HEADER OXIDOREDUCTASE 23-JUL-09 3IES
TITLE FIREFLY LUCIFERASE INHIBITOR COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LUCIFERIN 4-MONOOXYGENASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: LUCIFERASE;
COMPND 5 EC: 1.13.12.7
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PHOTINUS PYRALIS;
SOURCE 3 ORGANISM_COMMON: NORTH AMERICAN FIREFLY;
SOURCE 4 ORGANISM_TAXID: 7054
KEYWDS OXIDOREDUCTASE, MONOOXYGENASE, PHOTOPROTEIN, LUMINESCENCE, ATP-
KEYWDS 2 BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, PEROXISOME
EXPDTA X-RAY DIFFRACTION
AUTHOR S.LOVELL,K.P.BATTAILE,D.S.AULD,N.THORNE,W.A.LEA,D.J.MALONEY,M.SHEN,
AUTHOR 2 G.RAJ,C.J.THOMAS,A.SIMEONOV,R.P.HANZLIK,J.INGLESE
REVDAT 5 06-SEP-23 3IES 1 REMARK SEQADV
REVDAT 4 01-NOV-17 3IES 1 REMARK
REVDAT 3 31-MAR-10 3IES 1 JRNL
REVDAT 2 23-MAR-10 3IES 1 JRNL
REVDAT 1 16-FEB-10 3IES 0
JRNL AUTH D.S.AULD,S.LOVELL,N.THORNE,W.A.LEA,D.J.MALONEY,M.SHEN,G.RAI,
JRNL AUTH 2 K.P.BATTAILE,C.J.THOMAS,A.SIMEONOV,R.P.HANZLIK,J.INGLESE
JRNL TITL MOLECULAR BASIS FOR THE HIGH-AFFINITY BINDING AND
JRNL TITL 2 STABILIZATION OF FIREFLY LUCIFERASE BY PTC124.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 4878 2010
JRNL REFN ISSN 0027-8424
JRNL PMID 20194791
JRNL DOI 10.1073/PNAS.0909141107
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0066
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9
REMARK 3 NUMBER OF REFLECTIONS : 44525
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.184
REMARK 3 R VALUE (WORKING SET) : 0.182
REMARK 3 FREE R VALUE : 0.218
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2243
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3061
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10
REMARK 3 BIN R VALUE (WORKING SET) : 0.2180
REMARK 3 BIN FREE R VALUE SET COUNT : 153
REMARK 3 BIN FREE R VALUE : 0.2620
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3364
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 43
REMARK 3 SOLVENT ATOMS : 234
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.46
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.65000
REMARK 3 B22 (A**2) : 0.65000
REMARK 3 B33 (A**2) : -1.31000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.136
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.074
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3518 ; 0.013 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): 3191 ; 0.000 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4787 ; 1.430 ; 1.977
REMARK 3 BOND ANGLES OTHERS (DEGREES): 7421 ; 0.701 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 5.679 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.905 ;24.211
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;15.129 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.620 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.088 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3902 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 721 ; 0.000 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2157 ; 0.800 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 876 ; 0.182 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3496 ; 1.436 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 1.988 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1287 ; 3.208 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE
REMARK 3 RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY.
REMARK 4
REMARK 4 3IES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-09.
REMARK 100 THE DEPOSITION ID IS D_1000054321.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-APR-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-BM
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44525
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 200 DATA REDUNDANCY : 5.000
REMARK 200 R MERGE (I) : 0.10700
REMARK 200 R SYM (I) : 0.10700
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6220
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3
REMARK 200 DATA REDUNDANCY IN SHELL : 4.60
REMARK 200 R MERGE FOR SHELL (I) : 0.49400
REMARK 200 R SYM FOR SHELL (I) : 0.49400
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.274
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 3IEP
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.89
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1500, 8% MPD, 0.1M TRIS-HCL,
REMARK 280 PH 8.5, VAPOR DIFFUSION, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y,X,Z+1/4
REMARK 290 4555 Y,-X,Z+3/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.55000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.27500
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.82500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 GLU A 2
REMARK 465 SER A 199
REMARK 465 GLY A 200
REMARK 465 SER A 201
REMARK 465 THR A 202
REMARK 465 GLY A 203
REMARK 465 LYS A 439
REMARK 465 SER A 440
REMARK 465 LEU A 441
REMARK 465 ILE A 442
REMARK 465 LYS A 443
REMARK 465 TYR A 444
REMARK 465 LYS A 445
REMARK 465 GLY A 446
REMARK 465 TYR A 447
REMARK 465 GLN A 448
REMARK 465 VAL A 449
REMARK 465 ALA A 450
REMARK 465 PRO A 451
REMARK 465 ALA A 452
REMARK 465 GLU A 453
REMARK 465 LEU A 454
REMARK 465 GLU A 455
REMARK 465 SER A 456
REMARK 465 ILE A 457
REMARK 465 LEU A 458
REMARK 465 LEU A 459
REMARK 465 GLN A 460
REMARK 465 HIS A 461
REMARK 465 PRO A 462
REMARK 465 ASN A 463
REMARK 465 ILE A 464
REMARK 465 PHE A 465
REMARK 465 ASP A 466
REMARK 465 ALA A 467
REMARK 465 GLY A 468
REMARK 465 VAL A 469
REMARK 465 ALA A 470
REMARK 465 GLY A 471
REMARK 465 LEU A 472
REMARK 465 PRO A 473
REMARK 465 ASP A 474
REMARK 465 ASP A 475
REMARK 465 ASP A 476
REMARK 465 ALA A 477
REMARK 465 GLY A 478
REMARK 465 GLU A 479
REMARK 465 LEU A 480
REMARK 465 PRO A 481
REMARK 465 ALA A 482
REMARK 465 ALA A 483
REMARK 465 VAL A 484
REMARK 465 VAL A 485
REMARK 465 VAL A 486
REMARK 465 LEU A 487
REMARK 465 GLU A 488
REMARK 465 HIS A 489
REMARK 465 GLY A 490
REMARK 465 LYS A 491
REMARK 465 THR A 492
REMARK 465 MET A 493
REMARK 465 THR A 494
REMARK 465 GLU A 495
REMARK 465 LYS A 496
REMARK 465 GLU A 497
REMARK 465 ILE A 498
REMARK 465 VAL A 499
REMARK 465 ASP A 500
REMARK 465 TYR A 501
REMARK 465 VAL A 502
REMARK 465 ALA A 503
REMARK 465 SER A 504
REMARK 465 GLN A 505
REMARK 465 VAL A 506
REMARK 465 THR A 507
REMARK 465 THR A 508
REMARK 465 ALA A 509
REMARK 465 LYS A 510
REMARK 465 LYS A 511
REMARK 465 LEU A 512
REMARK 465 ARG A 513
REMARK 465 GLY A 514
REMARK 465 GLY A 515
REMARK 465 VAL A 516
REMARK 465 VAL A 517
REMARK 465 PHE A 518
REMARK 465 VAL A 519
REMARK 465 ASP A 520
REMARK 465 GLU A 521
REMARK 465 VAL A 522
REMARK 465 PRO A 523
REMARK 465 LYS A 524
REMARK 465 GLY A 525
REMARK 465 LEU A 526
REMARK 465 THR A 527
REMARK 465 GLY A 528
REMARK 465 LYS A 529
REMARK 465 LEU A 530
REMARK 465 ASP A 531
REMARK 465 ALA A 532
REMARK 465 ARG A 533
REMARK 465 LYS A 534
REMARK 465 ILE A 535
REMARK 465 ARG A 536
REMARK 465 GLU A 537
REMARK 465 ILE A 538
REMARK 465 LEU A 539
REMARK 465 ILE A 540
REMARK 465 LYS A 541
REMARK 465 ALA A 542
REMARK 465 LYS A 543
REMARK 465 LYS A 544
REMARK 465 GLY A 545
REMARK 465 GLY A 546
REMARK 465 LYS A 547
REMARK 465 SER A 548
REMARK 465 LYS A 549
REMARK 465 LEU A 550
REMARK 465 VAL A 551
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 5 CD CE NZ
REMARK 470 LYS A 9 CD CE NZ
REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 190 CE NZ
REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 406 CD OE1 OE2
REMARK 470 LYS A 414 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OG1 THR A 378 CG LYS A 380 2.09
REMARK 500 O PRO A 205 O HOH A 715 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 48 -0.58 77.45
REMARK 500 ASP A 153 43.59 -105.33
REMARK 500 THR A 346 -69.72 74.25
REMARK 500 PHE A 368 -7.62 78.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M24 A 552
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3IEP RELATED DB: PDB
REMARK 900 FIREFLY LUCIFERASE SPO STRUCTURE (P41 FORM)
REMARK 900 RELATED ID: 3IER RELATED DB: PDB
REMARK 900 FIREFLY LUCIFERASE APO STRUCTURE (P41 FORM) WITH PEG 400 BOUND
DBREF 3IES A 1 550 UNP P08659 LUCI_PHOPY 1 550
SEQADV 3IES VAL A 551 UNP P08659 EXPRESSION TAG
SEQRES 1 A 551 MET GLU ASP ALA LYS ASN ILE LYS LYS GLY PRO ALA PRO
SEQRES 2 A 551 PHE TYR PRO LEU GLU ASP GLY THR ALA GLY GLU GLN LEU
SEQRES 3 A 551 HIS LYS ALA MET LYS ARG TYR ALA LEU VAL PRO GLY THR
SEQRES 4 A 551 ILE ALA PHE THR ASP ALA HIS ILE GLU VAL ASN ILE THR
SEQRES 5 A 551 TYR ALA GLU TYR PHE GLU MET SER VAL ARG LEU ALA GLU
SEQRES 6 A 551 ALA MET LYS ARG TYR GLY LEU ASN THR ASN HIS ARG ILE
SEQRES 7 A 551 VAL VAL CYS SER GLU ASN SER LEU GLN PHE PHE MET PRO
SEQRES 8 A 551 VAL LEU GLY ALA LEU PHE ILE GLY VAL ALA VAL ALA PRO
SEQRES 9 A 551 ALA ASN ASP ILE TYR ASN GLU ARG GLU LEU LEU ASN SER
SEQRES 10 A 551 MET ASN ILE SER GLN PRO THR VAL VAL PHE VAL SER LYS
SEQRES 11 A 551 LYS GLY LEU GLN LYS ILE LEU ASN VAL GLN LYS LYS LEU
SEQRES 12 A 551 PRO ILE ILE GLN LYS ILE ILE ILE MET ASP SER LYS THR
SEQRES 13 A 551 ASP TYR GLN GLY PHE GLN SER MET TYR THR PHE VAL THR
SEQRES 14 A 551 SER HIS LEU PRO PRO GLY PHE ASN GLU TYR ASP PHE VAL
SEQRES 15 A 551 PRO GLU SER PHE ASP ARG ASP LYS THR ILE ALA LEU ILE
SEQRES 16 A 551 MET ASN SER SER GLY SER THR GLY LEU PRO LYS GLY VAL
SEQRES 17 A 551 ALA LEU PRO HIS ARG THR ALA CYS VAL ARG PHE SER HIS
SEQRES 18 A 551 ALA ARG ASP PRO ILE PHE GLY ASN GLN ILE ILE PRO ASP
SEQRES 19 A 551 THR ALA ILE LEU SER VAL VAL PRO PHE HIS HIS GLY PHE
SEQRES 20 A 551 GLY MET PHE THR THR LEU GLY TYR LEU ILE CYS GLY PHE
SEQRES 21 A 551 ARG VAL VAL LEU MET TYR ARG PHE GLU GLU GLU LEU PHE
SEQRES 22 A 551 LEU ARG SER LEU GLN ASP TYR LYS ILE GLN SER ALA LEU
SEQRES 23 A 551 LEU VAL PRO THR LEU PHE SER PHE PHE ALA LYS SER THR
SEQRES 24 A 551 LEU ILE ASP LYS TYR ASP LEU SER ASN LEU HIS GLU ILE
SEQRES 25 A 551 ALA SER GLY GLY ALA PRO LEU SER LYS GLU VAL GLY GLU
SEQRES 26 A 551 ALA VAL ALA LYS ARG PHE HIS LEU PRO GLY ILE ARG GLN
SEQRES 27 A 551 GLY TYR GLY LEU THR GLU THR THR SER ALA ILE LEU ILE
SEQRES 28 A 551 THR PRO GLU GLY ASP ASP LYS PRO GLY ALA VAL GLY LYS
SEQRES 29 A 551 VAL VAL PRO PHE PHE GLU ALA LYS VAL VAL ASP LEU ASP
SEQRES 30 A 551 THR GLY LYS THR LEU GLY VAL ASN GLN ARG GLY GLU LEU
SEQRES 31 A 551 CYS VAL ARG GLY PRO MET ILE MET SER GLY TYR VAL ASN
SEQRES 32 A 551 ASN PRO GLU ALA THR ASN ALA LEU ILE ASP LYS ASP GLY
SEQRES 33 A 551 TRP LEU HIS SER GLY ASP ILE ALA TYR TRP ASP GLU ASP
SEQRES 34 A 551 GLU HIS PHE PHE ILE VAL ASP ARG LEU LYS SER LEU ILE
SEQRES 35 A 551 LYS TYR LYS GLY TYR GLN VAL ALA PRO ALA GLU LEU GLU
SEQRES 36 A 551 SER ILE LEU LEU GLN HIS PRO ASN ILE PHE ASP ALA GLY
SEQRES 37 A 551 VAL ALA GLY LEU PRO ASP ASP ASP ALA GLY GLU LEU PRO
SEQRES 38 A 551 ALA ALA VAL VAL VAL LEU GLU HIS GLY LYS THR MET THR
SEQRES 39 A 551 GLU LYS GLU ILE VAL ASP TYR VAL ALA SER GLN VAL THR
SEQRES 40 A 551 THR ALA LYS LYS LEU ARG GLY GLY VAL VAL PHE VAL ASP
SEQRES 41 A 551 GLU VAL PRO LYS GLY LEU THR GLY LYS LEU ASP ALA ARG
SEQRES 42 A 551 LYS ILE ARG GLU ILE LEU ILE LYS ALA LYS LYS GLY GLY
SEQRES 43 A 551 LYS SER LYS LEU VAL
HET M24 A 552 43
HETNAM M24 5'-O-[(R)-[({3-[5-(2-FLUOROPHENYL)-1,2,4-OXADIAZOL-3-
HETNAM 2 M24 YL]PHENYL}CARBONYL)OXY](HYDROXY)PHOSPHORYL]ADENOSINE
FORMUL 2 M24 C25 H21 F N7 O9 P
FORMUL 3 HOH *234(H2 O)
HELIX 1 1 ASP A 3 ILE A 7 5 5
HELIX 2 2 THR A 21 LEU A 35 1 15
HELIX 3 3 TYR A 53 GLY A 71 1 19
HELIX 4 4 PHE A 88 ILE A 98 1 11
HELIX 5 5 ASN A 110 GLN A 122 1 13
HELIX 6 6 GLY A 132 LYS A 141 1 10
HELIX 7 7 SER A 163 LEU A 172 1 10
HELIX 8 8 HIS A 212 ASP A 224 1 13
HELIX 9 9 HIS A 245 CYS A 258 1 14
HELIX 10 10 GLU A 269 TYR A 280 1 12
HELIX 11 11 VAL A 288 SER A 298 1 11
HELIX 12 12 LEU A 300 TYR A 304 5 5
HELIX 13 13 SER A 320 PHE A 331 1 12
HELIX 14 14 THR A 343 THR A 346 5 4
HELIX 15 15 ASN A 404 ILE A 412 1 9
SHEET 1 A 5 LYS A 8 LYS A 9 0
SHEET 2 A 5 GLU A 370 VAL A 374 -1 O ALA A 371 N LYS A 8
SHEET 3 A 5 GLY A 388 ARG A 393 -1 O CYS A 391 N LYS A 372
SHEET 4 A 5 LEU A 418 TRP A 426 -1 O LEU A 418 N VAL A 392
SHEET 5 A 5 PHE A 432 ARG A 437 -1 O VAL A 435 N ILE A 423
SHEET 1 B 9 ASN A 50 THR A 52 0
SHEET 2 B 9 ILE A 40 ASP A 44 -1 N PHE A 42 O ILE A 51
SHEET 3 B 9 ARG A 261 LEU A 264 1 O LEU A 264 N THR A 43
SHEET 4 B 9 ALA A 236 SER A 239 1 N ILE A 237 O VAL A 263
SHEET 5 B 9 SER A 284 LEU A 287 1 O LEU A 286 N LEU A 238
SHEET 6 B 9 GLU A 311 GLY A 315 1 O ALA A 313 N ALA A 285
SHEET 7 B 9 ARG A 337 GLY A 341 1 O ARG A 337 N ILE A 312
SHEET 8 B 9 ALA A 348 ILE A 351 -1 O LEU A 350 N TYR A 340
SHEET 9 B 9 LYS A 364 VAL A 365 -1 O LYS A 364 N ILE A 351
SHEET 1 C 4 ALA A 101 PRO A 104 0
SHEET 2 C 4 ARG A 77 CYS A 81 1 N ILE A 78 O ALA A 103
SHEET 3 C 4 VAL A 125 VAL A 128 1 O PHE A 127 N VAL A 79
SHEET 4 C 4 LYS A 148 ILE A 151 1 O ILE A 150 N VAL A 126
SHEET 1 D 3 ILE A 192 ASN A 197 0
SHEET 2 D 3 GLY A 207 PRO A 211 -1 O VAL A 208 N MET A 196
SHEET 3 D 3 GLY A 400 TYR A 401 -1 O GLY A 400 N ALA A 209
SITE 1 AC1 21 HIS A 245 PHE A 247 GLY A 315 GLY A 316
SITE 2 AC1 21 ALA A 317 PRO A 318 GLN A 338 GLY A 339
SITE 3 AC1 21 TYR A 340 GLY A 341 LEU A 342 THR A 343
SITE 4 AC1 21 THR A 346 SER A 347 ALA A 348 VAL A 362
SITE 5 AC1 21 ASP A 422 ARG A 437 HOH A 627 HOH A 633
SITE 6 AC1 21 HOH A 778
CRYST1 83.654 83.654 97.100 90.00 90.00 90.00 P 41 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011954 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011954 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010299 0.00000