HEADER TRANSFERASE 21-JUL-09 3IDP TITLE B-RAF V600E KINASE DOMAIN IN COMPLEX WITH AN AMINOISOQUINOLINE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: P94, V-RAF MURINE SARCOMA VIRAL ONCOGENE HOMOLOG B1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS ONCOGENE, ATP-BINDING, DFG-OUT, TRANSFERASE, CARDIOMYOPATHY, DISEASE KEYWDS 2 MUTATION, KINASE, METAL-BINDING, NUCLEOTIDE-BINDING, PHORBOL-ESTER KEYWDS 3 BINDING, PHOSPHOPROTEIN, PROTO-ONCOGENE, SERINE/THREONINE-PROTEIN KEYWDS 4 KINASE, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR D.A.WHITTINGTON,L.F.EPSTEIN REVDAT 5 06-SEP-23 3IDP 1 REMARK REVDAT 4 13-OCT-21 3IDP 1 REMARK SEQADV REVDAT 3 13-JUL-11 3IDP 1 VERSN REVDAT 2 27-OCT-09 3IDP 1 JRNL REVDAT 1 06-OCT-09 3IDP 0 JRNL AUTH A.L.SMITH,F.F.DEMORIN,N.A.PARAS,Q.HUANG,J.K.PETKUS, JRNL AUTH 2 E.M.DOHERTY,T.NIXEY,J.L.KIM,D.A.WHITTINGTON,L.F.EPSTEIN, JRNL AUTH 3 M.R.LEE,M.J.ROSE,C.BABIJ,M.FERNANDO,K.HESS,Q.LE,P.BELTRAN, JRNL AUTH 4 J.CARNAHAN JRNL TITL SELECTIVE INHIBITORS OF THE MUTANT B-RAF PATHWAY: DISCOVERY JRNL TITL 2 OF A POTENT AND ORALLY BIOAVAILABLE AMINOISOQUINOLINE. JRNL REF J.MED.CHEM. V. 52 6189 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19764794 JRNL DOI 10.1021/JM901081G REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 19724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4085 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 61.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4254 ; 0.008 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5746 ; 1.130 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 5.415 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;36.593 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 769 ;18.170 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.500 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.079 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3168 ; 0.003 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1798 ; 0.199 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2896 ; 0.309 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 152 ; 0.139 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.219 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.142 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2600 ; 0.798 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4105 ; 1.416 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1926 ; 1.179 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1641 ; 1.866 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 450 A 719 NULL REMARK 3 1 B 450 B 719 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1004 ; 0.270 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1007 ; 0.550 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1004 ; 0.400 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1007 ; 1.290 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0663 29.5194 27.2281 REMARK 3 T TENSOR REMARK 3 T11: -0.0202 T22: -0.0506 REMARK 3 T33: -0.0753 T12: -0.0094 REMARK 3 T13: -0.0028 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.7366 L22: 1.5053 REMARK 3 L33: 3.1463 L12: 0.0179 REMARK 3 L13: 0.0567 L23: 0.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0850 S13: -0.0398 REMARK 3 S21: -0.1362 S22: -0.0387 S23: 0.1926 REMARK 3 S31: -0.0138 S32: -0.0965 S33: 0.0444 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 720 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4395 16.9837 50.3449 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: -0.0394 REMARK 3 T33: -0.0898 T12: 0.0129 REMARK 3 T13: 0.0056 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.0606 L22: 1.5754 REMARK 3 L33: 0.7158 L12: 0.4578 REMARK 3 L13: -0.2868 L23: -0.2957 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: -0.0844 S13: -0.0212 REMARK 3 S21: 0.0683 S22: -0.0092 S23: 0.0209 REMARK 3 S31: -0.0577 S32: -0.0049 S33: -0.0277 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 449 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2272 46.4073 42.4853 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: 0.0052 REMARK 3 T33: -0.0403 T12: -0.0438 REMARK 3 T13: -0.0097 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.3334 L22: 2.0413 REMARK 3 L33: 3.1783 L12: 0.1864 REMARK 3 L13: 0.2356 L23: -0.4022 REMARK 3 S TENSOR REMARK 3 S11: -0.1358 S12: -0.1471 S13: 0.2505 REMARK 3 S21: 0.0924 S22: 0.0516 S23: -0.1036 REMARK 3 S31: -0.2220 S32: 0.1861 S33: 0.0841 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 534 B 720 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5570 40.7191 19.9376 REMARK 3 T TENSOR REMARK 3 T11: -0.0143 T22: -0.0407 REMARK 3 T33: -0.0383 T12: 0.0055 REMARK 3 T13: 0.0427 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.1358 L22: 0.9728 REMARK 3 L33: 1.0802 L12: 0.6434 REMARK 3 L13: -0.7518 L23: -0.6348 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.0718 S13: -0.1147 REMARK 3 S21: -0.0722 S22: 0.0595 S23: -0.0484 REMARK 3 S31: 0.0282 S32: 0.0400 S33: -0.0259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1UWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 8000, 75 MM SODIUM SUCCINATE, REMARK 280 0.1 M TRIS, PH 8.6, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.33950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.72850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.72850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.66975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.72850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.72850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.00925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.72850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.72850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.66975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.72850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.72850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.00925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.33950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 ASP B 434 REMARK 465 ARG B 435 REMARK 465 ASN B 436 REMARK 465 ARG B 437 REMARK 465 MET B 438 REMARK 465 LYS B 439 REMARK 465 THR B 440 REMARK 465 LEU B 441 REMARK 465 GLY B 442 REMARK 465 ARG B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ASP B 448 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 GLU B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 LEU B 721 REMARK 465 PRO B 722 REMARK 465 LYS B 723 REMARK 465 ILE B 724 REMARK 465 HIS B 725 REMARK 465 ARG B 726 REMARK 465 SER B 727 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 ASP A 434 REMARK 465 ARG A 435 REMARK 465 ASN A 436 REMARK 465 ARG A 437 REMARK 465 MET A 438 REMARK 465 LYS A 439 REMARK 465 THR A 440 REMARK 465 LEU A 441 REMARK 465 GLY A 442 REMARK 465 ARG A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 ASP A 448 REMARK 465 GLU A 600 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 ASP A 629 REMARK 465 LYS A 630 REMARK 465 LEU A 721 REMARK 465 PRO A 722 REMARK 465 LYS A 723 REMARK 465 ILE A 724 REMARK 465 HIS A 725 REMARK 465 ARG A 726 REMARK 465 SER A 727 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 465 -157.14 -139.86 REMARK 500 TRP B 476 105.12 -165.36 REMARK 500 ALA B 489 77.40 61.62 REMARK 500 ARG B 575 -13.70 77.59 REMARK 500 ASP B 576 40.10 -148.51 REMARK 500 LEU B 588 -75.04 -133.73 REMARK 500 ASN B 631 117.88 -35.49 REMARK 500 ASN A 486 -49.64 -24.35 REMARK 500 GLN A 530 151.14 -49.73 REMARK 500 ARG A 575 -12.91 76.63 REMARK 500 ASP A 576 42.39 -148.61 REMARK 500 LEU A 588 -73.37 -135.76 REMARK 500 ARG A 626 -76.70 -58.81 REMARK 500 ALA A 718 39.27 -79.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L1E B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L1E A 2 DBREF 3IDP B 434 727 UNP P15056 BRAF1_HUMAN 434 727 DBREF 3IDP A 434 727 UNP P15056 BRAF1_HUMAN 434 727 SEQADV 3IDP HIS B 428 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS B 429 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS B 430 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS B 431 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS B 432 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS B 433 UNP P15056 EXPRESSION TAG SEQADV 3IDP GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 3IDP HIS A 428 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS A 429 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS A 430 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS A 431 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS A 432 UNP P15056 EXPRESSION TAG SEQADV 3IDP HIS A 433 UNP P15056 EXPRESSION TAG SEQADV 3IDP GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQRES 1 B 300 HIS HIS HIS HIS HIS HIS ASP ARG ASN ARG MET LYS THR SEQRES 2 B 300 LEU GLY ARG ARG ASP SER SER ASP ASP TRP GLU ILE PRO SEQRES 3 B 300 ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SEQRES 4 B 300 SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP SEQRES 5 B 300 VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO SEQRES 6 B 300 GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU SEQRES 7 B 300 ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET GLY SEQRES 8 B 300 TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP SEQRES 9 B 300 CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ILE ILE SEQRES 10 B 300 GLU THR LYS PHE GLU MET ILE LYS LEU ILE ASP ILE ALA SEQRES 11 B 300 ARG GLN THR ALA GLN GLY MET ASP TYR LEU HIS ALA LYS SEQRES 12 B 300 SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE SEQRES 13 B 300 LEU HIS GLU ASP LEU THR VAL LYS ILE GLY ASP PHE GLY SEQRES 14 B 300 LEU ALA THR GLU LYS SER ARG TRP SER GLY SER HIS GLN SEQRES 15 B 300 PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO SEQRES 16 B 300 GLU VAL ILE ARG MET GLN ASP LYS ASN PRO TYR SER PHE SEQRES 17 B 300 GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU SEQRES 18 B 300 LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN SEQRES 19 B 300 ARG ASP GLN ILE ILE PHE MET VAL GLY ARG GLY TYR LEU SEQRES 20 B 300 SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS SEQRES 21 B 300 ALA MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS SEQRES 22 B 300 ARG ASP GLU ARG PRO LEU PHE PRO GLN ILE LEU ALA SER SEQRES 23 B 300 ILE GLU LEU LEU ALA ARG SER LEU PRO LYS ILE HIS ARG SEQRES 24 B 300 SER SEQRES 1 A 300 HIS HIS HIS HIS HIS HIS ASP ARG ASN ARG MET LYS THR SEQRES 2 A 300 LEU GLY ARG ARG ASP SER SER ASP ASP TRP GLU ILE PRO SEQRES 3 A 300 ASP GLY GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SEQRES 4 A 300 SER PHE GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP SEQRES 5 A 300 VAL ALA VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO SEQRES 6 A 300 GLN GLN LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU SEQRES 7 A 300 ARG LYS THR ARG HIS VAL ASN ILE LEU LEU PHE MET GLY SEQRES 8 A 300 TYR SER THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP SEQRES 9 A 300 CYS GLU GLY SER SER LEU TYR HIS HIS LEU HIS ILE ILE SEQRES 10 A 300 GLU THR LYS PHE GLU MET ILE LYS LEU ILE ASP ILE ALA SEQRES 11 A 300 ARG GLN THR ALA GLN GLY MET ASP TYR LEU HIS ALA LYS SEQRES 12 A 300 SER ILE ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE SEQRES 13 A 300 LEU HIS GLU ASP LEU THR VAL LYS ILE GLY ASP PHE GLY SEQRES 14 A 300 LEU ALA THR GLU LYS SER ARG TRP SER GLY SER HIS GLN SEQRES 15 A 300 PHE GLU GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO SEQRES 16 A 300 GLU VAL ILE ARG MET GLN ASP LYS ASN PRO TYR SER PHE SEQRES 17 A 300 GLN SER ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU SEQRES 18 A 300 LEU MET THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN SEQRES 19 A 300 ARG ASP GLN ILE ILE PHE MET VAL GLY ARG GLY TYR LEU SEQRES 20 A 300 SER PRO ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS SEQRES 21 A 300 ALA MET LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS SEQRES 22 A 300 ARG ASP GLU ARG PRO LEU PHE PRO GLN ILE LEU ALA SER SEQRES 23 A 300 ILE GLU LEU LEU ALA ARG SER LEU PRO LYS ILE HIS ARG SEQRES 24 A 300 SER HET L1E B 1 35 HET L1E A 2 35 HETNAM L1E N~1~-(4-CHLOROPHENYL)-6-METHYL-N~5~-[3-(7H-PURIN-6-YL) HETNAM 2 L1E PYRIDIN-2-YL]ISOQUINOLINE-1,5-DIAMINE HETSYN L1E N5-(3-(9H-PURIN-6-YL)PYRIDIN-2-YL)-N1-(4-CHLOROPHENYL)- HETSYN 2 L1E 6-METHYLISOQUINOLINE-1,5-DIAMINE FORMUL 3 L1E 2(C26 H19 CL N8) FORMUL 5 HOH *79(H2 O) HELIX 1 1 GLN B 493 ARG B 506 1 14 HELIX 2 2 LEU B 537 ILE B 543 1 7 HELIX 3 3 GLU B 549 LYS B 570 1 22 HELIX 4 4 SER B 616 MET B 620 5 5 HELIX 5 5 ALA B 621 ARG B 626 1 6 HELIX 6 6 SER B 634 GLY B 652 1 19 HELIX 7 7 ASN B 661 ARG B 671 1 11 HELIX 8 8 ASP B 677 VAL B 681 5 5 HELIX 9 9 PRO B 686 LEU B 697 1 12 HELIX 10 10 LYS B 700 ARG B 704 5 5 HELIX 11 11 LEU B 706 ALA B 718 1 13 HELIX 12 12 THR A 491 ARG A 506 1 16 HELIX 13 13 LEU A 537 ILE A 543 1 7 HELIX 14 14 GLU A 549 LYS A 570 1 22 HELIX 15 15 LYS A 578 ASN A 580 5 3 HELIX 16 16 SER A 616 MET A 620 5 5 HELIX 17 17 ALA A 621 MET A 627 1 7 HELIX 18 18 SER A 634 GLY A 652 1 19 HELIX 19 19 ASN A 661 ARG A 671 1 11 HELIX 20 20 ASP A 677 VAL A 681 5 5 HELIX 21 21 PRO A 686 LEU A 697 1 12 HELIX 22 22 LYS A 700 ARG A 704 5 5 HELIX 23 23 LEU A 706 ALA A 718 1 13 SHEET 1 A 5 THR B 458 GLY B 464 0 SHEET 2 A 5 THR B 470 LYS B 475 -1 O VAL B 471 N GLY B 464 SHEET 3 A 5 ASP B 479 MET B 484 -1 O MET B 484 N THR B 470 SHEET 4 A 5 ALA B 526 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 A 5 PHE B 516 SER B 520 -1 N GLY B 518 O VAL B 528 SHEET 1 B 3 GLY B 534 SER B 536 0 SHEET 2 B 3 ILE B 582 HIS B 585 -1 O LEU B 584 N SER B 535 SHEET 3 B 3 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 SHEET 1 C 5 THR A 458 GLY A 466 0 SHEET 2 C 5 GLY A 469 LYS A 475 -1 O VAL A 471 N GLY A 464 SHEET 3 C 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470 SHEET 4 C 5 ALA A 526 GLN A 530 -1 O THR A 529 N ALA A 481 SHEET 5 C 5 PHE A 516 SER A 520 -1 N GLY A 518 O VAL A 528 SHEET 1 D 3 GLY A 534 SER A 536 0 SHEET 2 D 3 ILE A 582 HIS A 585 -1 O LEU A 584 N SER A 535 SHEET 3 D 3 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 CISPEP 1 LYS B 522 PRO B 523 0 4.54 CISPEP 2 THR A 488 ALA A 489 0 -0.47 CISPEP 3 LYS A 522 PRO A 523 0 8.55 CISPEP 4 ARG A 626 MET A 627 0 1.41 SITE 1 AC1 14 HOH B 28 VAL B 471 ALA B 481 LYS B 483 SITE 2 AC1 14 GLU B 501 LEU B 505 LEU B 514 THR B 529 SITE 3 AC1 14 GLN B 530 TRP B 531 CYS B 532 GLY B 593 SITE 4 AC1 14 ASP B 594 PHE B 595 SITE 1 AC2 14 HOH A 27 VAL A 471 ALA A 481 LYS A 483 SITE 2 AC2 14 GLU A 501 LEU A 505 LEU A 514 THR A 529 SITE 3 AC2 14 GLN A 530 TRP A 531 CYS A 532 GLY A 593 SITE 4 AC2 14 ASP A 594 PHE A 595 CRYST1 93.457 93.457 166.679 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006000 0.00000