HEADER TRANSFERASE/DNA 15-JUL-09 3IAY TITLE TERNARY COMPLEX OF DNA POLYMERASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3'; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3'; COMPND 7 CHAIN: T; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE DELTA CATALYTIC SUBUNIT; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: UNP RESIDUES 67 TO 985; COMPND 13 SYNONYM: DNA POLYMERASE III; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: OLIGONUCLEOTIDE SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: OLIGONUCLEOTIDE SYNTHESIS; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_TAXID: 4932; SOURCE 10 GENE: POL3; SOURCE 11 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS DNA POLYMERASE, PROTEIN-DNA COMPLEX, DNA REPLICATION, DNA-BINDING, KEYWDS 2 DNA-DIRECTED DNA POLYMERASE, EXONUCLEASE, HYDROLASE, METAL-BINDING, KEYWDS 3 NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 4 TRANSFERASE, ZINC-FINGER, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.K.SWAN,A.K.AGGARWAL REVDAT 3 21-FEB-24 3IAY 1 REMARK LINK REVDAT 2 13-JUL-11 3IAY 1 VERSN REVDAT 1 22-SEP-09 3IAY 0 JRNL AUTH M.K.SWAN,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL JRNL TITL STRUCTURAL BASIS OF HIGH-FIDELITY DNA SYNTHESIS BY YEAST DNA JRNL TITL 2 POLYMERASE DELTA JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 979 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19718023 JRNL DOI 10.1038/NSMB.1663 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 69856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6986 REMARK 3 NUCLEIC ACID ATOMS : 569 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 558 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7852 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10786 ; 1.227 ; 2.059 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 894 ; 5.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 329 ;33.958 ;23.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1228 ;14.138 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.191 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1220 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5746 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4438 ; 0.554 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7197 ; 1.033 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3414 ; 1.708 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3583 ; 2.663 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2880 -5.9420 9.5240 REMARK 3 T TENSOR REMARK 3 T11: -0.0540 T22: 0.0217 REMARK 3 T33: -0.0679 T12: -0.0260 REMARK 3 T13: 0.0093 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.2328 L22: 1.3079 REMARK 3 L33: 0.7275 L12: 0.9729 REMARK 3 L13: -0.3981 L23: -0.5161 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.1234 S13: -0.0910 REMARK 3 S21: 0.0165 S22: -0.0223 S23: -0.1337 REMARK 3 S31: -0.0153 S32: 0.1406 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3000 -29.1690 12.0460 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: -0.0573 REMARK 3 T33: -0.0489 T12: 0.0400 REMARK 3 T13: -0.0098 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.4092 L22: 2.0532 REMARK 3 L33: 5.2032 L12: -0.3874 REMARK 3 L13: -1.0576 L23: 1.5422 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.0247 S13: -0.1200 REMARK 3 S21: 0.1410 S22: 0.1659 S23: -0.0905 REMARK 3 S31: 0.4192 S32: 0.2776 S33: -0.0953 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 577 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5930 9.1060 9.1610 REMARK 3 T TENSOR REMARK 3 T11: -0.0057 T22: -0.0167 REMARK 3 T33: -0.1013 T12: -0.0035 REMARK 3 T13: 0.0584 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6619 L22: 1.0905 REMARK 3 L33: 0.8888 L12: 0.2189 REMARK 3 L13: -0.1146 L23: -0.4258 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: 0.0965 S13: 0.1075 REMARK 3 S21: 0.1522 S22: 0.0193 S23: 0.1257 REMARK 3 S31: -0.2408 S32: -0.0131 S33: -0.0740 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 578 A 711 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2540 -6.5150 38.1590 REMARK 3 T TENSOR REMARK 3 T11: -0.0037 T22: -0.0053 REMARK 3 T33: -0.1242 T12: -0.0219 REMARK 3 T13: 0.0165 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.2836 L22: 1.3988 REMARK 3 L33: 1.3758 L12: -0.7221 REMARK 3 L13: -0.8198 L23: 0.7277 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.1865 S13: -0.0068 REMARK 3 S21: 0.0709 S22: 0.0918 S23: -0.1484 REMARK 3 S31: -0.0332 S32: 0.2293 S33: -0.0557 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 712 A 838 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1100 4.2570 47.8410 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: -0.0061 REMARK 3 T33: -0.1326 T12: -0.0429 REMARK 3 T13: 0.0179 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.8384 L22: 1.2955 REMARK 3 L33: 0.9435 L12: -0.3001 REMARK 3 L13: -0.0968 L23: 0.3398 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.1830 S13: 0.0510 REMARK 3 S21: 0.1500 S22: 0.0205 S23: -0.0415 REMARK 3 S31: -0.1037 S32: 0.1069 S33: 0.0056 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 839 A 985 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6290 18.4470 21.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: -0.0561 REMARK 3 T33: -0.0733 T12: -0.0044 REMARK 3 T13: 0.0442 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.4802 L22: 0.4423 REMARK 3 L33: 2.1634 L12: -0.4222 REMARK 3 L13: -0.0631 L23: 0.1616 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0774 S13: 0.0534 REMARK 3 S21: 0.0536 S22: 0.0200 S23: 0.0406 REMARK 3 S31: -0.1557 S32: -0.0368 S33: -0.0363 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 2 P 12 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6970 0.0820 27.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0049 REMARK 3 T33: -0.0480 T12: 0.0190 REMARK 3 T13: 0.0322 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.4303 L22: 1.3377 REMARK 3 L33: 2.9249 L12: 0.2355 REMARK 3 L13: 0.8487 L23: -0.7653 REMARK 3 S TENSOR REMARK 3 S11: -0.0779 S12: -0.1256 S13: -0.0212 REMARK 3 S21: 0.0247 S22: 0.2398 S23: 0.1537 REMARK 3 S31: 0.0470 S32: -0.1653 S33: -0.1618 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 1 T 16 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5350 -2.6930 24.8870 REMARK 3 T TENSOR REMARK 3 T11: -0.0047 T22: -0.0462 REMARK 3 T33: -0.0555 T12: -0.0469 REMARK 3 T13: 0.0108 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.9731 L22: 0.9211 REMARK 3 L33: 1.4884 L12: -0.3949 REMARK 3 L13: 0.4403 L23: -0.4465 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: -0.0829 S13: -0.1890 REMARK 3 S21: -0.0028 S22: 0.0822 S23: 0.1899 REMARK 3 S31: 0.1075 S32: -0.0921 S33: 0.0010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-07; 29-AUG-07; 13-OCT-07; REMARK 200 08-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; N REMARK 200 RADIATION SOURCE : NSLS; NSLS; APS; NULL REMARK 200 BEAMLINE : X29A; X12B; 17-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 210; ADSC QUANTUM 315; ADSC REMARK 200 QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; MAD; REMARK 200 SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 4000, NAAC PH 5.5, 200MM REMARK 280 CAAC., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.97400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 67 REMARK 465 GLY A 68 REMARK 465 THR A 69 REMARK 465 GLN A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 PHE A 75 REMARK 465 GLU A 76 REMARK 465 GLN A 77 REMARK 465 ASP A 78 REMARK 465 VAL A 79 REMARK 465 SER A 80 REMARK 465 GLN A 81 REMARK 465 MET A 82 REMARK 465 GLU A 83 REMARK 465 HIS A 84 REMARK 465 ASP A 85 REMARK 465 MET A 86 REMARK 465 ALA A 87 REMARK 465 ASP A 88 REMARK 465 GLN A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 HIS A 92 REMARK 465 ASP A 93 REMARK 465 LEU A 94 REMARK 465 LYS A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 VAL A 494 REMARK 465 HIS A 495 REMARK 465 TYR A 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 95 OG REMARK 470 SER A 96 OG REMARK 470 PHE A 97 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 SER A 168 OG REMARK 470 SER A 206 OG REMARK 470 ASN A 244 CG OD1 ND2 REMARK 470 ILE A 328 CG1 CG2 CD1 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 GLU A 438 CG CD OE1 OE2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 ASN A 480 CG OD1 ND2 REMARK 470 GLN A 490 CG CD OE1 NE2 REMARK 470 SER A 497 OG REMARK 470 SER A 507 OG REMARK 470 LYS A 530 CG CD CE NZ REMARK 470 GLN A 579 CG CD OE1 NE2 REMARK 470 GLN A 581 CG CD OE1 NE2 REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 LYS A 639 CG CD CE NZ REMARK 470 LYS A 685 CG CD CE NZ REMARK 470 LYS A 689 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 812 O HOH A 1212 1.83 REMARK 500 O HOH T 394 O HOH T 527 1.97 REMARK 500 O HOH A 1328 O HOH A 1329 2.00 REMARK 500 OD1 ASP A 864 O HOH A 1332 2.07 REMARK 500 NE2 GLN A 961 O HOH A 1211 2.09 REMARK 500 N LYS A 717 O HOH A 1284 2.09 REMARK 500 O ACT A 987 O HOH A 1388 2.12 REMARK 500 O HOH T 387 O HOH T 543 2.13 REMARK 500 O VAL A 916 O HOH A 1027 2.14 REMARK 500 NE2 GLN A 832 OG SER A 837 2.14 REMARK 500 O HOH A 1273 O HOH A 1380 2.15 REMARK 500 O HOH P 317 O HOH T 463 2.16 REMARK 500 O ASP A 308 CE1 HIS A 311 2.18 REMARK 500 O HOH T 382 O HOH A 1261 2.18 REMARK 500 CE LYS A 717 O HOH A 63 2.19 REMARK 500 O HOH P 367 O HOH P 368 2.19 REMARK 500 OE2 GLU A 802 O HOH A 1271 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 933 OXT ACT A 988 2555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT P 5 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT T 1 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT T 6 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG T 8 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG T 9 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DA T 12 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG T 13 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 96 16.36 148.49 REMARK 500 PHE A 97 141.20 -35.70 REMARK 500 ILE A 128 143.06 -33.42 REMARK 500 ASN A 244 133.33 175.25 REMARK 500 TYR A 336 -31.81 -131.95 REMARK 500 ALA A 349 122.42 -34.52 REMARK 500 ASN A 363 -170.64 74.36 REMARK 500 PHE A 406 -76.67 -118.62 REMARK 500 ASP A 601 30.05 -99.57 REMARK 500 ASP A 641 -35.69 79.51 REMARK 500 LEU A 718 55.92 -141.36 REMARK 500 THR A 763 -61.72 74.05 REMARK 500 ASP A 764 20.90 -144.50 REMARK 500 PHE A 806 100.37 -162.96 REMARK 500 GLN A 961 -57.46 -120.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA T 17 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH T 51 O REMARK 620 2 HOH T 461 O 79.7 REMARK 620 3 HOH T 462 O 53.0 132.6 REMARK 620 4 HOH T 463 O 54.9 74.6 79.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 608 OD1 REMARK 620 2 PHE A 609 O 89.9 REMARK 620 3 ASP A 764 OD1 99.2 88.7 REMARK 620 4 DCP A 986 O1A 105.1 164.3 84.3 REMARK 620 5 DCP A 986 O2B 166.4 85.6 93.6 80.8 REMARK 620 6 DCP A 986 O3G 85.8 98.8 171.0 87.2 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 764 OD2 REMARK 620 2 DCP A 986 O1A 87.7 REMARK 620 3 HOH A1071 O 129.0 138.9 REMARK 620 4 HOH A1270 O 80.8 148.8 66.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 608 OD1 REMARK 620 2 ASP A 608 OD2 50.1 REMARK 620 3 GLU A 802 OE2 96.3 59.8 REMARK 620 4 DCP A 986 O3G 74.2 124.2 133.7 REMARK 620 5 HOH A1271 O 126.6 76.5 49.6 159.0 REMARK 620 6 HOH A1272 O 79.9 88.5 138.2 85.8 99.8 REMARK 620 7 HOH A1378 O 141.9 144.1 121.3 82.7 80.6 68.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 4 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD1 REMARK 620 2 HOH A1289 O 145.8 REMARK 620 3 HOH A1290 O 73.0 92.7 REMARK 620 4 HOH A1291 O 75.4 111.7 148.2 REMARK 620 5 HOH A1314 O 69.8 76.2 71.3 94.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA T 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 986 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 987 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 988 DBREF 3IAY A 67 985 UNP P15436 DPOD_YEAST 67 985 DBREF 3IAY P 1 12 PDB 3IAY 3IAY 1 12 DBREF 3IAY T 1 16 PDB 3IAY 3IAY 1 16 SEQRES 1 P 12 DA DT DC DC DT DC DC DC DC DT DA DOC SEQRES 1 T 16 DT DA DA DG DG DT DA DG DG DG DG DA DG SEQRES 2 T 16 DG DA DT SEQRES 1 A 919 MET GLY THR GLN LEU GLU SER THR PHE GLU GLN ASP VAL SEQRES 2 A 919 SER GLN MET GLU HIS ASP MET ALA ASP GLN GLU GLU HIS SEQRES 3 A 919 ASP LEU SER SER PHE GLU ARG LYS LYS LEU PRO THR ASP SEQRES 4 A 919 PHE ASP PRO SER LEU TYR ASP ILE SER PHE GLN GLN ILE SEQRES 5 A 919 ASP ALA GLU GLN SER VAL LEU ASN GLY ILE LYS ASP GLU SEQRES 6 A 919 ASN THR SER THR VAL VAL ARG PHE PHE GLY VAL THR SER SEQRES 7 A 919 GLU GLY HIS SER VAL LEU CYS ASN VAL THR GLY PHE LYS SEQRES 8 A 919 ASN TYR LEU TYR VAL PRO ALA PRO ASN SER SER ASP ALA SEQRES 9 A 919 ASN ASP GLN GLU GLN ILE ASN LYS PHE VAL HIS TYR LEU SEQRES 10 A 919 ASN GLU THR PHE ASP HIS ALA ILE ASP SER ILE GLU VAL SEQRES 11 A 919 VAL SER LYS GLN SER ILE TRP GLY TYR SER GLY ASP THR SEQRES 12 A 919 LYS LEU PRO PHE TRP LYS ILE TYR VAL THR TYR PRO HIS SEQRES 13 A 919 MET VAL ASN LYS LEU ARG THR ALA PHE GLU ARG GLY HIS SEQRES 14 A 919 LEU SER PHE ASN SER TRP PHE SER ASN GLY THR THR THR SEQRES 15 A 919 TYR ASP ASN ILE ALA TYR THR LEU ARG LEU MET VAL ASP SEQRES 16 A 919 CYS GLY ILE VAL GLY MET SER TRP ILE THR LEU PRO LYS SEQRES 17 A 919 GLY LYS TYR SER MET ILE GLU PRO ASN ASN ARG VAL SER SEQRES 18 A 919 SER CYS GLN LEU GLU VAL SER ILE ASN TYR ARG ASN LEU SEQRES 19 A 919 ILE ALA HIS PRO ALA GLU GLY ASP TRP SER HIS THR ALA SEQRES 20 A 919 PRO LEU ARG ILE MET SER PHE ASP ILE GLU CYS ALA GLY SEQRES 21 A 919 ARG ILE GLY VAL PHE PRO GLU PRO GLU TYR ASP PRO VAL SEQRES 22 A 919 ILE GLN ILE ALA ASN VAL VAL SER ILE ALA GLY ALA LYS SEQRES 23 A 919 LYS PRO PHE ILE ARG ASN VAL PHE THR LEU ASN THR CYS SEQRES 24 A 919 SER PRO ILE THR GLY SER MET ILE PHE SER HIS ALA THR SEQRES 25 A 919 GLU GLU GLU MET LEU SER ASN TRP ARG ASN PHE ILE ILE SEQRES 26 A 919 LYS VAL ASP PRO ASP VAL ILE ILE GLY TYR ASN THR THR SEQRES 27 A 919 ASN PHE ASP ILE PRO TYR LEU LEU ASN ARG ALA LYS ALA SEQRES 28 A 919 LEU LYS VAL ASN ASP PHE PRO TYR PHE GLY ARG LEU LYS SEQRES 29 A 919 THR VAL LYS GLN GLU ILE LYS GLU SER VAL PHE SER SER SEQRES 30 A 919 LYS ALA TYR GLY THR ARG GLU THR LYS ASN VAL ASN ILE SEQRES 31 A 919 ASP GLY ARG LEU GLN LEU ASP LEU LEU GLN PHE ILE GLN SEQRES 32 A 919 ARG GLU TYR LYS LEU ARG SER TYR THR LEU ASN ALA VAL SEQRES 33 A 919 SER ALA HIS PHE LEU GLY GLU GLN LYS GLU ASP VAL HIS SEQRES 34 A 919 TYR SER ILE ILE SER ASP LEU GLN ASN GLY ASP SER GLU SEQRES 35 A 919 THR ARG ARG ARG LEU ALA VAL TYR CYS LEU LYS ASP ALA SEQRES 36 A 919 TYR LEU PRO LEU ARG LEU MET GLU LYS LEU MET ALA LEU SEQRES 37 A 919 VAL ASN TYR THR GLU MET ALA ARG VAL THR GLY VAL PRO SEQRES 38 A 919 PHE SER TYR LEU LEU ALA ARG GLY GLN GLN ILE LYS VAL SEQRES 39 A 919 VAL SER GLN LEU PHE ARG LYS CYS LEU GLU ILE ASP THR SEQRES 40 A 919 VAL ILE PRO ASN MET GLN SER GLN ALA SER ASP ASP GLN SEQRES 41 A 919 TYR GLU GLY ALA THR VAL ILE GLU PRO ILE ARG GLY TYR SEQRES 42 A 919 TYR ASP VAL PRO ILE ALA THR LEU ASP PHE ASN SER LEU SEQRES 43 A 919 TYR PRO SER ILE MET MET ALA HIS ASN LEU CYS TYR THR SEQRES 44 A 919 THR LEU CYS ASN LYS ALA THR VAL GLU ARG LEU ASN LEU SEQRES 45 A 919 LYS ILE ASP GLU ASP TYR VAL ILE THR PRO ASN GLY ASP SEQRES 46 A 919 TYR PHE VAL THR THR LYS ARG ARG ARG GLY ILE LEU PRO SEQRES 47 A 919 ILE ILE LEU ASP GLU LEU ILE SER ALA ARG LYS ARG ALA SEQRES 48 A 919 LYS LYS ASP LEU ARG ASP GLU LYS ASP PRO PHE LYS ARG SEQRES 49 A 919 ASP VAL LEU ASN GLY ARG GLN LEU ALA LEU LYS ILE SER SEQRES 50 A 919 ALA ASN SER VAL TYR GLY PHE THR GLY ALA THR VAL GLY SEQRES 51 A 919 LYS LEU PRO CYS LEU ALA ILE SER SER SER VAL THR ALA SEQRES 52 A 919 TYR GLY ARG THR MET ILE LEU LYS THR LYS THR ALA VAL SEQRES 53 A 919 GLN GLU LYS TYR CYS ILE LYS ASN GLY TYR LYS HIS ASP SEQRES 54 A 919 ALA VAL VAL VAL TYR GLY ASP THR ASP SER VAL MET VAL SEQRES 55 A 919 LYS PHE GLY THR THR ASP LEU LYS GLU ALA MET ASP LEU SEQRES 56 A 919 GLY THR GLU ALA ALA LYS TYR VAL SER THR LEU PHE LYS SEQRES 57 A 919 HIS PRO ILE ASN LEU GLU PHE GLU LYS ALA TYR PHE PRO SEQRES 58 A 919 TYR LEU LEU ILE ASN LYS LYS ARG TYR ALA GLY LEU PHE SEQRES 59 A 919 TRP THR ASN PRO ASP LYS PHE ASP LYS LEU ASP GLN LYS SEQRES 60 A 919 GLY LEU ALA SER VAL ARG ARG ASP SER CYS SER LEU VAL SEQRES 61 A 919 SER ILE VAL MET ASN LYS VAL LEU LYS LYS ILE LEU ILE SEQRES 62 A 919 GLU ARG ASN VAL ASP GLY ALA LEU ALA PHE VAL ARG GLU SEQRES 63 A 919 THR ILE ASN ASP ILE LEU HIS ASN ARG VAL ASP ILE SER SEQRES 64 A 919 LYS LEU ILE ILE SER LYS THR LEU ALA PRO ASN TYR THR SEQRES 65 A 919 ASN PRO GLN PRO HIS ALA VAL LEU ALA GLU ARG MET LYS SEQRES 66 A 919 ARG ARG GLU GLY VAL GLY PRO ASN VAL GLY ASP ARG VAL SEQRES 67 A 919 ASP TYR VAL ILE ILE GLY GLY ASN ASP LYS LEU TYR ASN SEQRES 68 A 919 ARG ALA GLU ASP PRO LEU PHE VAL LEU GLU ASN ASN ILE SEQRES 69 A 919 GLN VAL ASP SER ARG TYR TYR LEU THR ASN GLN LEU GLN SEQRES 70 A 919 ASN PRO ILE ILE SER ILE VAL ALA PRO ILE ILE GLY ASP SEQRES 71 A 919 LYS GLN ALA ASN GLY MET PHE VAL VAL MODRES 3IAY DOC P 12 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 12 18 HET CA T 17 1 HET DCP A 986 28 HET CA A 1 1 HET CA A 2 1 HET CA A 3 1 HET CA A 4 1 HET ACT A 987 4 HET ACT A 988 4 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM ACT ACETATE ION FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 4 CA 5(CA 2+) FORMUL 5 DCP C9 H16 N3 O13 P3 FORMUL 10 ACT 2(C2 H3 O2 1-) FORMUL 12 HOH *558(H2 O) HELIX 1 1 SER A 167 ASN A 171 5 5 HELIX 2 2 ASP A 172 GLU A 185 1 14 HELIX 3 3 HIS A 222 GLY A 234 1 13 HELIX 4 4 SER A 237 TRP A 241 5 5 HELIX 5 5 ALA A 253 GLY A 263 1 11 HELIX 6 6 GLU A 281 ARG A 285 5 5 HELIX 7 7 GLU A 306 SER A 310 5 5 HELIX 8 8 THR A 378 ASP A 394 1 17 HELIX 9 9 PHE A 406 LEU A 418 1 13 HELIX 10 10 LEU A 464 TYR A 472 1 9 HELIX 11 11 THR A 478 GLY A 488 1 11 HELIX 12 12 ILE A 498 ASN A 504 1 7 HELIX 13 13 ASP A 506 LEU A 531 1 26 HELIX 14 14 MET A 532 GLY A 545 1 14 HELIX 15 15 SER A 549 ARG A 554 1 6 HELIX 16 16 GLY A 555 ILE A 571 1 17 HELIX 17 17 SER A 611 HIS A 620 1 10 HELIX 18 18 CYS A 623 THR A 625 5 3 HELIX 19 19 ASN A 629 LEU A 636 1 8 HELIX 20 20 GLY A 661 ASP A 683 1 23 HELIX 21 21 ASP A 686 GLY A 712 1 27 HELIX 22 22 CYS A 720 TYR A 746 1 27 HELIX 23 23 CYS A 747 GLY A 751 5 5 HELIX 24 24 ASP A 774 THR A 791 1 18 HELIX 25 25 LEU A 835 ARG A 839 5 5 HELIX 26 26 CYS A 843 ILE A 859 1 17 HELIX 27 27 ASN A 862 HIS A 879 1 18 HELIX 28 28 ASP A 883 ILE A 888 5 6 HELIX 29 29 GLN A 901 GLY A 915 1 15 HELIX 30 30 LYS A 934 ASN A 937 5 4 HELIX 31 31 ASP A 941 ASN A 948 1 8 HELIX 32 32 ASP A 953 GLN A 961 1 9 HELIX 33 33 LEU A 962 GLY A 975 1 14 HELIX 34 34 GLY A 975 PHE A 983 1 9 SHEET 1 A 7 SER A 278 MET A 279 0 SHEET 2 A 7 LEU A 291 ASN A 296 -1 O SER A 294 N SER A 278 SHEET 3 A 7 SER A 148 THR A 154 1 N LEU A 150 O LEU A 291 SHEET 4 A 7 THR A 135 THR A 143 -1 N PHE A 139 O CYS A 151 SHEET 5 A 7 ILE A 113 VAL A 124 -1 N SER A 123 O VAL A 136 SHEET 6 A 7 TRP A 269 LEU A 272 -1 O LEU A 272 N ILE A 113 SHEET 7 A 7 ILE A 301 HIS A 303 -1 O ILE A 301 N THR A 271 SHEET 1 B 4 TYR A 159 PRO A 163 0 SHEET 2 B 4 LEU A 211 VAL A 218 -1 O TRP A 214 N VAL A 162 SHEET 3 B 4 ILE A 191 SER A 201 -1 N VAL A 197 O PHE A 213 SHEET 4 B 4 THR A 573 VAL A 574 1 O VAL A 574 N GLN A 200 SHEET 1 C 6 MET A 372 HIS A 376 0 SHEET 2 C 6 ILE A 356 LEU A 362 1 N VAL A 359 O PHE A 374 SHEET 3 C 6 VAL A 339 ILE A 348 -1 N ILE A 342 O PHE A 360 SHEET 4 C 6 ARG A 316 CYS A 324 -1 N ILE A 317 O SER A 347 SHEET 5 C 6 VAL A 397 GLY A 400 1 O ILE A 399 N MET A 318 SHEET 6 C 6 LEU A 460 ASP A 463 1 O LEU A 460 N ILE A 398 SHEET 1 D 2 SER A 439 SER A 443 0 SHEET 2 D 2 GLY A 447 THR A 451 -1 O ARG A 449 N PHE A 441 SHEET 1 E 5 GLY A 598 TYR A 600 0 SHEET 2 E 5 LEU A 799 ASN A 812 -1 O TYR A 808 N TYR A 600 SHEET 3 E 5 ILE A 604 PHE A 609 -1 N THR A 606 O GLU A 802 SHEET 4 E 5 SER A 765 LYS A 769 -1 O VAL A 768 N ALA A 605 SHEET 5 E 5 VAL A 757 TYR A 760 -1 N VAL A 757 O LYS A 769 SHEET 1 F 4 GLY A 598 TYR A 600 0 SHEET 2 F 4 LEU A 799 ASN A 812 -1 O TYR A 808 N TYR A 600 SHEET 3 F 4 ARG A 815 TRP A 821 -1 O TRP A 821 N ALA A 804 SHEET 4 F 4 LYS A 829 LYS A 833 -1 O LYS A 833 N TYR A 816 SHEET 1 G 3 LEU A 627 CYS A 628 0 SHEET 2 G 3 TYR A 652 VAL A 654 -1 O TYR A 652 N CYS A 628 SHEET 3 G 3 TYR A 644 ILE A 646 -1 N VAL A 645 O PHE A 653 SHEET 1 H 3 ILE A 889 THR A 892 0 SHEET 2 H 3 ARG A 923 ILE A 928 -1 O VAL A 924 N LYS A 891 SHEET 3 H 3 ALA A 939 GLU A 940 -1 O GLU A 940 N VAL A 927 LINK O3' DA P 11 P DOC P 12 1555 1555 1.58 LINK CA CA T 17 O HOH T 51 1555 1555 2.90 LINK CA CA T 17 O HOH T 461 1555 1555 2.53 LINK CA CA T 17 O HOH T 462 1555 1555 2.80 LINK CA CA T 17 O HOH T 463 1555 1555 2.53 LINK CA CA A 1 OD1 ASP A 608 1555 1555 2.37 LINK CA CA A 1 O PHE A 609 1555 1555 2.22 LINK CA CA A 1 OD1 ASP A 764 1555 1555 2.25 LINK CA CA A 1 O1A DCP A 986 1555 1555 2.35 LINK CA CA A 1 O2B DCP A 986 1555 1555 2.29 LINK CA CA A 1 O3G DCP A 986 1555 1555 2.32 LINK CA CA A 2 OD2 ASP A 764 1555 1555 2.53 LINK CA CA A 2 O1A DCP A 986 1555 1555 2.67 LINK CA CA A 2 O HOH A1071 1555 1555 2.92 LINK CA CA A 2 O HOH A1270 1555 1555 2.25 LINK CA CA A 3 OD1 ASP A 608 1555 1555 2.56 LINK CA CA A 3 OD2 ASP A 608 1555 1555 2.66 LINK CA CA A 3 OE2 GLU A 802 1555 1555 2.78 LINK CA CA A 3 O3G DCP A 986 1555 1555 2.73 LINK CA CA A 3 O HOH A1271 1555 1555 2.36 LINK CA CA A 3 O HOH A1272 1555 1555 2.08 LINK CA CA A 3 O HOH A1378 1555 1555 2.70 LINK CA CA A 4 OD1 ASP A 321 1555 1555 2.48 LINK CA CA A 4 O HOH A1289 1555 1555 2.74 LINK CA CA A 4 O HOH A1290 1555 1555 2.34 LINK CA CA A 4 O HOH A1291 1555 1555 2.48 LINK CA CA A 4 O HOH A1314 1555 1555 2.44 CISPEP 1 SER A 243 ASN A 244 0 6.13 CISPEP 2 ASN A 244 GLY A 245 0 -3.92 CISPEP 3 HIS A 795 PRO A 796 0 3.07 CISPEP 4 HIS A 795 PRO A 796 0 4.85 CISPEP 5 PHE A 806 PRO A 807 0 -1.27 CISPEP 6 VAL A 984 VAL A 985 0 -24.60 SITE 1 AC1 4 HOH T 51 HOH T 461 HOH T 462 HOH T 463 SITE 1 AC2 20 CA A 1 CA A 2 CA A 3 HOH A 11 SITE 2 AC2 20 ASP A 608 PHE A 609 ASN A 610 SER A 611 SITE 3 AC2 20 LEU A 612 TYR A 613 ARG A 674 LYS A 701 SITE 4 AC2 20 ASN A 705 ASP A 764 HOH A1133 HOH A1269 SITE 5 AC2 20 HOH A1357 DOC P 12 DG T 4 DG T 5 SITE 1 AC3 5 CA A 2 ASP A 608 PHE A 609 ASP A 764 SITE 2 AC3 5 DCP A 986 SITE 1 AC4 7 CA A 1 ASP A 608 ASP A 764 DCP A 986 SITE 2 AC4 7 HOH A1071 HOH A1270 DOC P 12 SITE 1 AC5 6 ASP A 608 GLU A 802 DCP A 986 HOH A1271 SITE 2 AC5 6 HOH A1272 HOH A1378 SITE 1 AC6 5 ASP A 321 HOH A1289 HOH A1290 HOH A1291 SITE 2 AC6 5 HOH A1314 SITE 1 AC7 3 GLN A 586 HOH A1232 HOH A1388 SITE 1 AC8 4 GLU A 185 HIS A 189 HOH A1406 HOH A1407 CRYST1 81.077 85.948 86.872 90.00 111.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012334 0.000000 0.004760 0.00000 SCALE2 0.000000 0.011635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012339 0.00000