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 66 _citation.page_first 116 _citation.page_last 124 _citation.year 2010 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20124691 _citation.pdbx_database_id_DOI 10.1107/S0907444909047064 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeyakanthan, J.' 1 ? primary 'Kanaujia, S.P.' 2 ? primary 'Nishida, Y.' 3 ? primary 'Nakagawa, N.' 4 ? primary 'Praveen, S.' 5 ? primary 'Shinkai, A.' 6 ? primary 'Kuramitsu, S.' 7 ? primary 'Yokoyama, S.' 8 ? primary 'Sekar, K.' 9 ? # _cell.entry_id 3I7V _cell.length_a 35.301 _cell.length_b 59.234 _cell.length_c 67.419 _cell.angle_alpha 90.00 _cell.angle_beta 92.61 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I7V _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'AP4A hydrolase' 15785.441 2 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 2 ? ? ? ? 3 non-polymer syn "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" 836.387 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 water nat water 18.015 345 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKKEFSAGGVLFKDGEVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV KYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEKFKL ; _entity_poly.pdbx_seq_one_letter_code_can ;MKKEFSAGGVLFKDGEVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV KYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEKFKL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier aae001000158.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 GLU n 1 5 PHE n 1 6 SER n 1 7 ALA n 1 8 GLY n 1 9 GLY n 1 10 VAL n 1 11 LEU n 1 12 PHE n 1 13 LYS n 1 14 ASP n 1 15 GLY n 1 16 GLU n 1 17 VAL n 1 18 LEU n 1 19 LEU n 1 20 ILE n 1 21 LYS n 1 22 THR n 1 23 PRO n 1 24 SER n 1 25 ASN n 1 26 VAL n 1 27 TRP n 1 28 SER n 1 29 PHE n 1 30 PRO n 1 31 LYS n 1 32 GLY n 1 33 ASN n 1 34 ILE n 1 35 GLU n 1 36 PRO n 1 37 GLY n 1 38 GLU n 1 39 LYS n 1 40 PRO n 1 41 GLU n 1 42 GLU n 1 43 THR n 1 44 ALA n 1 45 VAL n 1 46 ARG n 1 47 GLU n 1 48 VAL n 1 49 TRP n 1 50 GLU n 1 51 GLU n 1 52 THR n 1 53 GLY n 1 54 VAL n 1 55 LYS n 1 56 GLY n 1 57 GLU n 1 58 ILE n 1 59 LEU n 1 60 ASP n 1 61 TYR n 1 62 ILE n 1 63 GLY n 1 64 GLU n 1 65 ILE n 1 66 HIS n 1 67 TYR n 1 68 TRP n 1 69 TYR n 1 70 THR n 1 71 LEU n 1 72 LYS n 1 73 GLY n 1 74 GLU n 1 75 ARG n 1 76 ILE n 1 77 PHE n 1 78 LYS n 1 79 THR n 1 80 VAL n 1 81 LYS n 1 82 TYR n 1 83 TYR n 1 84 LEU n 1 85 MET n 1 86 LYS n 1 87 TYR n 1 88 LYS n 1 89 GLU n 1 90 GLY n 1 91 GLU n 1 92 PRO n 1 93 ARG n 1 94 PRO n 1 95 SER n 1 96 TRP n 1 97 GLU n 1 98 VAL n 1 99 LYS n 1 100 ASP n 1 101 ALA n 1 102 LYS n 1 103 PHE n 1 104 PHE n 1 105 PRO n 1 106 ILE n 1 107 LYS n 1 108 GLU n 1 109 ALA n 1 110 LYS n 1 111 LYS n 1 112 LEU n 1 113 LEU n 1 114 LYS n 1 115 TYR n 1 116 LYS n 1 117 GLY n 1 118 ASP n 1 119 LYS n 1 120 GLU n 1 121 ILE n 1 122 PHE n 1 123 GLU n 1 124 LYS n 1 125 ALA n 1 126 LEU n 1 127 LYS n 1 128 LEU n 1 129 LYS n 1 130 GLU n 1 131 LYS n 1 132 PHE n 1 133 LYS n 1 134 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'apfA, aq_158' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain VF5 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus Vf5' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224324 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'ROSETTA(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O66548_AQUAE _struct_ref.pdbx_db_accession O66548 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKKEFSAGGVLFKDGEVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV KYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEKFKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3I7V A 1 ? 134 ? O66548 1 ? 134 ? 1 134 2 1 3I7V B 1 ? 134 ? O66548 1 ? 134 ? 1 134 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 B4P non-polymer . "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" ? 'C20 H28 N10 O19 P4' 836.387 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3I7V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.8 _exptl_crystal_grow.pdbx_details '0.1M Tris-Hcl, 25% PEG 3350, 0.2M NaCl, pH 8.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2007-03-12 _diffrn_detector.details 'Rh Coated Bent-Cyrindrical Mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (1 1 1) Double Crystal Monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3I7V _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.95 _reflns.number_obs 20328 _reflns.number_all ? _reflns.pdbx_number_measured_all 107834 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value 0.058 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 11.2 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.227 _reflns_shell.pdbx_Rsym_value 0.249 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1996 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3I7V _refine.ls_number_reflns_obs 19707 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 158515.84 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.27 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.251 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1943 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.6 _refine.aniso_B[1][1] -4.92 _refine.aniso_B[2][2] 0.89 _refine.aniso_B[3][3] 4.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 4.91 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 66.7512 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 3I7U' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3I7V _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.22 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.30 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2232 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 155 _refine_hist.number_atoms_solvent 345 _refine_hist.number_atoms_total 2732 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 35.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.31 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_asym_id ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work 2800 _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.percent_reflns_obs 91.6 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 9.6 _refine_ls_shell.number_reflns_R_free 299 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param ion.top 'X-RAY DIFFRACTION' 3 ion.param water_protin.top 'X-RAY DIFFRACTION' 4 ligand.param ligand.top # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3I7V _struct.title 'Crystal structure of AP4A hydrolase complexed with AP4A (ATP) (aq_158) from Aquifex aeolicus Vf5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I7V _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;NUDIX PROTEIN, DIADENOSINE POLYPHOSPHATE, AP4A, HYDROLASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 2 ? I N N 5 ? J N N 5 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 6 ? P N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 39 ? GLY A 53 ? LYS A 39 GLY A 53 1 ? 15 HELX_P HELX_P2 2 ILE A 106 ? LEU A 113 ? ILE A 106 LEU A 113 1 ? 8 HELX_P HELX_P3 3 TYR A 115 ? PHE A 132 ? TYR A 115 PHE A 132 1 ? 18 HELX_P HELX_P4 4 LYS B 39 ? GLY B 53 ? LYS B 39 GLY B 53 1 ? 15 HELX_P HELX_P5 5 ILE B 106 ? LEU B 113 ? ILE B 106 LEU B 113 1 ? 8 HELX_P HELX_P6 6 TYR B 115 ? PHE B 132 ? TYR B 115 PHE B 132 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 27 ? SER A 28 ? TRP A 27 SER A 28 A 2 GLU A 16 ? LYS A 21 ? GLU A 16 LYS A 21 A 3 LYS A 2 ? LYS A 13 ? LYS A 2 LYS A 13 A 4 GLU A 74 ? GLU A 89 ? GLU A 74 GLU A 89 A 5 LYS A 55 ? LEU A 71 ? LYS A 55 LEU A 71 B 1 LYS A 31 ? ASN A 33 ? LYS A 31 ASN A 33 B 2 LYS A 2 ? LYS A 13 ? LYS A 2 LYS A 13 B 3 GLU A 16 ? LYS A 21 ? GLU A 16 LYS A 21 B 4 ASP A 100 ? PRO A 105 ? ASP A 100 PRO A 105 C 1 TRP B 27 ? SER B 28 ? TRP B 27 SER B 28 C 2 GLU B 16 ? LYS B 21 ? GLU B 16 LYS B 21 C 3 LYS B 2 ? LYS B 13 ? LYS B 2 LYS B 13 C 4 GLU B 74 ? GLU B 89 ? GLU B 74 GLU B 89 C 5 LYS B 55 ? LEU B 71 ? LYS B 55 LEU B 71 D 1 LYS B 31 ? ASN B 33 ? LYS B 31 ASN B 33 D 2 LYS B 2 ? LYS B 13 ? LYS B 2 LYS B 13 D 3 GLU B 16 ? LYS B 21 ? GLU B 16 LYS B 21 D 4 ASP B 100 ? PRO B 105 ? ASP B 100 PRO B 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 28 ? O SER A 28 N ILE A 20 ? N ILE A 20 A 2 3 O LEU A 18 ? O LEU A 18 N LEU A 11 ? N LEU A 11 A 3 4 N LYS A 2 ? N LYS A 2 O PHE A 77 ? O PHE A 77 A 4 5 O ILE A 76 ? O ILE A 76 N TYR A 69 ? N TYR A 69 B 1 2 O GLY A 32 ? O GLY A 32 N ALA A 7 ? N ALA A 7 B 2 3 N LEU A 11 ? N LEU A 11 O LEU A 18 ? O LEU A 18 B 3 4 N LEU A 19 ? N LEU A 19 O LYS A 102 ? O LYS A 102 C 1 2 O SER B 28 ? O SER B 28 N ILE B 20 ? N ILE B 20 C 2 3 O GLU B 16 ? O GLU B 16 N LYS B 13 ? N LYS B 13 C 3 4 N SER B 6 ? N SER B 6 O THR B 79 ? O THR B 79 C 4 5 O LEU B 84 ? O LEU B 84 N LEU B 59 ? N LEU B 59 D 1 2 O GLY B 32 ? O GLY B 32 N ALA B 7 ? N ALA B 7 D 2 3 N LYS B 13 ? N LYS B 13 O GLU B 16 ? O GLU B 16 D 3 4 N VAL B 17 ? N VAL B 17 O PHE B 104 ? O PHE B 104 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ATP 135 ? 17 'BINDING SITE FOR RESIDUE ATP A 135' AC2 Software A B4P 136 ? 17 'BINDING SITE FOR RESIDUE B4P A 136' AC3 Software A EDO 137 ? 4 'BINDING SITE FOR RESIDUE EDO A 137' AC4 Software A EDO 138 ? 6 'BINDING SITE FOR RESIDUE EDO A 138' AC5 Software A EDO 139 ? 4 'BINDING SITE FOR RESIDUE EDO A 139' AC6 Software B ATP 135 ? 17 'BINDING SITE FOR RESIDUE ATP B 135' AC7 Software B GOL 136 ? 3 'BINDING SITE FOR RESIDUE GOL B 136' AC8 Software B GOL 137 ? 3 'BINDING SITE FOR RESIDUE GOL B 137' AC9 Software B EDO 138 ? 4 'BINDING SITE FOR RESIDUE EDO B 138' BC1 Software B EDO 139 ? 5 'BINDING SITE FOR RESIDUE EDO B 139' BC2 Software B EDO 140 ? 4 'BINDING SITE FOR RESIDUE EDO B 140' BC3 Software B EDO 141 ? 7 'BINDING SITE FOR RESIDUE EDO B 141' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 SER A 6 ? SER A 6 . ? 1_555 ? 2 AC1 17 LYS A 31 ? LYS A 31 . ? 1_555 ? 3 AC1 17 TYR A 67 ? TYR A 67 . ? 1_555 ? 4 AC1 17 TYR A 69 ? TYR A 69 . ? 1_555 ? 5 AC1 17 LYS A 78 ? LYS A 78 . ? 1_555 ? 6 AC1 17 TYR A 115 ? TYR A 115 . ? 1_555 ? 7 AC1 17 EDO F . ? EDO A 138 . ? 1_555 ? 8 AC1 17 HOH O . ? HOH A 273 . ? 1_555 ? 9 AC1 17 HOH O . ? HOH A 274 . ? 1_555 ? 10 AC1 17 HOH O . ? HOH A 303 . ? 1_555 ? 11 AC1 17 HOH O . ? HOH A 305 . ? 1_555 ? 12 AC1 17 HOH O . ? HOH A 318 . ? 1_555 ? 13 AC1 17 HOH O . ? HOH A 512 . ? 1_555 ? 14 AC1 17 HOH O . ? HOH A 515 . ? 1_555 ? 15 AC1 17 LYS B 72 ? LYS B 72 . ? 1_655 ? 16 AC1 17 HOH P . ? HOH B 477 . ? 1_655 ? 17 AC1 17 HOH P . ? HOH B 478 . ? 1_655 ? 18 AC2 17 LYS A 2 ? LYS A 2 . ? 1_555 ? 19 AC2 17 LYS A 3 ? LYS A 3 . ? 1_555 ? 20 AC2 17 PHE A 5 ? PHE A 5 . ? 1_555 ? 21 AC2 17 HOH O . ? HOH A 298 . ? 1_555 ? 22 AC2 17 HOH O . ? HOH A 424 . ? 1_555 ? 23 AC2 17 HOH O . ? HOH A 425 . ? 1_555 ? 24 AC2 17 HOH O . ? HOH A 504 . ? 1_555 ? 25 AC2 17 HOH O . ? HOH A 505 . ? 1_555 ? 26 AC2 17 HOH O . ? HOH A 507 . ? 1_555 ? 27 AC2 17 HOH O . ? HOH A 509 . ? 1_555 ? 28 AC2 17 HOH O . ? HOH A 540 . ? 1_555 ? 29 AC2 17 MET B 1 ? MET B 1 . ? 1_555 ? 30 AC2 17 LYS B 2 ? LYS B 2 . ? 1_555 ? 31 AC2 17 LYS B 3 ? LYS B 3 . ? 1_555 ? 32 AC2 17 PHE B 5 ? PHE B 5 . ? 1_555 ? 33 AC2 17 LYS B 81 ? LYS B 81 . ? 1_555 ? 34 AC2 17 HOH P . ? HOH B 282 . ? 1_555 ? 35 AC3 4 TYR A 67 ? TYR A 67 . ? 1_555 ? 36 AC3 4 TRP A 68 ? TRP A 68 . ? 1_555 ? 37 AC3 4 THR B 70 ? THR B 70 . ? 1_655 ? 38 AC3 4 GLY B 73 ? GLY B 73 . ? 1_655 ? 39 AC4 6 SER A 28 ? SER A 28 . ? 1_555 ? 40 AC4 6 LYS A 31 ? LYS A 31 . ? 1_555 ? 41 AC4 6 ILE A 65 ? ILE A 65 . ? 1_555 ? 42 AC4 6 TYR A 82 ? TYR A 82 . ? 1_555 ? 43 AC4 6 ASP A 118 ? ASP A 118 . ? 1_555 ? 44 AC4 6 ATP C . ? ATP A 135 . ? 1_555 ? 45 AC5 4 GLU A 42 ? GLU A 42 . ? 1_655 ? 46 AC5 4 LEU A 112 ? LEU A 112 . ? 1_555 ? 47 AC5 4 HOH O . ? HOH A 263 . ? 1_555 ? 48 AC5 4 HOH O . ? HOH A 377 . ? 1_655 ? 49 AC6 17 LYS A 72 ? LYS A 72 . ? 1_455 ? 50 AC6 17 HOH O . ? HOH A 334 . ? 1_455 ? 51 AC6 17 HOH O . ? HOH A 335 . ? 1_455 ? 52 AC6 17 SER B 6 ? SER B 6 . ? 1_555 ? 53 AC6 17 LYS B 31 ? LYS B 31 . ? 1_555 ? 54 AC6 17 TYR B 67 ? TYR B 67 . ? 1_555 ? 55 AC6 17 TYR B 69 ? TYR B 69 . ? 1_555 ? 56 AC6 17 LYS B 78 ? LYS B 78 . ? 1_555 ? 57 AC6 17 TYR B 115 ? TYR B 115 . ? 1_555 ? 58 AC6 17 EDO K . ? EDO B 138 . ? 1_555 ? 59 AC6 17 EDO N . ? EDO B 141 . ? 1_555 ? 60 AC6 17 HOH P . ? HOH B 216 . ? 1_555 ? 61 AC6 17 HOH P . ? HOH B 248 . ? 1_555 ? 62 AC6 17 HOH P . ? HOH B 249 . ? 1_555 ? 63 AC6 17 HOH P . ? HOH B 251 . ? 1_555 ? 64 AC6 17 HOH P . ? HOH B 253 . ? 1_555 ? 65 AC6 17 HOH P . ? HOH B 513 . ? 1_555 ? 66 AC7 3 GLU B 41 ? GLU B 41 . ? 1_555 ? 67 AC7 3 LYS B 81 ? LYS B 81 . ? 1_555 ? 68 AC7 3 TYR B 83 ? TYR B 83 . ? 1_555 ? 69 AC8 3 GLU B 41 ? GLU B 41 . ? 1_555 ? 70 AC8 3 ILE B 58 ? ILE B 58 . ? 1_555 ? 71 AC8 3 ASP B 60 ? ASP B 60 . ? 1_555 ? 72 AC9 4 THR B 22 ? THR B 22 . ? 1_555 ? 73 AC9 4 SER B 24 ? SER B 24 . ? 1_555 ? 74 AC9 4 TYR B 115 ? TYR B 115 . ? 1_555 ? 75 AC9 4 ATP H . ? ATP B 135 . ? 1_555 ? 76 BC1 5 GLY A 73 ? GLY A 73 . ? 1_455 ? 77 BC1 5 ARG A 75 ? ARG A 75 . ? 1_455 ? 78 BC1 5 TYR B 67 ? TYR B 67 . ? 1_555 ? 79 BC1 5 TRP B 68 ? TRP B 68 . ? 1_555 ? 80 BC1 5 HOH P . ? HOH B 480 . ? 1_555 ? 81 BC2 4 GLU B 41 ? GLU B 41 . ? 1_455 ? 82 BC2 4 GLU B 42 ? GLU B 42 . ? 1_455 ? 83 BC2 4 LYS B 114 ? LYS B 114 . ? 1_555 ? 84 BC2 4 LYS B 119 ? LYS B 119 . ? 1_555 ? 85 BC3 7 SER B 28 ? SER B 28 . ? 1_555 ? 86 BC3 7 LYS B 31 ? LYS B 31 . ? 1_555 ? 87 BC3 7 ILE B 65 ? ILE B 65 . ? 1_555 ? 88 BC3 7 TYR B 82 ? TYR B 82 . ? 1_555 ? 89 BC3 7 TYR B 115 ? TYR B 115 . ? 1_555 ? 90 BC3 7 ASP B 118 ? ASP B 118 . ? 1_555 ? 91 BC3 7 ATP H . ? ATP B 135 . ? 1_555 ? # _database_PDB_matrix.entry_id 3I7V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3I7V _atom_sites.fract_transf_matrix[1][1] 0.028328 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001293 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016882 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 TRP 68 68 68 TRP TRP A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 LEU 134 134 134 LEU LEU A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 PHE 12 12 12 PHE PHE B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 LYS 21 21 21 LYS LYS B . n B 1 22 THR 22 22 22 THR THR B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 SER 24 24 24 SER SER B . n B 1 25 ASN 25 25 25 ASN ASN B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 TRP 27 27 27 TRP TRP B . n B 1 28 SER 28 28 28 SER SER B . n B 1 29 PHE 29 29 29 PHE PHE B . n B 1 30 PRO 30 30 30 PRO PRO B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 ASN 33 33 33 ASN ASN B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 PRO 36 36 36 PRO PRO B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 TRP 49 49 49 TRP TRP B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 THR 52 52 52 THR THR B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 TYR 61 61 61 TYR TYR B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 ILE 65 65 65 ILE ILE B . n B 1 66 HIS 66 66 66 HIS HIS B . n B 1 67 TYR 67 67 67 TYR TYR B . n B 1 68 TRP 68 68 68 TRP TRP B . n B 1 69 TYR 69 69 69 TYR TYR B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 LYS 72 72 72 LYS LYS B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 ARG 75 75 75 ARG ARG B . n B 1 76 ILE 76 76 76 ILE ILE B . n B 1 77 PHE 77 77 77 PHE PHE B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 VAL 80 80 80 VAL VAL B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 TYR 82 82 82 TYR TYR B . n B 1 83 TYR 83 83 83 TYR TYR B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 MET 85 85 85 MET MET B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 TYR 87 87 87 TYR TYR B . n B 1 88 LYS 88 88 88 LYS LYS B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 PRO 92 92 92 PRO PRO B . n B 1 93 ARG 93 93 93 ARG ARG B . n B 1 94 PRO 94 94 94 PRO PRO B . n B 1 95 SER 95 95 95 SER SER B . n B 1 96 TRP 96 96 96 TRP TRP B . n B 1 97 GLU 97 97 97 GLU GLU B . n B 1 98 VAL 98 98 98 VAL VAL B . n B 1 99 LYS 99 99 99 LYS LYS B . n B 1 100 ASP 100 100 100 ASP ASP B . n B 1 101 ALA 101 101 101 ALA ALA B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 PHE 103 103 103 PHE PHE B . n B 1 104 PHE 104 104 104 PHE PHE B . n B 1 105 PRO 105 105 105 PRO PRO B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 GLU 108 108 108 GLU GLU B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 LYS 116 116 116 LYS LYS B . n B 1 117 GLY 117 117 117 GLY GLY B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 LYS 119 119 119 LYS LYS B . n B 1 120 GLU 120 120 120 GLU GLU B . n B 1 121 ILE 121 121 121 ILE ILE B . n B 1 122 PHE 122 122 122 PHE PHE B . n B 1 123 GLU 123 123 123 GLU GLU B . n B 1 124 LYS 124 124 124 LYS LYS B . n B 1 125 ALA 125 125 125 ALA ALA B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 LYS 127 127 127 LYS LYS B . n B 1 128 LEU 128 128 128 LEU LEU B . n B 1 129 LYS 129 129 129 LYS LYS B . n B 1 130 GLU 130 130 130 GLU GLU B . n B 1 131 LYS 131 131 131 LYS LYS B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 LYS 133 133 133 LYS LYS B . n B 1 134 LEU 134 134 134 LEU LEU B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP 1 135 1 ATP ATP A . D 3 B4P 1 136 3 B4P B4P A . E 4 EDO 1 137 10 EDO EDO A . F 4 EDO 1 138 11 EDO EDO A . G 4 EDO 1 139 12 EDO EDO A . H 2 ATP 1 135 2 ATP ATP B . I 5 GOL 1 136 4 GOL GOL B . J 5 GOL 1 137 5 GOL GOL B . K 4 EDO 1 138 6 EDO EDO B . L 4 EDO 1 139 7 EDO EDO B . M 4 EDO 1 140 8 EDO EDO B . N 4 EDO 1 141 9 EDO EDO B . O 6 HOH 1 259 259 HOH HOH A . O 6 HOH 2 260 260 HOH HOH A . O 6 HOH 3 261 261 HOH HOH A . O 6 HOH 4 262 262 HOH HOH A . O 6 HOH 5 263 263 HOH HOH A . O 6 HOH 6 264 264 HOH HOH A . O 6 HOH 7 265 265 HOH HOH A . O 6 HOH 8 266 266 HOH HOH A . O 6 HOH 9 267 267 HOH HOH A . O 6 HOH 10 268 268 HOH HOH A . O 6 HOH 11 269 269 HOH HOH A . O 6 HOH 12 270 270 HOH HOH A . O 6 HOH 13 271 271 HOH HOH A . O 6 HOH 14 272 272 HOH HOH A . O 6 HOH 15 273 273 HOH HOH A . O 6 HOH 16 274 274 HOH HOH A . O 6 HOH 17 275 275 HOH HOH A . O 6 HOH 18 276 276 HOH HOH A . O 6 HOH 19 277 277 HOH HOH A . O 6 HOH 20 278 278 HOH HOH A . O 6 HOH 21 279 279 HOH HOH A . O 6 HOH 22 280 280 HOH HOH A . O 6 HOH 23 281 281 HOH HOH A . O 6 HOH 24 283 283 HOH HOH A . O 6 HOH 25 284 284 HOH HOH A . O 6 HOH 26 285 285 HOH HOH A . O 6 HOH 27 286 286 HOH HOH A . O 6 HOH 28 287 287 HOH HOH A . O 6 HOH 29 288 288 HOH HOH A . O 6 HOH 30 289 289 HOH HOH A . O 6 HOH 31 290 290 HOH HOH A . O 6 HOH 32 291 291 HOH HOH A . O 6 HOH 33 292 292 HOH HOH A . O 6 HOH 34 293 293 HOH HOH A . O 6 HOH 35 294 294 HOH HOH A . O 6 HOH 36 295 295 HOH HOH A . O 6 HOH 37 296 296 HOH HOH A . O 6 HOH 38 297 297 HOH HOH A . O 6 HOH 39 298 298 HOH HOH A . O 6 HOH 40 299 299 HOH HOH A . O 6 HOH 41 300 300 HOH HOH A . O 6 HOH 42 301 301 HOH HOH A . O 6 HOH 43 302 302 HOH HOH A . O 6 HOH 44 303 303 HOH HOH A . O 6 HOH 45 304 304 HOH HOH A . O 6 HOH 46 305 305 HOH HOH A . O 6 HOH 47 307 307 HOH HOH A . O 6 HOH 48 308 308 HOH HOH A . O 6 HOH 49 309 309 HOH HOH A . O 6 HOH 50 310 310 HOH HOH A . O 6 HOH 51 311 311 HOH HOH A . O 6 HOH 52 312 312 HOH HOH A . O 6 HOH 53 313 313 HOH HOH A . O 6 HOH 54 314 314 HOH HOH A . O 6 HOH 55 315 315 HOH HOH A . O 6 HOH 56 316 316 HOH HOH A . O 6 HOH 57 317 317 HOH HOH A . O 6 HOH 58 318 318 HOH HOH A . O 6 HOH 59 319 319 HOH HOH A . O 6 HOH 60 320 320 HOH HOH A . O 6 HOH 61 321 321 HOH HOH A . O 6 HOH 62 322 322 HOH HOH A . O 6 HOH 63 323 323 HOH HOH A . O 6 HOH 64 324 324 HOH HOH A . O 6 HOH 65 325 325 HOH HOH A . O 6 HOH 66 326 326 HOH HOH A . O 6 HOH 67 327 327 HOH HOH A . O 6 HOH 68 328 328 HOH HOH A . O 6 HOH 69 329 329 HOH HOH A . O 6 HOH 70 330 330 HOH HOH A . O 6 HOH 71 331 331 HOH HOH A . O 6 HOH 72 333 333 HOH HOH A . O 6 HOH 73 334 334 HOH HOH A . O 6 HOH 74 335 335 HOH HOH A . O 6 HOH 75 336 336 HOH HOH A . O 6 HOH 76 337 337 HOH HOH A . O 6 HOH 77 339 339 HOH HOH A . O 6 HOH 78 340 340 HOH HOH A . O 6 HOH 79 353 353 HOH HOH A . O 6 HOH 80 355 355 HOH HOH A . O 6 HOH 81 356 356 HOH HOH A . O 6 HOH 82 357 357 HOH HOH A . O 6 HOH 83 358 358 HOH HOH A . O 6 HOH 84 359 359 HOH HOH A . O 6 HOH 85 360 360 HOH HOH A . O 6 HOH 86 369 369 HOH HOH A . O 6 HOH 87 377 377 HOH HOH A . O 6 HOH 88 378 378 HOH HOH A . O 6 HOH 89 379 379 HOH HOH A . O 6 HOH 90 380 380 HOH HOH A . O 6 HOH 91 381 381 HOH HOH A . O 6 HOH 92 382 382 HOH HOH A . O 6 HOH 93 383 383 HOH HOH A . O 6 HOH 94 384 384 HOH HOH A . O 6 HOH 95 385 385 HOH HOH A . O 6 HOH 96 389 389 HOH HOH A . O 6 HOH 97 390 390 HOH HOH A . O 6 HOH 98 391 391 HOH HOH A . O 6 HOH 99 392 392 HOH HOH A . O 6 HOH 100 393 393 HOH HOH A . O 6 HOH 101 407 407 HOH HOH A . O 6 HOH 102 408 408 HOH HOH A . O 6 HOH 103 409 409 HOH HOH A . O 6 HOH 104 410 410 HOH HOH A . O 6 HOH 105 415 415 HOH HOH A . O 6 HOH 106 416 416 HOH HOH A . O 6 HOH 107 417 417 HOH HOH A . O 6 HOH 108 418 418 HOH HOH A . O 6 HOH 109 419 419 HOH HOH A . O 6 HOH 110 424 424 HOH HOH A . O 6 HOH 111 425 425 HOH HOH A . O 6 HOH 112 426 426 HOH HOH A . O 6 HOH 113 428 428 HOH HOH A . O 6 HOH 114 429 429 HOH HOH A . O 6 HOH 115 430 430 HOH HOH A . O 6 HOH 116 431 431 HOH HOH A . O 6 HOH 117 432 432 HOH HOH A . O 6 HOH 118 433 433 HOH HOH A . O 6 HOH 119 434 434 HOH HOH A . O 6 HOH 120 435 435 HOH HOH A . O 6 HOH 121 436 436 HOH HOH A . O 6 HOH 122 457 457 HOH HOH A . O 6 HOH 123 458 458 HOH HOH A . O 6 HOH 124 463 463 HOH HOH A . O 6 HOH 125 466 466 HOH HOH A . O 6 HOH 126 468 468 HOH HOH A . O 6 HOH 127 469 469 HOH HOH A . O 6 HOH 128 470 470 HOH HOH A . O 6 HOH 129 474 474 HOH HOH A . O 6 HOH 130 475 475 HOH HOH A . O 6 HOH 131 476 476 HOH HOH A . O 6 HOH 132 479 479 HOH HOH A . O 6 HOH 133 481 481 HOH HOH A . O 6 HOH 134 489 489 HOH HOH A . O 6 HOH 135 490 490 HOH HOH A . O 6 HOH 136 491 491 HOH HOH A . O 6 HOH 137 493 493 HOH HOH A . O 6 HOH 138 494 494 HOH HOH A . O 6 HOH 139 499 499 HOH HOH A . O 6 HOH 140 500 500 HOH HOH A . O 6 HOH 141 501 501 HOH HOH A . O 6 HOH 142 502 502 HOH HOH A . O 6 HOH 143 503 503 HOH HOH A . O 6 HOH 144 504 504 HOH HOH A . O 6 HOH 145 505 505 HOH HOH A . O 6 HOH 146 506 506 HOH HOH A . O 6 HOH 147 507 507 HOH HOH A . O 6 HOH 148 508 508 HOH HOH A . O 6 HOH 149 509 509 HOH HOH A . O 6 HOH 150 510 510 HOH HOH A . O 6 HOH 151 512 512 HOH HOH A . O 6 HOH 152 514 514 HOH HOH A . O 6 HOH 153 515 515 HOH HOH A . O 6 HOH 154 516 516 HOH HOH A . O 6 HOH 155 517 517 HOH HOH A . O 6 HOH 156 518 518 HOH HOH A . O 6 HOH 157 519 519 HOH HOH A . O 6 HOH 158 520 520 HOH HOH A . O 6 HOH 159 521 521 HOH HOH A . O 6 HOH 160 522 522 HOH HOH A . O 6 HOH 161 523 523 HOH HOH A . O 6 HOH 162 528 528 HOH HOH A . O 6 HOH 163 530 530 HOH HOH A . O 6 HOH 164 531 531 HOH HOH A . O 6 HOH 165 540 540 HOH HOH A . O 6 HOH 166 542 542 HOH HOH A . O 6 HOH 167 544 544 HOH HOH A . O 6 HOH 168 545 545 HOH HOH A . P 6 HOH 1 201 201 HOH HOH B . P 6 HOH 2 202 202 HOH HOH B . P 6 HOH 3 203 203 HOH HOH B . P 6 HOH 4 204 204 HOH HOH B . P 6 HOH 5 205 205 HOH HOH B . P 6 HOH 6 206 206 HOH HOH B . P 6 HOH 7 207 207 HOH HOH B . P 6 HOH 8 208 208 HOH HOH B . P 6 HOH 9 209 209 HOH HOH B . P 6 HOH 10 210 210 HOH HOH B . P 6 HOH 11 211 211 HOH HOH B . P 6 HOH 12 212 212 HOH HOH B . P 6 HOH 13 213 213 HOH HOH B . P 6 HOH 14 214 214 HOH HOH B . P 6 HOH 15 215 215 HOH HOH B . P 6 HOH 16 216 216 HOH HOH B . P 6 HOH 17 217 217 HOH HOH B . P 6 HOH 18 218 218 HOH HOH B . P 6 HOH 19 219 219 HOH HOH B . P 6 HOH 20 220 220 HOH HOH B . P 6 HOH 21 221 221 HOH HOH B . P 6 HOH 22 222 222 HOH HOH B . P 6 HOH 23 223 223 HOH HOH B . P 6 HOH 24 224 224 HOH HOH B . P 6 HOH 25 225 225 HOH HOH B . P 6 HOH 26 226 226 HOH HOH B . P 6 HOH 27 227 227 HOH HOH B . P 6 HOH 28 228 228 HOH HOH B . P 6 HOH 29 229 229 HOH HOH B . P 6 HOH 30 230 230 HOH HOH B . P 6 HOH 31 231 231 HOH HOH B . P 6 HOH 32 232 232 HOH HOH B . P 6 HOH 33 233 233 HOH HOH B . P 6 HOH 34 234 234 HOH HOH B . P 6 HOH 35 235 235 HOH HOH B . P 6 HOH 36 236 236 HOH HOH B . P 6 HOH 37 237 237 HOH HOH B . P 6 HOH 38 238 238 HOH HOH B . P 6 HOH 39 239 239 HOH HOH B . P 6 HOH 40 240 240 HOH HOH B . P 6 HOH 41 241 241 HOH HOH B . P 6 HOH 42 242 242 HOH HOH B . P 6 HOH 43 243 243 HOH HOH B . P 6 HOH 44 244 244 HOH HOH B . P 6 HOH 45 245 245 HOH HOH B . P 6 HOH 46 246 246 HOH HOH B . P 6 HOH 47 247 247 HOH HOH B . P 6 HOH 48 248 248 HOH HOH B . P 6 HOH 49 249 249 HOH HOH B . P 6 HOH 50 250 250 HOH HOH B . P 6 HOH 51 251 251 HOH HOH B . P 6 HOH 52 252 252 HOH HOH B . P 6 HOH 53 253 253 HOH HOH B . P 6 HOH 54 254 254 HOH HOH B . P 6 HOH 55 255 255 HOH HOH B . P 6 HOH 56 256 256 HOH HOH B . P 6 HOH 57 257 257 HOH HOH B . P 6 HOH 58 258 258 HOH HOH B . P 6 HOH 59 282 282 HOH HOH B . P 6 HOH 60 306 306 HOH HOH B . P 6 HOH 61 332 332 HOH HOH B . P 6 HOH 62 338 338 HOH HOH B . P 6 HOH 63 341 341 HOH HOH B . P 6 HOH 64 342 342 HOH HOH B . P 6 HOH 65 343 343 HOH HOH B . P 6 HOH 66 344 344 HOH HOH B . P 6 HOH 67 345 345 HOH HOH B . P 6 HOH 68 346 346 HOH HOH B . P 6 HOH 69 347 347 HOH HOH B . P 6 HOH 70 348 348 HOH HOH B . P 6 HOH 71 349 349 HOH HOH B . P 6 HOH 72 350 350 HOH HOH B . P 6 HOH 73 351 351 HOH HOH B . P 6 HOH 74 352 352 HOH HOH B . P 6 HOH 75 354 354 HOH HOH B . P 6 HOH 76 361 361 HOH HOH B . P 6 HOH 77 362 362 HOH HOH B . P 6 HOH 78 363 363 HOH HOH B . P 6 HOH 79 364 364 HOH HOH B . P 6 HOH 80 365 365 HOH HOH B . P 6 HOH 81 366 366 HOH HOH B . P 6 HOH 82 367 367 HOH HOH B . P 6 HOH 83 368 368 HOH HOH B . P 6 HOH 84 370 370 HOH HOH B . P 6 HOH 85 371 371 HOH HOH B . P 6 HOH 86 372 372 HOH HOH B . P 6 HOH 87 373 373 HOH HOH B . P 6 HOH 88 374 374 HOH HOH B . P 6 HOH 89 375 375 HOH HOH B . P 6 HOH 90 376 376 HOH HOH B . P 6 HOH 91 386 386 HOH HOH B . P 6 HOH 92 387 387 HOH HOH B . P 6 HOH 93 388 388 HOH HOH B . P 6 HOH 94 394 394 HOH HOH B . P 6 HOH 95 395 395 HOH HOH B . P 6 HOH 96 396 396 HOH HOH B . P 6 HOH 97 397 397 HOH HOH B . P 6 HOH 98 398 398 HOH HOH B . P 6 HOH 99 399 399 HOH HOH B . P 6 HOH 100 400 400 HOH HOH B . P 6 HOH 101 401 401 HOH HOH B . P 6 HOH 102 402 402 HOH HOH B . P 6 HOH 103 403 403 HOH HOH B . P 6 HOH 104 404 404 HOH HOH B . P 6 HOH 105 405 405 HOH HOH B . P 6 HOH 106 406 406 HOH HOH B . P 6 HOH 107 411 411 HOH HOH B . P 6 HOH 108 412 412 HOH HOH B . P 6 HOH 109 413 413 HOH HOH B . P 6 HOH 110 414 414 HOH HOH B . P 6 HOH 111 420 420 HOH HOH B . P 6 HOH 112 421 421 HOH HOH B . P 6 HOH 113 422 422 HOH HOH B . P 6 HOH 114 423 423 HOH HOH B . P 6 HOH 115 427 427 HOH HOH B . P 6 HOH 116 437 437 HOH HOH B . P 6 HOH 117 438 438 HOH HOH B . P 6 HOH 118 439 439 HOH HOH B . P 6 HOH 119 440 440 HOH HOH B . P 6 HOH 120 441 441 HOH HOH B . P 6 HOH 121 442 442 HOH HOH B . P 6 HOH 122 443 443 HOH HOH B . P 6 HOH 123 444 444 HOH HOH B . P 6 HOH 124 445 445 HOH HOH B . P 6 HOH 125 446 446 HOH HOH B . P 6 HOH 126 447 447 HOH HOH B . P 6 HOH 127 448 448 HOH HOH B . P 6 HOH 128 449 449 HOH HOH B . P 6 HOH 129 450 450 HOH HOH B . P 6 HOH 130 451 451 HOH HOH B . P 6 HOH 131 452 452 HOH HOH B . P 6 HOH 132 453 453 HOH HOH B . P 6 HOH 133 454 454 HOH HOH B . P 6 HOH 134 455 455 HOH HOH B . P 6 HOH 135 456 456 HOH HOH B . P 6 HOH 136 459 459 HOH HOH B . P 6 HOH 137 460 460 HOH HOH B . P 6 HOH 138 461 461 HOH HOH B . P 6 HOH 139 462 462 HOH HOH B . P 6 HOH 140 464 464 HOH HOH B . P 6 HOH 141 465 465 HOH HOH B . P 6 HOH 142 467 467 HOH HOH B . P 6 HOH 143 471 471 HOH HOH B . P 6 HOH 144 472 472 HOH HOH B . P 6 HOH 145 473 473 HOH HOH B . P 6 HOH 146 477 477 HOH HOH B . P 6 HOH 147 478 478 HOH HOH B . P 6 HOH 148 480 480 HOH HOH B . P 6 HOH 149 482 482 HOH HOH B . P 6 HOH 150 483 483 HOH HOH B . P 6 HOH 151 484 484 HOH HOH B . P 6 HOH 152 485 485 HOH HOH B . P 6 HOH 153 486 486 HOH HOH B . P 6 HOH 154 487 487 HOH HOH B . P 6 HOH 155 488 488 HOH HOH B . P 6 HOH 156 492 492 HOH HOH B . P 6 HOH 157 495 495 HOH HOH B . P 6 HOH 158 496 496 HOH HOH B . P 6 HOH 159 497 497 HOH HOH B . P 6 HOH 160 498 498 HOH HOH B . P 6 HOH 161 511 511 HOH HOH B . P 6 HOH 162 513 513 HOH HOH B . P 6 HOH 163 524 524 HOH HOH B . P 6 HOH 164 525 525 HOH HOH B . P 6 HOH 165 526 526 HOH HOH B . P 6 HOH 166 527 527 HOH HOH B . P 6 HOH 167 529 529 HOH HOH B . P 6 HOH 168 532 532 HOH HOH B . P 6 HOH 169 533 533 HOH HOH B . P 6 HOH 170 534 534 HOH HOH B . P 6 HOH 171 535 535 HOH HOH B . P 6 HOH 172 536 536 HOH HOH B . P 6 HOH 173 537 537 HOH HOH B . P 6 HOH 174 538 538 HOH HOH B . P 6 HOH 175 539 539 HOH HOH B . P 6 HOH 176 541 541 HOH HOH B . P 6 HOH 177 543 543 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,O 2 1 B,H,I,J,K,L,M,N,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 14 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 51.53 _pdbx_validate_torsion.psi -135.28 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 ATP PG P N N 74 ATP O1G O N N 75 ATP O2G O N N 76 ATP O3G O N N 77 ATP PB P N R 78 ATP O1B O N N 79 ATP O2B O N N 80 ATP O3B O N N 81 ATP PA P N R 82 ATP O1A O N N 83 ATP O2A O N N 84 ATP O3A O N N 85 ATP "O5'" O N N 86 ATP "C5'" C N N 87 ATP "C4'" C N R 88 ATP "O4'" O N N 89 ATP "C3'" C N S 90 ATP "O3'" O N N 91 ATP "C2'" C N R 92 ATP "O2'" O N N 93 ATP "C1'" C N R 94 ATP N9 N Y N 95 ATP C8 C Y N 96 ATP N7 N Y N 97 ATP C5 C Y N 98 ATP C6 C Y N 99 ATP N6 N N N 100 ATP N1 N Y N 101 ATP C2 C Y N 102 ATP N3 N Y N 103 ATP C4 C Y N 104 ATP HOG2 H N N 105 ATP HOG3 H N N 106 ATP HOB2 H N N 107 ATP HOA2 H N N 108 ATP "H5'1" H N N 109 ATP "H5'2" H N N 110 ATP "H4'" H N N 111 ATP "H3'" H N N 112 ATP "HO3'" H N N 113 ATP "H2'" H N N 114 ATP "HO2'" H N N 115 ATP "H1'" H N N 116 ATP H8 H N N 117 ATP HN61 H N N 118 ATP HN62 H N N 119 ATP H2 H N N 120 B4P PA P N S 121 B4P O1A O N N 122 B4P O2A O N N 123 B4P O3A O N N 124 B4P PB P N S 125 B4P O1B O N N 126 B4P O2B O N N 127 B4P O3B O N N 128 B4P PG P N S 129 B4P O1G O N N 130 B4P O2G O N N 131 B4P O3G O N N 132 B4P PD P N S 133 B4P O1D O N N 134 B4P O2D O N N 135 B4P O5E O N N 136 B4P C5E C N N 137 B4P C4E C N R 138 B4P O4E O N N 139 B4P C3E C N S 140 B4P O3E O N N 141 B4P C2E C N R 142 B4P O2E O N N 143 B4P C1E C N R 144 B4P N9A N Y N 145 B4P C8A C Y N 146 B4P N7A N Y N 147 B4P C5A C Y N 148 B4P C6A C Y N 149 B4P N6A N N N 150 B4P N1A N Y N 151 B4P C2A C Y N 152 B4P N3A N Y N 153 B4P C4A C Y N 154 B4P O5F O N N 155 B4P C5F C N N 156 B4P C4F C N R 157 B4P O4F O N N 158 B4P C3F C N S 159 B4P O3F O N N 160 B4P C2F C N R 161 B4P O2F O N N 162 B4P C1F C N R 163 B4P N9B N Y N 164 B4P C8B C Y N 165 B4P N7B N Y N 166 B4P C5B C Y N 167 B4P C6B C Y N 168 B4P N6B N N N 169 B4P N1B N Y N 170 B4P C2B C Y N 171 B4P N3B N Y N 172 B4P C4B C Y N 173 B4P HOA2 H N N 174 B4P HOB2 H N N 175 B4P HOG2 H N N 176 B4P HOD2 H N N 177 B4P H51A H N N 178 B4P H52A H N N 179 B4P H4E H N N 180 B4P H3E H N N 181 B4P HO3A H N N 182 B4P H2E H N N 183 B4P HO2A H N N 184 B4P H1E H N N 185 B4P H8A H N N 186 B4P H61A H N N 187 B4P H62A H N N 188 B4P H2A H N N 189 B4P H51B H N N 190 B4P H52B H N N 191 B4P H4F H N N 192 B4P H3F H N N 193 B4P HO3B H N N 194 B4P H2F H N N 195 B4P HO2B H N N 196 B4P H1F H N N 197 B4P H8B H N N 198 B4P H61B H N N 199 B4P H62B H N N 200 B4P H2B H N N 201 EDO C1 C N N 202 EDO O1 O N N 203 EDO C2 C N N 204 EDO O2 O N N 205 EDO H11 H N N 206 EDO H12 H N N 207 EDO HO1 H N N 208 EDO H21 H N N 209 EDO H22 H N N 210 EDO HO2 H N N 211 GLU N N N N 212 GLU CA C N S 213 GLU C C N N 214 GLU O O N N 215 GLU CB C N N 216 GLU CG C N N 217 GLU CD C N N 218 GLU OE1 O N N 219 GLU OE2 O N N 220 GLU OXT O N N 221 GLU H H N N 222 GLU H2 H N N 223 GLU HA H N N 224 GLU HB2 H N N 225 GLU HB3 H N N 226 GLU HG2 H N N 227 GLU HG3 H N N 228 GLU HE2 H N N 229 GLU HXT H N N 230 GLY N N N N 231 GLY CA C N N 232 GLY C C N N 233 GLY O O N N 234 GLY OXT O N N 235 GLY H H N N 236 GLY H2 H N N 237 GLY HA2 H N N 238 GLY HA3 H N N 239 GLY HXT H N N 240 GOL C1 C N N 241 GOL O1 O N N 242 GOL C2 C N N 243 GOL O2 O N N 244 GOL C3 C N N 245 GOL O3 O N N 246 GOL H11 H N N 247 GOL H12 H N N 248 GOL HO1 H N N 249 GOL H2 H N N 250 GOL HO2 H N N 251 GOL H31 H N N 252 GOL H32 H N N 253 GOL HO3 H N N 254 HIS N N N N 255 HIS CA C N S 256 HIS C C N N 257 HIS O O N N 258 HIS CB C N N 259 HIS CG C Y N 260 HIS ND1 N Y N 261 HIS CD2 C Y N 262 HIS CE1 C Y N 263 HIS NE2 N Y N 264 HIS OXT O N N 265 HIS H H N N 266 HIS H2 H N N 267 HIS HA H N N 268 HIS HB2 H N N 269 HIS HB3 H N N 270 HIS HD1 H N N 271 HIS HD2 H N N 272 HIS HE1 H N N 273 HIS HE2 H N N 274 HIS HXT H N N 275 HOH O O N N 276 HOH H1 H N N 277 HOH H2 H N N 278 ILE N N N N 279 ILE CA C N S 280 ILE C C N N 281 ILE O O N N 282 ILE CB C N S 283 ILE CG1 C N N 284 ILE CG2 C N N 285 ILE CD1 C N N 286 ILE OXT O N N 287 ILE H H N N 288 ILE H2 H N N 289 ILE HA H N N 290 ILE HB H N N 291 ILE HG12 H N N 292 ILE HG13 H N N 293 ILE HG21 H N N 294 ILE HG22 H N N 295 ILE HG23 H N N 296 ILE HD11 H N N 297 ILE HD12 H N N 298 ILE HD13 H N N 299 ILE HXT H N N 300 LEU N N N N 301 LEU CA C N S 302 LEU C C N N 303 LEU O O N N 304 LEU CB C N N 305 LEU CG C N N 306 LEU CD1 C N N 307 LEU CD2 C N N 308 LEU OXT O N N 309 LEU H H N N 310 LEU H2 H N N 311 LEU HA H N N 312 LEU HB2 H N N 313 LEU HB3 H N N 314 LEU HG H N N 315 LEU HD11 H N N 316 LEU HD12 H N N 317 LEU HD13 H N N 318 LEU HD21 H N N 319 LEU HD22 H N N 320 LEU HD23 H N N 321 LEU HXT H N N 322 LYS N N N N 323 LYS CA C N S 324 LYS C C N N 325 LYS O O N N 326 LYS CB C N N 327 LYS CG C N N 328 LYS CD C N N 329 LYS CE C N N 330 LYS NZ N N N 331 LYS OXT O N N 332 LYS H H N N 333 LYS H2 H N N 334 LYS HA H N N 335 LYS HB2 H N N 336 LYS HB3 H N N 337 LYS HG2 H N N 338 LYS HG3 H N N 339 LYS HD2 H N N 340 LYS HD3 H N N 341 LYS HE2 H N N 342 LYS HE3 H N N 343 LYS HZ1 H N N 344 LYS HZ2 H N N 345 LYS HZ3 H N N 346 LYS HXT H N N 347 MET N N N N 348 MET CA C N S 349 MET C C N N 350 MET O O N N 351 MET CB C N N 352 MET CG C N N 353 MET SD S N N 354 MET CE C N N 355 MET OXT O N N 356 MET H H N N 357 MET H2 H N N 358 MET HA H N N 359 MET HB2 H N N 360 MET HB3 H N N 361 MET HG2 H N N 362 MET HG3 H N N 363 MET HE1 H N N 364 MET HE2 H N N 365 MET HE3 H N N 366 MET HXT H N N 367 PHE N N N N 368 PHE CA C N S 369 PHE C C N N 370 PHE O O N N 371 PHE CB C N N 372 PHE CG C Y N 373 PHE CD1 C Y N 374 PHE CD2 C Y N 375 PHE CE1 C Y N 376 PHE CE2 C Y N 377 PHE CZ C Y N 378 PHE OXT O N N 379 PHE H H N N 380 PHE H2 H N N 381 PHE HA H N N 382 PHE HB2 H N N 383 PHE HB3 H N N 384 PHE HD1 H N N 385 PHE HD2 H N N 386 PHE HE1 H N N 387 PHE HE2 H N N 388 PHE HZ H N N 389 PHE HXT H N N 390 PRO N N N N 391 PRO CA C N S 392 PRO C C N N 393 PRO O O N N 394 PRO CB C N N 395 PRO CG C N N 396 PRO CD C N N 397 PRO OXT O N N 398 PRO H H N N 399 PRO HA H N N 400 PRO HB2 H N N 401 PRO HB3 H N N 402 PRO HG2 H N N 403 PRO HG3 H N N 404 PRO HD2 H N N 405 PRO HD3 H N N 406 PRO HXT H N N 407 SER N N N N 408 SER CA C N S 409 SER C C N N 410 SER O O N N 411 SER CB C N N 412 SER OG O N N 413 SER OXT O N N 414 SER H H N N 415 SER H2 H N N 416 SER HA H N N 417 SER HB2 H N N 418 SER HB3 H N N 419 SER HG H N N 420 SER HXT H N N 421 THR N N N N 422 THR CA C N S 423 THR C C N N 424 THR O O N N 425 THR CB C N R 426 THR OG1 O N N 427 THR CG2 C N N 428 THR OXT O N N 429 THR H H N N 430 THR H2 H N N 431 THR HA H N N 432 THR HB H N N 433 THR HG1 H N N 434 THR HG21 H N N 435 THR HG22 H N N 436 THR HG23 H N N 437 THR HXT H N N 438 TRP N N N N 439 TRP CA C N S 440 TRP C C N N 441 TRP O O N N 442 TRP CB C N N 443 TRP CG C Y N 444 TRP CD1 C Y N 445 TRP CD2 C Y N 446 TRP NE1 N Y N 447 TRP CE2 C Y N 448 TRP CE3 C Y N 449 TRP CZ2 C Y N 450 TRP CZ3 C Y N 451 TRP CH2 C Y N 452 TRP OXT O N N 453 TRP H H N N 454 TRP H2 H N N 455 TRP HA H N N 456 TRP HB2 H N N 457 TRP HB3 H N N 458 TRP HD1 H N N 459 TRP HE1 H N N 460 TRP HE3 H N N 461 TRP HZ2 H N N 462 TRP HZ3 H N N 463 TRP HH2 H N N 464 TRP HXT H N N 465 TYR N N N N 466 TYR CA C N S 467 TYR C C N N 468 TYR O O N N 469 TYR CB C N N 470 TYR CG C Y N 471 TYR CD1 C Y N 472 TYR CD2 C Y N 473 TYR CE1 C Y N 474 TYR CE2 C Y N 475 TYR CZ C Y N 476 TYR OH O N N 477 TYR OXT O N N 478 TYR H H N N 479 TYR H2 H N N 480 TYR HA H N N 481 TYR HB2 H N N 482 TYR HB3 H N N 483 TYR HD1 H N N 484 TYR HD2 H N N 485 TYR HE1 H N N 486 TYR HE2 H N N 487 TYR HH H N N 488 TYR HXT H N N 489 VAL N N N N 490 VAL CA C N S 491 VAL C C N N 492 VAL O O N N 493 VAL CB C N N 494 VAL CG1 C N N 495 VAL CG2 C N N 496 VAL OXT O N N 497 VAL H H N N 498 VAL H2 H N N 499 VAL HA H N N 500 VAL HB H N N 501 VAL HG11 H N N 502 VAL HG12 H N N 503 VAL HG13 H N N 504 VAL HG21 H N N 505 VAL HG22 H N N 506 VAL HG23 H N N 507 VAL HXT H N N 508 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 ATP PG O1G doub N N 70 ATP PG O2G sing N N 71 ATP PG O3G sing N N 72 ATP PG O3B sing N N 73 ATP O2G HOG2 sing N N 74 ATP O3G HOG3 sing N N 75 ATP PB O1B doub N N 76 ATP PB O2B sing N N 77 ATP PB O3B sing N N 78 ATP PB O3A sing N N 79 ATP O2B HOB2 sing N N 80 ATP PA O1A doub N N 81 ATP PA O2A sing N N 82 ATP PA O3A sing N N 83 ATP PA "O5'" sing N N 84 ATP O2A HOA2 sing N N 85 ATP "O5'" "C5'" sing N N 86 ATP "C5'" "C4'" sing N N 87 ATP "C5'" "H5'1" sing N N 88 ATP "C5'" "H5'2" sing N N 89 ATP "C4'" "O4'" sing N N 90 ATP "C4'" "C3'" sing N N 91 ATP "C4'" "H4'" sing N N 92 ATP "O4'" "C1'" sing N N 93 ATP "C3'" "O3'" sing N N 94 ATP "C3'" "C2'" sing N N 95 ATP "C3'" "H3'" sing N N 96 ATP "O3'" "HO3'" sing N N 97 ATP "C2'" "O2'" sing N N 98 ATP "C2'" "C1'" sing N N 99 ATP "C2'" "H2'" sing N N 100 ATP "O2'" "HO2'" sing N N 101 ATP "C1'" N9 sing N N 102 ATP "C1'" "H1'" sing N N 103 ATP N9 C8 sing Y N 104 ATP N9 C4 sing Y N 105 ATP C8 N7 doub Y N 106 ATP C8 H8 sing N N 107 ATP N7 C5 sing Y N 108 ATP C5 C6 sing Y N 109 ATP C5 C4 doub Y N 110 ATP C6 N6 sing N N 111 ATP C6 N1 doub Y N 112 ATP N6 HN61 sing N N 113 ATP N6 HN62 sing N N 114 ATP N1 C2 sing Y N 115 ATP C2 N3 doub Y N 116 ATP C2 H2 sing N N 117 ATP N3 C4 sing Y N 118 B4P PA O1A doub N N 119 B4P PA O2A sing N N 120 B4P PA O3A sing N N 121 B4P PA O5E sing N N 122 B4P O2A HOA2 sing N N 123 B4P O3A PB sing N N 124 B4P PB O1B doub N N 125 B4P PB O2B sing N N 126 B4P PB O3B sing N N 127 B4P O2B HOB2 sing N N 128 B4P O3B PG sing N N 129 B4P PG O1G doub N N 130 B4P PG O2G sing N N 131 B4P PG O3G sing N N 132 B4P O2G HOG2 sing N N 133 B4P O3G PD sing N N 134 B4P PD O1D doub N N 135 B4P PD O2D sing N N 136 B4P PD O5F sing N N 137 B4P O2D HOD2 sing N N 138 B4P O5E C5E sing N N 139 B4P C5E C4E sing N N 140 B4P C5E H51A sing N N 141 B4P C5E H52A sing N N 142 B4P C4E O4E sing N N 143 B4P C4E C3E sing N N 144 B4P C4E H4E sing N N 145 B4P O4E C1E sing N N 146 B4P C3E O3E sing N N 147 B4P C3E C2E sing N N 148 B4P C3E H3E sing N N 149 B4P O3E HO3A sing N N 150 B4P C2E O2E sing N N 151 B4P C2E C1E sing N N 152 B4P C2E H2E sing N N 153 B4P O2E HO2A sing N N 154 B4P C1E N9A sing N N 155 B4P C1E H1E sing N N 156 B4P N9A C8A sing Y N 157 B4P N9A C4A sing Y N 158 B4P C8A N7A doub Y N 159 B4P C8A H8A sing N N 160 B4P N7A C5A sing Y N 161 B4P C5A C6A sing Y N 162 B4P C5A C4A doub Y N 163 B4P C6A N6A sing N N 164 B4P C6A N1A doub Y N 165 B4P N6A H61A sing N N 166 B4P N6A H62A sing N N 167 B4P N1A C2A sing Y N 168 B4P C2A N3A doub Y N 169 B4P C2A H2A sing N N 170 B4P N3A C4A sing Y N 171 B4P O5F C5F sing N N 172 B4P C5F C4F sing N N 173 B4P C5F H51B sing N N 174 B4P C5F H52B sing N N 175 B4P C4F O4F sing N N 176 B4P C4F C3F sing N N 177 B4P C4F H4F sing N N 178 B4P O4F C1F sing N N 179 B4P C3F O3F sing N N 180 B4P C3F C2F sing N N 181 B4P C3F H3F sing N N 182 B4P O3F HO3B sing N N 183 B4P C2F O2F sing N N 184 B4P C2F C1F sing N N 185 B4P C2F H2F sing N N 186 B4P O2F HO2B sing N N 187 B4P C1F N9B sing N N 188 B4P C1F H1F sing N N 189 B4P N9B C8B sing Y N 190 B4P N9B C4B sing Y N 191 B4P C8B N7B doub Y N 192 B4P C8B H8B sing N N 193 B4P N7B C5B sing Y N 194 B4P C5B C6B sing Y N 195 B4P C5B C4B doub Y N 196 B4P C6B N6B sing N N 197 B4P C6B N1B doub Y N 198 B4P N6B H61B sing N N 199 B4P N6B H62B sing N N 200 B4P N1B C2B sing Y N 201 B4P C2B N3B doub Y N 202 B4P C2B H2B sing N N 203 B4P N3B C4B sing Y N 204 EDO C1 O1 sing N N 205 EDO C1 C2 sing N N 206 EDO C1 H11 sing N N 207 EDO C1 H12 sing N N 208 EDO O1 HO1 sing N N 209 EDO C2 O2 sing N N 210 EDO C2 H21 sing N N 211 EDO C2 H22 sing N N 212 EDO O2 HO2 sing N N 213 GLU N CA sing N N 214 GLU N H sing N N 215 GLU N H2 sing N N 216 GLU CA C sing N N 217 GLU CA CB sing N N 218 GLU CA HA sing N N 219 GLU C O doub N N 220 GLU C OXT sing N N 221 GLU CB CG sing N N 222 GLU CB HB2 sing N N 223 GLU CB HB3 sing N N 224 GLU CG CD sing N N 225 GLU CG HG2 sing N N 226 GLU CG HG3 sing N N 227 GLU CD OE1 doub N N 228 GLU CD OE2 sing N N 229 GLU OE2 HE2 sing N N 230 GLU OXT HXT sing N N 231 GLY N CA sing N N 232 GLY N H sing N N 233 GLY N H2 sing N N 234 GLY CA C sing N N 235 GLY CA HA2 sing N N 236 GLY CA HA3 sing N N 237 GLY C O doub N N 238 GLY C OXT sing N N 239 GLY OXT HXT sing N N 240 GOL C1 O1 sing N N 241 GOL C1 C2 sing N N 242 GOL C1 H11 sing N N 243 GOL C1 H12 sing N N 244 GOL O1 HO1 sing N N 245 GOL C2 O2 sing N N 246 GOL C2 C3 sing N N 247 GOL C2 H2 sing N N 248 GOL O2 HO2 sing N N 249 GOL C3 O3 sing N N 250 GOL C3 H31 sing N N 251 GOL C3 H32 sing N N 252 GOL O3 HO3 sing N N 253 HIS N CA sing N N 254 HIS N H sing N N 255 HIS N H2 sing N N 256 HIS CA C sing N N 257 HIS CA CB sing N N 258 HIS CA HA sing N N 259 HIS C O doub N N 260 HIS C OXT sing N N 261 HIS CB CG sing N N 262 HIS CB HB2 sing N N 263 HIS CB HB3 sing N N 264 HIS CG ND1 sing Y N 265 HIS CG CD2 doub Y N 266 HIS ND1 CE1 doub Y N 267 HIS ND1 HD1 sing N N 268 HIS CD2 NE2 sing Y N 269 HIS CD2 HD2 sing N N 270 HIS CE1 NE2 sing Y N 271 HIS CE1 HE1 sing N N 272 HIS NE2 HE2 sing N N 273 HIS OXT HXT sing N N 274 HOH O H1 sing N N 275 HOH O H2 sing N N 276 ILE N CA sing N N 277 ILE N H sing N N 278 ILE N H2 sing N N 279 ILE CA C sing N N 280 ILE CA CB sing N N 281 ILE CA HA sing N N 282 ILE C O doub N N 283 ILE C OXT sing N N 284 ILE CB CG1 sing N N 285 ILE CB CG2 sing N N 286 ILE CB HB sing N N 287 ILE CG1 CD1 sing N N 288 ILE CG1 HG12 sing N N 289 ILE CG1 HG13 sing N N 290 ILE CG2 HG21 sing N N 291 ILE CG2 HG22 sing N N 292 ILE CG2 HG23 sing N N 293 ILE CD1 HD11 sing N N 294 ILE CD1 HD12 sing N N 295 ILE CD1 HD13 sing N N 296 ILE OXT HXT sing N N 297 LEU N CA sing N N 298 LEU N H sing N N 299 LEU N H2 sing N N 300 LEU CA C sing N N 301 LEU CA CB sing N N 302 LEU CA HA sing N N 303 LEU C O doub N N 304 LEU C OXT sing N N 305 LEU CB CG sing N N 306 LEU CB HB2 sing N N 307 LEU CB HB3 sing N N 308 LEU CG CD1 sing N N 309 LEU CG CD2 sing N N 310 LEU CG HG sing N N 311 LEU CD1 HD11 sing N N 312 LEU CD1 HD12 sing N N 313 LEU CD1 HD13 sing N N 314 LEU CD2 HD21 sing N N 315 LEU CD2 HD22 sing N N 316 LEU CD2 HD23 sing N N 317 LEU OXT HXT sing N N 318 LYS N CA sing N N 319 LYS N H sing N N 320 LYS N H2 sing N N 321 LYS CA C sing N N 322 LYS CA CB sing N N 323 LYS CA HA sing N N 324 LYS C O doub N N 325 LYS C OXT sing N N 326 LYS CB CG sing N N 327 LYS CB HB2 sing N N 328 LYS CB HB3 sing N N 329 LYS CG CD sing N N 330 LYS CG HG2 sing N N 331 LYS CG HG3 sing N N 332 LYS CD CE sing N N 333 LYS CD HD2 sing N N 334 LYS CD HD3 sing N N 335 LYS CE NZ sing N N 336 LYS CE HE2 sing N N 337 LYS CE HE3 sing N N 338 LYS NZ HZ1 sing N N 339 LYS NZ HZ2 sing N N 340 LYS NZ HZ3 sing N N 341 LYS OXT HXT sing N N 342 MET N CA sing N N 343 MET N H sing N N 344 MET N H2 sing N N 345 MET CA C sing N N 346 MET CA CB sing N N 347 MET CA HA sing N N 348 MET C O doub N N 349 MET C OXT sing N N 350 MET CB CG sing N N 351 MET CB HB2 sing N N 352 MET CB HB3 sing N N 353 MET CG SD sing N N 354 MET CG HG2 sing N N 355 MET CG HG3 sing N N 356 MET SD CE sing N N 357 MET CE HE1 sing N N 358 MET CE HE2 sing N N 359 MET CE HE3 sing N N 360 MET OXT HXT sing N N 361 PHE N CA sing N N 362 PHE N H sing N N 363 PHE N H2 sing N N 364 PHE CA C sing N N 365 PHE CA CB sing N N 366 PHE CA HA sing N N 367 PHE C O doub N N 368 PHE C OXT sing N N 369 PHE CB CG sing N N 370 PHE CB HB2 sing N N 371 PHE CB HB3 sing N N 372 PHE CG CD1 doub Y N 373 PHE CG CD2 sing Y N 374 PHE CD1 CE1 sing Y N 375 PHE CD1 HD1 sing N N 376 PHE CD2 CE2 doub Y N 377 PHE CD2 HD2 sing N N 378 PHE CE1 CZ doub Y N 379 PHE CE1 HE1 sing N N 380 PHE CE2 CZ sing Y N 381 PHE CE2 HE2 sing N N 382 PHE CZ HZ sing N N 383 PHE OXT HXT sing N N 384 PRO N CA sing N N 385 PRO N CD sing N N 386 PRO N H sing N N 387 PRO CA C sing N N 388 PRO CA CB sing N N 389 PRO CA HA sing N N 390 PRO C O doub N N 391 PRO C OXT sing N N 392 PRO CB CG sing N N 393 PRO CB HB2 sing N N 394 PRO CB HB3 sing N N 395 PRO CG CD sing N N 396 PRO CG HG2 sing N N 397 PRO CG HG3 sing N N 398 PRO CD HD2 sing N N 399 PRO CD HD3 sing N N 400 PRO OXT HXT sing N N 401 SER N CA sing N N 402 SER N H sing N N 403 SER N H2 sing N N 404 SER CA C sing N N 405 SER CA CB sing N N 406 SER CA HA sing N N 407 SER C O doub N N 408 SER C OXT sing N N 409 SER CB OG sing N N 410 SER CB HB2 sing N N 411 SER CB HB3 sing N N 412 SER OG HG sing N N 413 SER OXT HXT sing N N 414 THR N CA sing N N 415 THR N H sing N N 416 THR N H2 sing N N 417 THR CA C sing N N 418 THR CA CB sing N N 419 THR CA HA sing N N 420 THR C O doub N N 421 THR C OXT sing N N 422 THR CB OG1 sing N N 423 THR CB CG2 sing N N 424 THR CB HB sing N N 425 THR OG1 HG1 sing N N 426 THR CG2 HG21 sing N N 427 THR CG2 HG22 sing N N 428 THR CG2 HG23 sing N N 429 THR OXT HXT sing N N 430 TRP N CA sing N N 431 TRP N H sing N N 432 TRP N H2 sing N N 433 TRP CA C sing N N 434 TRP CA CB sing N N 435 TRP CA HA sing N N 436 TRP C O doub N N 437 TRP C OXT sing N N 438 TRP CB CG sing N N 439 TRP CB HB2 sing N N 440 TRP CB HB3 sing N N 441 TRP CG CD1 doub Y N 442 TRP CG CD2 sing Y N 443 TRP CD1 NE1 sing Y N 444 TRP CD1 HD1 sing N N 445 TRP CD2 CE2 doub Y N 446 TRP CD2 CE3 sing Y N 447 TRP NE1 CE2 sing Y N 448 TRP NE1 HE1 sing N N 449 TRP CE2 CZ2 sing Y N 450 TRP CE3 CZ3 doub Y N 451 TRP CE3 HE3 sing N N 452 TRP CZ2 CH2 doub Y N 453 TRP CZ2 HZ2 sing N N 454 TRP CZ3 CH2 sing Y N 455 TRP CZ3 HZ3 sing N N 456 TRP CH2 HH2 sing N N 457 TRP OXT HXT sing N N 458 TYR N CA sing N N 459 TYR N H sing N N 460 TYR N H2 sing N N 461 TYR CA C sing N N 462 TYR CA CB sing N N 463 TYR CA HA sing N N 464 TYR C O doub N N 465 TYR C OXT sing N N 466 TYR CB CG sing N N 467 TYR CB HB2 sing N N 468 TYR CB HB3 sing N N 469 TYR CG CD1 doub Y N 470 TYR CG CD2 sing Y N 471 TYR CD1 CE1 sing Y N 472 TYR CD1 HD1 sing N N 473 TYR CD2 CE2 doub Y N 474 TYR CD2 HD2 sing N N 475 TYR CE1 CZ doub Y N 476 TYR CE1 HE1 sing N N 477 TYR CE2 CZ sing Y N 478 TYR CE2 HE2 sing N N 479 TYR CZ OH sing N N 480 TYR OH HH sing N N 481 TYR OXT HXT sing N N 482 VAL N CA sing N N 483 VAL N H sing N N 484 VAL N H2 sing N N 485 VAL CA C sing N N 486 VAL CA CB sing N N 487 VAL CA HA sing N N 488 VAL C O doub N N 489 VAL C OXT sing N N 490 VAL CB CG1 sing N N 491 VAL CB CG2 sing N N 492 VAL CB HB sing N N 493 VAL CG1 HG11 sing N N 494 VAL CG1 HG12 sing N N 495 VAL CG1 HG13 sing N N 496 VAL CG2 HG21 sing N N 497 VAL CG2 HG22 sing N N 498 VAL CG2 HG23 sing N N 499 VAL OXT HXT sing N N 500 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-TRIPHOSPHATE" ATP 3 "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" B4P 4 1,2-ETHANEDIOL EDO 5 GLYCEROL GOL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3I7U _pdbx_initial_refinement_model.details 'PDB ENTRY 3I7U' #