HEADER TRANSFERASE 20-JUL-09 3ID6 TITLE CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS NOP5 (1-262) AND TITLE 2 FIBRILLARIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE MRNA SPLICING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NTD AND COILED-COIL DOMAIN (RESIDUES 1-262); COMPND 5 SYNONYM: NOP5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: FIBRILLARIN, FIB; COMPND 12 EC: 2.1.1.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: SSO0939; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/RIL+; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 12 ORGANISM_TAXID: 2287; SOURCE 13 GENE: FLPA, SSO0940, C33_014; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/RIL+; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS C/D GUIDE RNA, 2'-O-METHYLATION, COILED-COIL, METHYLTRANSFERASE, RNA- KEYWDS 2 BINDING, RRNA PROCESSING, TRANSFERASE, TRNA PROCESSING EXPDTA X-RAY DIFFRACTION AUTHOR K.YE REVDAT 5 01-NOV-23 3ID6 1 REMARK REVDAT 4 10-NOV-21 3ID6 1 REMARK SEQADV REVDAT 3 20-NOV-13 3ID6 1 JRNL REVDAT 2 13-JUL-11 3ID6 1 VERSN REVDAT 1 25-AUG-09 3ID6 0 JRNL AUTH K.YE,R.JIA,J.LIN,M.JU,J.PENG,A.XU,L.ZHANG JRNL TITL STRUCTURAL ORGANIZATION OF BOX C/D RNA-GUIDED RNA JRNL TITL 2 METHYLTRANSFERASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 13808 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19666563 JRNL DOI 10.1073/PNAS.0905128106 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1158 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.90000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -2.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.509 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3977 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5375 ; 1.307 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;38.921 ;24.416 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;21.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2977 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1645 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2673 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2455 ; 0.405 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3871 ; 0.703 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 1.064 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1504 ; 1.733 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8920 -47.8240 -28.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: -0.0265 REMARK 3 T33: 0.2159 T12: -0.0310 REMARK 3 T13: 0.0896 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 9.6966 L22: 16.0180 REMARK 3 L33: 9.6687 L12: -8.0488 REMARK 3 L13: 1.9961 L23: -3.0787 REMARK 3 S TENSOR REMARK 3 S11: -0.4158 S12: -0.8023 S13: -0.7592 REMARK 3 S21: 1.2077 S22: 0.3642 S23: -0.1216 REMARK 3 S31: 0.8410 S32: -0.0323 S33: 0.0517 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -26.1080 -43.6080 -23.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.0027 REMARK 3 T33: 0.1238 T12: -0.0294 REMARK 3 T13: 0.2392 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 7.2332 L22: 6.3703 REMARK 3 L33: 6.0488 L12: -4.4398 REMARK 3 L13: 1.5764 L23: -2.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.5521 S12: -0.8627 S13: -0.4286 REMARK 3 S21: 0.8846 S22: 0.6960 S23: 0.7497 REMARK 3 S31: 0.0074 S32: -0.6966 S33: -0.1439 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8880 -40.0460 -38.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0474 REMARK 3 T33: 0.2196 T12: -0.0914 REMARK 3 T13: 0.0703 T23: -0.0620 REMARK 3 L TENSOR REMARK 3 L11: 3.5053 L22: 7.1329 REMARK 3 L33: 6.0441 L12: -1.8551 REMARK 3 L13: 1.6344 L23: -1.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: 0.3563 S13: -0.2849 REMARK 3 S21: -0.1387 S22: -0.4780 S23: 0.0893 REMARK 3 S31: 0.3937 S32: 0.1334 S33: 0.2352 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): -31.7630 3.2480 -7.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.2023 T22: 0.0933 REMARK 3 T33: 0.1687 T12: 0.0251 REMARK 3 T13: 0.0158 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.7937 L22: 4.7179 REMARK 3 L33: 4.8388 L12: -0.0793 REMARK 3 L13: -0.1551 L23: 4.3124 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.1107 S13: 0.0625 REMARK 3 S21: -0.4497 S22: -0.2034 S23: 0.3218 REMARK 3 S31: -0.4189 S32: -0.2283 S33: 0.1601 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8280 15.4150 -1.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1138 REMARK 3 T33: 0.2255 T12: -0.0579 REMARK 3 T13: 0.0577 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.1479 L22: 4.7946 REMARK 3 L33: 4.1213 L12: -0.0095 REMARK 3 L13: -0.9495 L23: 1.1657 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: 0.0053 S13: 0.1496 REMARK 3 S21: -0.3410 S22: 0.0777 S23: -0.2157 REMARK 3 S31: -0.7062 S32: 0.3430 S33: -0.1944 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 72 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6770 -14.6670 -55.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: -0.0369 REMARK 3 T33: 0.0405 T12: -0.1254 REMARK 3 T13: -0.0495 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 4.6663 L22: 6.5287 REMARK 3 L33: 10.2147 L12: 1.4011 REMARK 3 L13: 1.0330 L23: -3.4198 REMARK 3 S TENSOR REMARK 3 S11: -0.2253 S12: 0.3736 S13: 0.5337 REMARK 3 S21: -0.5157 S22: -0.2407 S23: -0.3279 REMARK 3 S31: -1.5186 S32: 0.5585 S33: 0.4660 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 73 C 180 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3530 -25.1930 -37.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.0379 REMARK 3 T33: 0.1465 T12: -0.0803 REMARK 3 T13: -0.0677 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.4976 L22: 4.2531 REMARK 3 L33: 5.8870 L12: 0.4212 REMARK 3 L13: 0.3066 L23: -0.4069 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.2806 S13: -0.0260 REMARK 3 S21: 0.2176 S22: -0.2359 S23: -0.1214 REMARK 3 S31: -0.4526 S32: 0.0643 S33: 0.2439 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 181 C 218 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2600 -19.1170 -34.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.0331 T22: 0.4640 REMARK 3 T33: 0.2391 T12: -0.2952 REMARK 3 T13: -0.1509 T23: 0.1534 REMARK 3 L TENSOR REMARK 3 L11: 10.5968 L22: 6.2426 REMARK 3 L33: 4.6553 L12: 3.0143 REMARK 3 L13: 3.9017 L23: -1.9434 REMARK 3 S TENSOR REMARK 3 S11: -0.3318 S12: -0.3093 S13: 0.1001 REMARK 3 S21: -0.0339 S22: -0.0047 S23: -0.2829 REMARK 3 S31: -0.9347 S32: 0.7158 S33: 0.3365 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 219 C 223 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8510 -8.6030 -38.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.3164 T22: 0.3325 REMARK 3 T33: 0.5285 T12: -0.0658 REMARK 3 T13: -0.0088 T23: 0.1275 REMARK 3 L TENSOR REMARK 3 L11: 120.3728 L22: 107.7208 REMARK 3 L33: 235.3267 L12: 42.4403 REMARK 3 L13: 143.6240 L23: -26.3865 REMARK 3 S TENSOR REMARK 3 S11: 0.4037 S12: 1.5172 S13: 4.9742 REMARK 3 S21: 1.6500 S22: 0.0361 S23: 4.5725 REMARK 3 S31: -1.7130 S32: 7.8300 S33: -0.4398 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 224 C 231 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0980 -27.3230 -37.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.3592 T22: 0.3880 REMARK 3 T33: 0.3508 T12: -0.1891 REMARK 3 T13: 0.0635 T23: 0.0955 REMARK 3 L TENSOR REMARK 3 L11: 8.4869 L22: 8.6585 REMARK 3 L33: 4.2509 L12: 5.3939 REMARK 3 L13: 5.3069 L23: 1.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.5155 S12: -0.0121 S13: -0.3202 REMARK 3 S21: 1.8901 S22: 0.5125 S23: -0.5247 REMARK 3 S31: 0.3709 S32: 1.2912 S33: 0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ID6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2NNW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M KF, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.75850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.18200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.75850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.18200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.57000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.75850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.18200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.57000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.75850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.18200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 260 REMARK 465 VAL A 261 REMARK 465 ALA A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 VAL C 4 REMARK 465 ALA C 183 REMARK 465 ARG C 184 REMARK 465 SER C 185 REMARK 465 ILE C 186 REMARK 465 ASP C 187 REMARK 465 VAL C 188 REMARK 465 THR C 189 REMARK 465 GLY C 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE C 154 NE2 GLN C 159 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 98 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 98 C - N - CD ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 58 -66.22 -99.79 REMARK 500 ASN A 59 77.45 55.16 REMARK 500 PRO A 85 -71.61 -54.49 REMARK 500 THR C 10 -157.09 -88.62 REMARK 500 ASN C 14 15.42 54.86 REMARK 500 ASN C 35 -15.27 72.86 REMARK 500 ARG C 75 -168.47 -124.91 REMARK 500 ALA C 86 -145.15 53.58 REMARK 500 GLU C 99 -171.38 59.09 REMARK 500 VAL C 144 -154.59 -71.09 REMARK 500 GLU C 194 29.60 -163.91 REMARK 500 SER C 206 -8.50 -52.64 REMARK 500 ASN C 207 -12.86 -166.58 REMARK 500 ASP C 222 -22.11 -140.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR C 219 11.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ID5 RELATED DB: PDB DBREF 3ID6 A 1 262 UNP Q97ZH3 Q97ZH3_SULSO 1 262 DBREF 3ID6 C 1 232 UNP P58032 FLPA_SULSO 1 232 SEQADV 3ID6 VAL A 2 UNP Q97ZH3 MET 2 ENGINEERED MUTATION SEQADV 3ID6 HIS A 263 UNP Q97ZH3 EXPRESSION TAG SEQADV 3ID6 HIS A 264 UNP Q97ZH3 EXPRESSION TAG SEQADV 3ID6 HIS A 265 UNP Q97ZH3 EXPRESSION TAG SEQADV 3ID6 HIS A 266 UNP Q97ZH3 EXPRESSION TAG SEQADV 3ID6 HIS A 267 UNP Q97ZH3 EXPRESSION TAG SEQADV 3ID6 HIS A 268 UNP Q97ZH3 EXPRESSION TAG SEQADV 3ID6 ALA C 2 UNP P58032 SER 2 ENGINEERED MUTATION SEQRES 1 A 268 MET VAL LYS ILE TYR LEU ILE GLU HIS VAL ILE GLY ALA SEQRES 2 A 268 VAL ALA TYR ASP GLU ASN GLY ASN ILE VAL ASP TYR ILE SEQRES 3 A 268 THR ASN PRO ARG ASP LEU GLY LYS ILE THR GLU GLU LEU SEQRES 4 A 268 LEU ASN ASN GLU LYS GLY ILE PRO PHE SER ALA THR VAL SEQRES 5 A 268 GLU LEU LEU LYS LYS VAL ASN PRO GLN GLU VAL VAL VAL SEQRES 6 A 268 GLU ASN GLU ALA GLU VAL PRO LYS LEU GLN ALA LEU GLY SEQRES 7 A 268 TYR ARG VAL SER TYR GLU PRO TYR SER LYS VAL SER ARG SEQRES 8 A 268 ILE PHE ARG GLU SER LEU PRO LYS VAL ALA ILE ASP ILE SEQRES 9 A 268 LYS PHE ALA SER ASN GLU GLU ASP TYR TYR ASN PHE LEU SEQRES 10 A 268 HIS GLU LEU SER LEU GLU TYR THR ARG ARG LYS LEU ARG SEQRES 11 A 268 SER ALA ALA GLN LYS ARG ASP LEU LEU ALA ILE GLN ALA SEQRES 12 A 268 VAL ARG ALA MET ASP ASP ILE ASP LYS THR ILE ASN LEU SEQRES 13 A 268 PHE SER GLU ARG LEU ARG GLU TRP TYR SER ILE HIS PHE SEQRES 14 A 268 PRO GLU LEU ASP LYS LEU ILE GLU ASP HIS GLU GLU TYR SEQRES 15 A 268 ALA THR ILE VAL SER ARG PHE GLY ASP ARG GLY PHE LEU SEQRES 16 A 268 THR ILE ASP SER LEU LYS GLU LEU GLY PHE ASN GLU GLN SEQRES 17 A 268 ARG ILE ASN ARG ILE LEU ASP ALA ALA LYS LYS SER ILE SEQRES 18 A 268 GLY ALA ASP ILE SER GLU ASP ASP LEU SER ALA MET ARG SEQRES 19 A 268 MET ILE ALA ASN THR ILE LEU ASP LEU TYR ASN ILE ARG SEQRES 20 A 268 ARG ASN LEU ASN ASN TYR LEU GLU GLY VAL MET LYS GLU SEQRES 21 A 268 VAL ALA HIS HIS HIS HIS HIS HIS SEQRES 1 C 232 MET ALA GLU VAL ILE THR VAL LYS GLN THR ASN MET GLU SEQRES 2 C 232 ASN ILE TYR GLU CYS GLU PHE ASN ASP GLY SER PHE ARG SEQRES 3 C 232 LEU CYS THR ARG ASN LEU VAL PRO ASN PHE ASN VAL TYR SEQRES 4 C 232 GLY GLU ARG LEU ILE LYS TYR GLU GLY VAL GLU TYR ARG SEQRES 5 C 232 GLU TRP ASN ALA PHE ARG SER LYS LEU ALA GLY ALA ILE SEQRES 6 C 232 LEU LYS GLY LEU LYS THR ASN PRO ILE ARG LYS GLY THR SEQRES 7 C 232 LYS VAL LEU TYR LEU GLY ALA ALA SER GLY THR THR ILE SEQRES 8 C 232 SER HIS VAL SER ASP ILE ILE GLU LEU ASN GLY LYS ALA SEQRES 9 C 232 TYR GLY VAL GLU PHE SER PRO ARG VAL VAL ARG GLU LEU SEQRES 10 C 232 LEU LEU VAL ALA GLN ARG ARG PRO ASN ILE PHE PRO LEU SEQRES 11 C 232 LEU ALA ASP ALA ARG PHE PRO GLN SER TYR LYS SER VAL SEQRES 12 C 232 VAL GLU ASN VAL ASP VAL LEU TYR VAL ASP ILE ALA GLN SEQRES 13 C 232 PRO ASP GLN THR ASP ILE ALA ILE TYR ASN ALA LYS PHE SEQRES 14 C 232 PHE LEU LYS VAL ASN GLY ASP MET LEU LEU VAL ILE LYS SEQRES 15 C 232 ALA ARG SER ILE ASP VAL THR LYS ASP PRO LYS GLU ILE SEQRES 16 C 232 TYR LYS THR GLU VAL GLU LYS LEU GLU ASN SER ASN PHE SEQRES 17 C 232 GLU THR ILE GLN ILE ILE ASN LEU ASP PRO TYR ASP LYS SEQRES 18 C 232 ASP HIS ALA ILE VAL LEU SER LYS TYR LYS GLY HET SAM C 301 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM C15 H22 N6 O5 S HELIX 1 1 ASP A 31 GLY A 45 1 15 HELIX 2 2 PHE A 48 VAL A 58 1 11 HELIX 3 3 ALA A 69 GLN A 75 1 7 HELIX 4 4 SER A 87 SER A 96 1 10 HELIX 5 5 PRO A 98 ILE A 104 1 7 HELIX 6 6 ASN A 109 SER A 166 1 58 HELIX 7 7 ILE A 167 HIS A 168 5 2 HELIX 8 8 PHE A 169 PRO A 170 5 2 HELIX 9 9 GLU A 171 ILE A 176 1 6 HELIX 10 10 ASP A 178 GLY A 190 1 13 HELIX 11 11 THR A 196 LYS A 201 1 6 HELIX 12 12 GLU A 202 GLY A 204 5 3 HELIX 13 13 ASN A 206 LYS A 219 1 14 HELIX 14 14 SER A 226 LYS A 259 1 34 HELIX 15 15 SER C 59 LYS C 67 1 9 HELIX 16 16 GLY C 88 GLU C 99 1 12 HELIX 17 17 SER C 110 ARG C 124 1 15 HELIX 18 18 PHE C 136 TYR C 140 5 5 HELIX 19 19 ASP C 158 PHE C 170 1 13 HELIX 20 20 LYS C 197 SER C 206 1 10 SHEET 1 A 5 ILE A 22 THR A 27 0 SHEET 2 A 5 GLY A 12 TYR A 16 -1 N ALA A 13 O ILE A 26 SHEET 3 A 5 LYS A 3 HIS A 9 -1 N TYR A 5 O TYR A 16 SHEET 4 A 5 GLU A 62 VAL A 65 1 O GLU A 62 N ILE A 4 SHEET 5 A 5 ARG A 80 TYR A 83 1 O ARG A 80 N VAL A 63 SHEET 1 B 5 THR C 6 GLN C 9 0 SHEET 2 B 5 ILE C 15 GLU C 19 -1 O GLU C 19 N THR C 6 SHEET 3 B 5 PHE C 25 ARG C 30 -1 O CYS C 28 N TYR C 16 SHEET 4 B 5 VAL C 49 GLU C 53 -1 O ARG C 52 N THR C 29 SHEET 5 B 5 LEU C 43 TYR C 46 -1 N ILE C 44 O TYR C 51 SHEET 1 C 7 ILE C 127 LEU C 131 0 SHEET 2 C 7 LYS C 103 GLU C 108 1 N GLY C 106 O LEU C 130 SHEET 3 C 7 LYS C 79 LEU C 83 1 N TYR C 82 O TYR C 105 SHEET 4 C 7 VAL C 147 VAL C 152 1 O TYR C 151 N LEU C 83 SHEET 5 C 7 LEU C 171 ILE C 181 1 O LYS C 172 N VAL C 147 SHEET 6 C 7 ALA C 224 TYR C 230 -1 O VAL C 226 N LEU C 179 SHEET 7 C 7 PHE C 208 ASN C 215 -1 N GLN C 212 O LEU C 227 CISPEP 1 ASP C 217 PRO C 218 0 -2.16 SITE 1 AC1 13 TYR C 82 GLY C 84 ALA C 85 ALA C 86 SITE 2 AC1 13 THR C 90 GLU C 108 PHE C 109 SER C 110 SITE 3 AC1 13 ASP C 133 ALA C 134 ASP C 153 ILE C 154 SITE 4 AC1 13 GLN C 156 CRYST1 75.517 182.364 79.140 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012636 0.00000