HEADER OXIDOREDUCTASE 09-JUL-09 3I83 TITLE CRYSTAL STRUCTURE OF 2-DEHYDROPANTOATE 2-REDUCTASE FROM METHYLOCOCCUS TITLE 2 CAPSULATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDROPANTOATE 2-REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.169; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 414; SOURCE 4 GENE: MCA2523, PANE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, OXIDOREDUCTASE, NADP, PANTOTHENATE BIOSYNTHESIS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.GILMORE,K.T.BAIN,S.CHANG,P.SAMPATHKUMAR,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3I83 1 REMARK REVDAT 5 10-FEB-21 3I83 1 AUTHOR JRNL REMARK REVDAT 4 21-NOV-18 3I83 1 AUTHOR REVDAT 3 01-NOV-17 3I83 1 REMARK REVDAT 2 13-JUL-11 3I83 1 VERSN REVDAT 1 21-JUL-09 3I83 0 JRNL AUTH J.B.BONANNO,M.GILMORE,K.T.BAIN,S.CHANG,P.SAMPATHKUMAR, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF 2-DEHYDROPANTOATE 2-REDUCTASE FROM JRNL TITL 2 METHYLOCOCCUS CAPSULATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 48101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4520 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2967 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6150 ; 1.523 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7264 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 5.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;32.816 ;23.614 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 725 ;14.596 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5050 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2959 ; 0.934 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1223 ; 0.278 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4733 ; 1.611 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1561 ; 2.557 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1415 ; 3.994 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 78.0370 13.3530 -43.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 0.0740 REMARK 3 T33: 0.3505 T12: -0.1383 REMARK 3 T13: 0.0232 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 5.9506 L22: 4.4266 REMARK 3 L33: 6.3097 L12: 1.5579 REMARK 3 L13: -4.5016 L23: 0.4714 REMARK 3 S TENSOR REMARK 3 S11: 0.1797 S12: -0.1939 S13: 0.7506 REMARK 3 S21: -0.6843 S22: 0.1458 S23: -0.5161 REMARK 3 S31: -1.0194 S32: 0.2798 S33: -0.3255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, TLS APPLIED TO N-TERMINAL 177 RESIDUES OF CHAIN B REMARK 4 REMARK 4 3I83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48181 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.605 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : 0.47500 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE PH 4.7, 16% PEG REMARK 280 4K, 100MM AMMONIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.92550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.31300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.58950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.31300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.92550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.58950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 GLU A 311 REMARK 465 GLY A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 SER B 62 REMARK 465 ALA B 63 REMARK 465 ALA B 64 REMARK 465 GLU B 65 REMARK 465 LEU B 66 REMARK 465 GLU B 67 REMARK 465 THR B 68 REMARK 465 LYS B 69 REMARK 465 PRO B 70 REMARK 465 ILE B 77 REMARK 465 LYS B 78 REMARK 465 VAL B 79 REMARK 465 VAL B 80 REMARK 465 GLU B 81 REMARK 465 GLY B 82 REMARK 465 ALA B 83 REMARK 465 PRO B 95 REMARK 465 ASP B 96 REMARK 465 THR B 97 REMARK 465 ASP B 118 REMARK 465 ASN B 119 REMARK 465 ASN B 310 REMARK 465 GLU B 311 REMARK 465 GLY B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 SER A 62 OG REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 THR A 68 OG1 CG2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 71 CG OD1 OD2 REMARK 470 LEU B 89 CG CD1 CD2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 91 CG OD1 OD2 REMARK 470 VAL B 93 CG1 CG2 REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 152 O HOH B 364 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 59 CB VAL B 59 CG2 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 272 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 31 -69.96 -97.38 REMARK 500 GLU A 67 -60.66 -104.82 REMARK 500 TYR A 143 -138.95 52.23 REMARK 500 GLU A 267 33.27 -86.88 REMARK 500 ALA B 39 -92.72 -92.12 REMARK 500 LEU B 49 -74.24 -97.03 REMARK 500 ASP B 91 40.09 -141.37 REMARK 500 VAL B 93 112.66 -178.71 REMARK 500 ILE B 128 136.40 -170.70 REMARK 500 TYR B 143 -141.32 59.12 REMARK 500 ARG B 145 135.92 -38.70 REMARK 500 PRO B 251 125.41 -36.25 REMARK 500 ILE B 271 -75.57 -77.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11146P RELATED DB: TARGETDB DBREF 3I83 A 2 310 UNP Q604L6 Q604L6_METCA 2 310 DBREF 3I83 B 2 310 UNP Q604L6 Q604L6_METCA 2 310 SEQADV 3I83 MET A -1 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 SER A 0 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 LEU A 1 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 GLU A 311 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 GLY A 312 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS A 313 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS A 314 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS A 315 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS A 316 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS A 317 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS A 318 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 MET B -1 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 SER B 0 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 LEU B 1 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 GLU B 311 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 GLY B 312 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS B 313 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS B 314 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS B 315 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS B 316 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS B 317 UNP Q604L6 EXPRESSION TAG SEQADV 3I83 HIS B 318 UNP Q604L6 EXPRESSION TAG SEQRES 1 A 320 MET SER LEU ASN ILE LEU VAL ILE GLY THR GLY ALA ILE SEQRES 2 A 320 GLY SER PHE TYR GLY ALA LEU LEU ALA LYS THR GLY HIS SEQRES 3 A 320 CYS VAL SER VAL VAL SER ARG SER ASP TYR GLU THR VAL SEQRES 4 A 320 LYS ALA LYS GLY ILE ARG ILE ARG SER ALA THR LEU GLY SEQRES 5 A 320 ASP TYR THR PHE ARG PRO ALA ALA VAL VAL ARG SER ALA SEQRES 6 A 320 ALA GLU LEU GLU THR LYS PRO ASP CYS THR LEU LEU CYS SEQRES 7 A 320 ILE LYS VAL VAL GLU GLY ALA ASP ARG VAL GLY LEU LEU SEQRES 8 A 320 ARG ASP ALA VAL ALA PRO ASP THR GLY ILE VAL LEU ILE SEQRES 9 A 320 SER ASN GLY ILE ASP ILE GLU PRO GLU VAL ALA ALA ALA SEQRES 10 A 320 PHE PRO ASP ASN GLU VAL ILE SER GLY LEU ALA PHE ILE SEQRES 11 A 320 GLY VAL THR ARG THR ALA PRO GLY GLU ILE TRP HIS GLN SEQRES 12 A 320 ALA TYR GLY ARG LEU MET LEU GLY ASN TYR PRO GLY GLY SEQRES 13 A 320 VAL SER GLU ARG VAL LYS THR LEU ALA ALA ALA PHE GLU SEQRES 14 A 320 GLU ALA GLY ILE ASP GLY ILE ALA THR GLU ASN ILE THR SEQRES 15 A 320 THR ALA ARG TRP GLN LYS CYS VAL TRP ASN ALA ALA PHE SEQRES 16 A 320 ASN PRO LEU SER VAL LEU SER GLY GLY LEU ASP THR LEU SEQRES 17 A 320 ASP ILE LEU SER THR GLN GLU GLY PHE VAL ARG ALA ILE SEQRES 18 A 320 MET GLN GLU ILE ARG ALA VAL ALA ALA ALA ASN GLY HIS SEQRES 19 A 320 PRO LEU PRO GLU ASP ILE VAL GLU LYS ASN VAL ALA SER SEQRES 20 A 320 THR TYR LYS MET PRO PRO TYR LYS THR SER MET LEU VAL SEQRES 21 A 320 ASP PHE GLU ALA GLY GLN PRO MET GLU THR GLU VAL ILE SEQRES 22 A 320 LEU GLY ASN ALA VAL ARG ALA GLY ARG ARG THR ARG VAL SEQRES 23 A 320 ALA ILE PRO HIS LEU GLU SER VAL TYR ALA LEU MET LYS SEQRES 24 A 320 LEU LEU GLU LEU ARG THR SER LYS SER LEU TRP GLY ASN SEQRES 25 A 320 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 320 MET SER LEU ASN ILE LEU VAL ILE GLY THR GLY ALA ILE SEQRES 2 B 320 GLY SER PHE TYR GLY ALA LEU LEU ALA LYS THR GLY HIS SEQRES 3 B 320 CYS VAL SER VAL VAL SER ARG SER ASP TYR GLU THR VAL SEQRES 4 B 320 LYS ALA LYS GLY ILE ARG ILE ARG SER ALA THR LEU GLY SEQRES 5 B 320 ASP TYR THR PHE ARG PRO ALA ALA VAL VAL ARG SER ALA SEQRES 6 B 320 ALA GLU LEU GLU THR LYS PRO ASP CYS THR LEU LEU CYS SEQRES 7 B 320 ILE LYS VAL VAL GLU GLY ALA ASP ARG VAL GLY LEU LEU SEQRES 8 B 320 ARG ASP ALA VAL ALA PRO ASP THR GLY ILE VAL LEU ILE SEQRES 9 B 320 SER ASN GLY ILE ASP ILE GLU PRO GLU VAL ALA ALA ALA SEQRES 10 B 320 PHE PRO ASP ASN GLU VAL ILE SER GLY LEU ALA PHE ILE SEQRES 11 B 320 GLY VAL THR ARG THR ALA PRO GLY GLU ILE TRP HIS GLN SEQRES 12 B 320 ALA TYR GLY ARG LEU MET LEU GLY ASN TYR PRO GLY GLY SEQRES 13 B 320 VAL SER GLU ARG VAL LYS THR LEU ALA ALA ALA PHE GLU SEQRES 14 B 320 GLU ALA GLY ILE ASP GLY ILE ALA THR GLU ASN ILE THR SEQRES 15 B 320 THR ALA ARG TRP GLN LYS CYS VAL TRP ASN ALA ALA PHE SEQRES 16 B 320 ASN PRO LEU SER VAL LEU SER GLY GLY LEU ASP THR LEU SEQRES 17 B 320 ASP ILE LEU SER THR GLN GLU GLY PHE VAL ARG ALA ILE SEQRES 18 B 320 MET GLN GLU ILE ARG ALA VAL ALA ALA ALA ASN GLY HIS SEQRES 19 B 320 PRO LEU PRO GLU ASP ILE VAL GLU LYS ASN VAL ALA SER SEQRES 20 B 320 THR TYR LYS MET PRO PRO TYR LYS THR SER MET LEU VAL SEQRES 21 B 320 ASP PHE GLU ALA GLY GLN PRO MET GLU THR GLU VAL ILE SEQRES 22 B 320 LEU GLY ASN ALA VAL ARG ALA GLY ARG ARG THR ARG VAL SEQRES 23 B 320 ALA ILE PRO HIS LEU GLU SER VAL TYR ALA LEU MET LYS SEQRES 24 B 320 LEU LEU GLU LEU ARG THR SER LYS SER LEU TRP GLY ASN SEQRES 25 B 320 GLU GLY HIS HIS HIS HIS HIS HIS HET ACY A 319 4 HETNAM ACY ACETIC ACID FORMUL 3 ACY C2 H4 O2 FORMUL 4 HOH *259(H2 O) HELIX 1 1 GLY A 9 THR A 22 1 14 HELIX 2 2 ASP A 33 GLY A 41 1 9 HELIX 3 3 SER A 62 LEU A 66 5 5 HELIX 4 4 ASP A 84 ARG A 90 1 7 HELIX 5 5 GLU A 109 PHE A 116 1 8 HELIX 6 6 SER A 156 ALA A 169 1 14 HELIX 7 7 ASN A 178 SER A 200 1 23 HELIX 8 8 ASP A 204 GLN A 212 1 9 HELIX 9 9 GLN A 212 ASN A 230 1 19 HELIX 10 10 ASP A 237 MET A 249 1 13 HELIX 11 11 THR A 254 GLY A 263 1 10 HELIX 12 12 GLU A 267 LEU A 272 1 6 HELIX 13 13 LEU A 272 THR A 282 1 11 HELIX 14 14 ILE A 286 SER A 304 1 19 HELIX 15 15 GLY B 9 GLY B 23 1 15 HELIX 16 16 ASP B 33 LYS B 40 1 8 HELIX 17 17 ASP B 84 LEU B 89 1 6 HELIX 18 18 GLU B 109 PHE B 116 1 8 HELIX 19 19 SER B 156 ALA B 169 1 14 HELIX 20 20 ASN B 178 SER B 200 1 23 HELIX 21 21 ASP B 204 GLN B 212 1 9 HELIX 22 22 GLN B 212 ASN B 230 1 19 HELIX 23 23 ASP B 237 MET B 249 1 13 HELIX 24 24 THR B 254 GLY B 263 1 10 HELIX 25 25 GLU B 267 THR B 282 1 16 HELIX 26 26 ILE B 286 SER B 304 1 19 SHEET 1 A 9 TYR A 52 PHE A 54 0 SHEET 2 A 9 ILE A 42 SER A 46 -1 N ILE A 44 O TYR A 52 SHEET 3 A 9 GLU A 137 ASN A 150 1 O ILE A 138 N ARG A 45 SHEET 4 A 9 VAL A 121 ALA A 134 -1 N THR A 131 O TRP A 139 SHEET 5 A 9 GLY A 98 ILE A 102 1 N ILE A 99 O ILE A 122 SHEET 6 A 9 CYS A 72 LEU A 75 1 N THR A 73 O VAL A 100 SHEET 7 A 9 ASN A 2 ILE A 6 1 N LEU A 4 O LEU A 74 SHEET 8 A 9 CYS A 25 VAL A 29 1 O SER A 27 N ILE A 3 SHEET 9 A 9 VAL A 59 VAL A 60 1 O VAL A 60 N VAL A 28 SHEET 1 B 4 TYR A 52 PHE A 54 0 SHEET 2 B 4 ILE A 42 SER A 46 -1 N ILE A 44 O TYR A 52 SHEET 3 B 4 GLU A 137 ASN A 150 1 O ILE A 138 N ARG A 45 SHEET 4 B 4 GLY A 173 ALA A 175 1 O ILE A 174 N LEU A 148 SHEET 1 C 9 TYR B 52 PHE B 54 0 SHEET 2 C 9 ILE B 42 SER B 46 -1 N ILE B 42 O PHE B 54 SHEET 3 C 9 GLU B 137 ASN B 150 1 O ILE B 138 N ARG B 43 SHEET 4 C 9 VAL B 121 ALA B 134 -1 N SER B 123 O GLY B 149 SHEET 5 C 9 ILE B 99 ILE B 102 1 N ILE B 99 O ILE B 122 SHEET 6 C 9 CYS B 72 LEU B 75 1 N THR B 73 O VAL B 100 SHEET 7 C 9 ILE B 3 ILE B 6 1 N LEU B 4 O CYS B 72 SHEET 8 C 9 VAL B 26 VAL B 29 1 O SER B 27 N VAL B 5 SHEET 9 C 9 VAL B 59 VAL B 60 1 O VAL B 60 N VAL B 28 SHEET 1 D 4 TYR B 52 PHE B 54 0 SHEET 2 D 4 ILE B 42 SER B 46 -1 N ILE B 42 O PHE B 54 SHEET 3 D 4 GLU B 137 ASN B 150 1 O ILE B 138 N ARG B 43 SHEET 4 D 4 GLY B 173 ALA B 175 1 O ILE B 174 N LEU B 148 CISPEP 1 TYR A 151 PRO A 152 0 0.09 CISPEP 2 TYR B 151 PRO B 152 0 -6.30 SITE 1 AC1 5 TRP A 189 ASN A 194 TYR A 252 THR A 254 SITE 2 AC1 5 SER A 255 CRYST1 75.851 79.179 100.626 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009938 0.00000