HEADER OXIDOREDUCTASE 10-JUL-09 3I99 TITLE THE CRYSTAL STRUCTURE OF THE UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE TITLE 2 REDUCTASE FROM THE VIBRIO CHOLERAE O1 BIOVAR TOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.158; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: GI: 15640345, MURB, VCM66_0302; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE,MURB,CELL ENVELOPE, KEYWDS 2 OXIDOREDUCTASE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 3 OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.GU,S.PETERSON,W.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 13-JUL-11 3I99 1 VERSN REVDAT 1 20-OCT-09 3I99 0 JRNL AUTH R.ZHANG,M.GU,S.PETERSON,W.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE JRNL TITL 2 UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE FROM THE JRNL TITL 3 VIBRIO CHOLERAE O1 BIOVAR TOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.893 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2749 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3742 ; 2.041 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 7.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;37.472 ;25.285 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;17.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2074 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 1.038 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2696 ; 1.961 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1067 ; 3.313 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1046 ; 5.279 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 150 REMARK 3 RESIDUE RANGE : A 151 A 200 REMARK 3 RESIDUE RANGE : A 201 A 250 REMARK 3 RESIDUE RANGE : A 251 A 300 REMARK 3 RESIDUE RANGE : A 301 A 348 REMARK 3 RESIDUE RANGE : A 358 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5740 13.0450 22.4850 REMARK 3 T TENSOR REMARK 3 T11: 0.0375 T22: 0.0135 REMARK 3 T33: 0.3073 T12: 0.0148 REMARK 3 T13: -0.0012 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.1313 L22: 1.0828 REMARK 3 L33: 1.0121 L12: -0.0709 REMARK 3 L13: -0.3380 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0668 S13: 0.0689 REMARK 3 S21: -0.0330 S22: 0.0297 S23: 0.1108 REMARK 3 S31: -0.0996 S32: -0.0618 S33: -0.0176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3I99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB054124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794, 0.9796 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18139 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 99.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE, 1.6M NAH2PO4/ REMARK 280 0.4M K2HPO4, PH 4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.66750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.00125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.33375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 TYR A 6 REMARK 465 PRO A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 349 REMARK 465 LYS A 350 REMARK 465 GLN A 351 REMARK 465 TRP A 352 REMARK 465 MSE A 353 REMARK 465 SER A 354 REMARK 465 GLU A 355 REMARK 465 GLN A 356 REMARK 465 ALA A 357 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 9 CA THR A 9 CB 0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 179 -106.32 -121.67 REMARK 500 ILE A 202 42.26 -149.00 REMARK 500 GLN A 300 95.28 -165.48 REMARK 500 SER A 344 -39.57 -132.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 433 DISTANCE = 5.67 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01372 RELATED DB: TARGETDB DBREF 3I99 A 1 357 UNP C3LQS2 C3LQS2_VIBCM 1 357 SEQRES 1 A 357 MSE ALA SER LEU SER TYR PRO LYS THR THR MSE GLN ILE SEQRES 2 A 357 GLN LEU GLY ALA ASN LEU LYS PRO TYR HIS THR PHE GLY SEQRES 3 A 357 ILE GLU GLN LEU ALA ALA GLN LEU VAL VAL ALA GLU SER SEQRES 4 A 357 ILE ASP ASP LEU LYS ALA LEU TYR CYS SER ALA GLU TRP SEQRES 5 A 357 ALA SER LEU PRO LYS LEU ILE ILE GLY LYS GLY SER ASN SEQRES 6 A 357 MSE LEU PHE THR CYS HIS TYR THR GLY MSE ILE VAL VAL SEQRES 7 A 357 ASN ARG LEU ASN GLY ILE GLU HIS GLN GLN ASP ASP ASP SEQRES 8 A 357 TYR HIS ARG LEU HIS VAL ALA GLY GLY GLU ASP TRP PRO SEQRES 9 A 357 SER LEU VAL SER TRP CYS VAL GLU GLN GLY ILE GLY GLY SEQRES 10 A 357 LEU GLU ASN LEU ALA LEU ILE PRO GLY CYS ALA GLY SER SEQRES 11 A 357 ALA PRO ILE GLN ASN ILE GLY ALA TYR GLY VAL GLU PHE SEQRES 12 A 357 LYS ASP VAL CYS ASP TYR VAL GLU TYR LEU CYS LEU GLU SEQRES 13 A 357 THR GLY THR VAL LYS ARG LEU THR MSE GLU GLU CYS GLN SEQRES 14 A 357 PHE GLY TYR ARG ASP SER ILE PHE LYS HIS GLN LEU TYR SEQRES 15 A 357 GLN LYS ALA VAL VAL THR ALA VAL GLY LEU LYS PHE ALA SEQRES 16 A 357 LYS ALA TRP GLN PRO ILE ILE GLN TYR GLY PRO LEU LYS SEQRES 17 A 357 ASP LEU SER SER ASP CYS ALA ILE HIS ASP VAL TYR GLN SEQRES 18 A 357 ARG VAL CYS ALA THR ARG MSE GLU LYS LEU PRO ASP PRO SEQRES 19 A 357 ALA VAL MSE GLY ASN ALA GLY SER PHE PHE LYS ASN PRO SEQRES 20 A 357 VAL ILE SER GLN GLN ALA PHE ALA ARG LEU GLN ILE GLU SEQRES 21 A 357 HIS PRO ASP VAL VAL ALA TYR PRO ALA GLU GLN GLY VAL SEQRES 22 A 357 LYS VAL ALA ALA GLY TRP LEU ILE ASP GLN ALA GLY LEU SEQRES 23 A 357 LYS GLY HIS GLN ILE GLY GLY ALA LYS VAL HIS PRO LYS SEQRES 24 A 357 GLN ALA LEU VAL ILE VAL ASN THR GLY ASP ALA SER ALA SEQRES 25 A 357 GLN ASP VAL LEU MSE LEU ALA ALA ASP ILE GLN GLN ARG SEQRES 26 A 357 VAL PHE ASN CYS TYR GLY ILE GLU LEU GLU HIS GLU VAL SEQRES 27 A 357 ARG PHE ILE GLY GLU SER GLU GLU THR ASN LEU LYS GLN SEQRES 28 A 357 TRP MSE SER GLU GLN ALA MODRES 3I99 MSE A 11 MET SELENOMETHIONINE MODRES 3I99 MSE A 66 MET SELENOMETHIONINE MODRES 3I99 MSE A 75 MET SELENOMETHIONINE MODRES 3I99 MSE A 165 MET SELENOMETHIONINE MODRES 3I99 MSE A 228 MET SELENOMETHIONINE MODRES 3I99 MSE A 237 MET SELENOMETHIONINE MODRES 3I99 MSE A 317 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 66 8 HET MSE A 75 8 HET MSE A 165 8 HET MSE A 228 8 HET MSE A 237 8 HET MSE A 317 8 HET FAD A 358 53 HET PO4 A 359 5 HET PO4 A 360 5 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *114(H2 O) HELIX 1 1 LYS A 20 HIS A 23 5 4 HELIX 2 2 SER A 39 CYS A 48 1 10 HELIX 3 3 ASP A 102 GLN A 113 1 12 HELIX 4 4 LEU A 118 ALA A 122 5 5 HELIX 5 5 CYS A 127 ALA A 131 5 5 HELIX 6 6 GLU A 166 GLN A 169 5 4 HELIX 7 7 SER A 175 HIS A 179 5 5 HELIX 8 8 TYR A 204 LEU A 210 5 7 HELIX 9 9 ALA A 215 LEU A 231 1 17 HELIX 10 10 SER A 250 HIS A 261 1 12 HELIX 11 11 ALA A 276 ALA A 284 1 9 HELIX 12 12 SER A 311 GLY A 331 1 21 SHEET 1 A 4 GLN A 14 ASN A 18 0 SHEET 2 A 4 LEU A 30 ALA A 37 -1 O LEU A 34 N GLN A 14 SHEET 3 A 4 TYR A 72 ASN A 79 1 O TYR A 72 N ALA A 32 SHEET 4 A 4 LYS A 57 ILE A 60 1 N LEU A 58 O VAL A 77 SHEET 1 B 2 MSE A 66 PHE A 68 0 SHEET 2 B 2 ARG A 339 ILE A 341 1 O ILE A 341 N LEU A 67 SHEET 1 C 5 ILE A 84 GLN A 88 0 SHEET 2 C 5 TYR A 92 ALA A 98 -1 O ARG A 94 N GLN A 87 SHEET 3 C 5 ALA A 185 ALA A 195 -1 O VAL A 190 N VAL A 97 SHEET 4 C 5 CYS A 147 CYS A 154 -1 N ASP A 148 O GLY A 191 SHEET 5 C 5 VAL A 160 THR A 164 -1 O LYS A 161 N TYR A 152 SHEET 1 D 2 GLY A 137 ALA A 138 0 SHEET 2 D 2 VAL A 141 GLU A 142 -1 O VAL A 141 N ALA A 138 SHEET 1 E 4 ASN A 239 SER A 242 0 SHEET 2 E 4 VAL A 303 ASN A 306 -1 O ILE A 304 N GLY A 241 SHEET 3 E 4 ALA A 294 VAL A 296 -1 N LYS A 295 O VAL A 305 SHEET 4 E 4 GLN A 290 ILE A 291 -1 N ILE A 291 O ALA A 294 SHEET 1 F 3 VAL A 248 ILE A 249 0 SHEET 2 F 3 VAL A 273 VAL A 275 -1 O VAL A 273 N ILE A 249 SHEET 3 F 3 ALA A 266 TYR A 267 -1 N TYR A 267 O LYS A 274 LINK C THR A 10 N MSE A 11 1555 1555 1.34 LINK C MSE A 11 N GLN A 12 1555 1555 1.34 LINK C ASN A 65 N MSE A 66 1555 1555 1.32 LINK C MSE A 66 N LEU A 67 1555 1555 1.33 LINK C GLY A 74 N MSE A 75 1555 1555 1.32 LINK C MSE A 75 N ILE A 76 1555 1555 1.32 LINK C THR A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N GLU A 166 1555 1555 1.35 LINK C ARG A 227 N MSE A 228 1555 1555 1.32 LINK C MSE A 228 N GLU A 229 1555 1555 1.34 LINK C VAL A 236 N MSE A 237 1555 1555 1.32 LINK C MSE A 237 N GLY A 238 1555 1555 1.33 LINK C LEU A 316 N MSE A 317 1555 1555 1.32 LINK C MSE A 317 N LEU A 318 1555 1555 1.33 SITE 1 AC1 34 THR A 24 ILE A 59 ILE A 60 GLY A 61 SITE 2 AC1 34 LYS A 62 GLY A 63 SER A 64 ASN A 65 SITE 3 AC1 34 MSE A 66 ASN A 79 ILE A 124 PRO A 125 SITE 4 AC1 34 GLY A 126 CYS A 127 SER A 130 ILE A 133 SITE 5 AC1 34 ILE A 136 GLY A 137 ARG A 173 ALA A 185 SITE 6 AC1 34 VAL A 186 VAL A 187 ARG A 227 ASN A 239 SITE 7 AC1 34 ALA A 240 GLY A 241 ARG A 339 HOH A 366 SITE 8 AC1 34 HOH A 375 HOH A 396 HOH A 405 HOH A 407 SITE 9 AC1 34 HOH A 455 HOH A 457 SITE 1 AC2 9 TYR A 172 ARG A 173 SER A 242 PHE A 244 SITE 2 AC2 9 LYS A 245 ASN A 246 LEU A 302 GLU A 337 SITE 3 AC2 9 HOH A 401 SITE 1 AC3 4 THR A 10 GLU A 38 SER A 39 ASP A 42 CRYST1 84.334 84.334 53.335 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018749 0.00000