data_3IGM # _entry.id 3IGM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IGM NDB NA0109 RCSB RCSB054385 WWPDB D_1000054385 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IGM _pdbx_database_status.recvd_initial_deposition_date 2009-07-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lindner, S.E.' 1 'De Silva, E.' 2 'Keck, J.L.' 3 'Llinas, M.' 4 # _citation.id primary _citation.title 'Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 395 _citation.page_first 558 _citation.page_last 567 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19913037 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2009.11.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lindner, S.E.' 1 primary 'De Silva, E.K.' 2 primary 'Keck, J.L.' 3 primary 'Llinas, M.' 4 # _cell.entry_id 3IGM _cell.length_a 43.810 _cell.length_b 58.821 _cell.length_c 177.296 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IGM _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PF14_0633 protein' 8815.056 2 ? ? 'UNP residues 63-123, AP2 domain' ? 2 polymer syn "5'-D(*TP*GP*CP*AP*TP*GP*CP*A)-3'" 2426.617 4 ? ? ? 'cognate DNA' 3 water nat water 18.015 97 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSHMSSGYPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFNMDKEKARLAAVEFMKTVENNGRKKLEPGGSQFIVTD GSHMSSGYPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFNMDKEKARLAAVEFMKTVENNGRKKLEPGGSQFIVTD B,A ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DA)(DT)(DG)(DC)(DA)' TGCATGCA W,X,C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 PRO n 1 10 GLY n 1 11 VAL n 1 12 SER n 1 13 TRP n 1 14 ASN n 1 15 LYS n 1 16 ARG n 1 17 MET n 1 18 CYS n 1 19 ALA n 1 20 TRP n 1 21 LEU n 1 22 ALA n 1 23 PHE n 1 24 PHE n 1 25 TYR n 1 26 ASP n 1 27 GLY n 1 28 ALA n 1 29 SER n 1 30 ARG n 1 31 ARG n 1 32 SER n 1 33 ARG n 1 34 THR n 1 35 PHE n 1 36 HIS n 1 37 PRO n 1 38 LYS n 1 39 HIS n 1 40 PHE n 1 41 ASN n 1 42 MET n 1 43 ASP n 1 44 LYS n 1 45 GLU n 1 46 LYS n 1 47 ALA n 1 48 ARG n 1 49 LEU n 1 50 ALA n 1 51 ALA n 1 52 VAL n 1 53 GLU n 1 54 PHE n 1 55 MET n 1 56 LYS n 1 57 THR n 1 58 VAL n 1 59 GLU n 1 60 ASN n 1 61 ASN n 1 62 GLY n 1 63 ARG n 1 64 LYS n 1 65 LYS n 1 66 LEU n 1 67 GLU n 1 68 PRO n 1 69 GLY n 1 70 GLY n 1 71 SER n 1 72 GLN n 1 73 PHE n 1 74 ILE n 1 75 VAL n 1 76 THR n 1 77 ASP n 2 1 DT n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DC n 2 8 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'FP14_0633, PF14_0633' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 3D7 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'GST-tagged derivative of the AP2 domain of PF14_0633. GST removed by thrombin cleavage.' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 36329 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon plus' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pSURE, a pGEX4T-1 derivative' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in P. falciparum. DNA produced for this study was chemically synthesized.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q8IKH2_PLAF7 Q8IKH2 1 SSGYPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFNMDKEKARLAAVEFMKTVENNGRKK 63 ? 2 PDB 3IGM 3IGM 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IGM B 5 ? 65 ? Q8IKH2 63 ? 123 ? 63 123 2 1 3IGM A 5 ? 65 ? Q8IKH2 63 ? 123 ? 63 123 3 2 3IGM W 1 ? 8 ? 3IGM 1 ? 8 ? 1 8 4 2 3IGM X 1 ? 8 ? 3IGM 1 ? 8 ? 1 8 5 2 3IGM C 1 ? 8 ? 3IGM 1 ? 8 ? 1 8 6 2 3IGM D 1 ? 8 ? 3IGM 1 ? 8 ? 1 8 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IGM GLY B 1 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 59 1 1 3IGM SER B 2 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 60 2 1 3IGM HIS B 3 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 61 3 1 3IGM MET B 4 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 62 4 1 3IGM LEU B 66 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 124 5 1 3IGM GLU B 67 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 125 6 1 3IGM PRO B 68 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 126 7 1 3IGM GLY B 69 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 127 8 1 3IGM GLY B 70 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 128 9 1 3IGM SER B 71 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 129 10 1 3IGM GLN B 72 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 130 11 1 3IGM PHE B 73 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 131 12 1 3IGM ILE B 74 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 132 13 1 3IGM VAL B 75 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 133 14 1 3IGM THR B 76 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 134 15 1 3IGM ASP B 77 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 135 16 2 3IGM GLY A 1 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 59 17 2 3IGM SER A 2 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 60 18 2 3IGM HIS A 3 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 61 19 2 3IGM MET A 4 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 62 20 2 3IGM LEU A 66 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 124 21 2 3IGM GLU A 67 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 125 22 2 3IGM PRO A 68 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 126 23 2 3IGM GLY A 69 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 127 24 2 3IGM GLY A 70 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 128 25 2 3IGM SER A 71 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 129 26 2 3IGM GLN A 72 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 130 27 2 3IGM PHE A 73 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 131 28 2 3IGM ILE A 74 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 132 29 2 3IGM VAL A 75 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 133 30 2 3IGM THR A 76 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 134 31 2 3IGM ASP A 77 ? UNP Q8IKH2 ? ? 'EXPRESSION TAG' 135 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IGM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.1 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.5M-1.25M 1,6-hexanediol 100mM NaOAc pH 5.1 @295K 10mM CoCl2 10-20% ethylene glycol, VAPOR DIFFUSION, HANGING DROP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-12-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97886 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97886 # _reflns.entry_id 3IGM _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50. _reflns.d_resolution_high 2.2 _reflns.number_obs 10478 _reflns.number_all 11402 _reflns.percent_possible_obs 91.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_netI_over_sigmaI 32.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.26 _reflns_shell.percent_possible_all 72.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.381 _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy 9.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3IGM _refine.ls_number_reflns_obs 10478 _refine.ls_number_reflns_all 10478 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.55 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 91.78 _refine.ls_R_factor_obs 0.21681 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21448 _refine.ls_R_factor_R_free 0.26268 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 526 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.B_iso_mean 48.953 _refine.aniso_B[1][1] 2.84 _refine.aniso_B[2][2] -1.48 _refine.aniso_B[3][3] -1.36 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.334 _refine.pdbx_overall_ESU_R_Free 0.243 _refine.overall_SU_ML 0.180 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.931 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 971 _refine_hist.pdbx_number_atoms_nucleic_acid 623 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1691 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 29.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 1695 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.348 2.394 ? 2400 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.075 5.000 ? 116 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 21.052 21.020 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.458 15.000 ? 179 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.111 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 245 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1090 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.617 1.500 ? 585 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.184 2.000 ? 927 'X-RAY DIFFRACTION' ? r_scbond_it 1.127 3.000 ? 1110 'X-RAY DIFFRACTION' ? r_scangle_it 1.805 4.500 ? 1473 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.262 _refine_ls_shell.number_reflns_R_work 581 _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.percent_reflns_obs 69.25 _refine_ls_shell.R_factor_R_free 0.422 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3IGM _struct.title 'A 2.2A crystal structure of the AP2 domain of PF14_0633 from P. falciparum, bound as a domain-swapped dimer to its cognate DNA' _struct.pdbx_descriptor 'PF14_0633 protein/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IGM _struct_keywords.pdbx_keywords Transcription/DNA _struct_keywords.text 'AP2 domain, Plasmodium falciparum, specific transcription factor, PROTEIN-DNA COMPLEX, Transcription-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_biol.id 1 _struct_biol.details 'BIOLOGICAL ASSEMBLY OF PROTEIN IS DIMER' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 39 ? VAL A 58 ? HIS B 97 VAL B 116 1 ? 20 HELX_P HELX_P2 2 HIS D 39 ? GLU D 59 ? HIS A 97 GLU A 117 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 D CYS 18 SG ? ? B CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? 2.999 ? hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 7 N3 ? ? W DG 2 X DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 7 O2 ? ? W DG 2 X DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 7 N4 ? ? W DG 2 X DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 6 N1 ? ? W DC 3 X DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 6 O6 ? ? W DC 3 X DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 6 N2 ? ? W DC 3 X DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 5 N3 ? ? W DA 4 X DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 5 O4 ? ? W DA 4 X DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 4 N1 ? ? W DT 5 X DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 4 N6 ? ? W DT 5 X DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 3 N3 ? ? W DG 6 X DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 3 O2 ? ? W DG 6 X DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 3 N4 ? ? W DG 6 X DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 2 N1 ? ? W DC 7 X DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 2 O6 ? ? W DC 7 X DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 2 N2 ? ? W DC 7 X DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 1 N3 ? ? W DA 8 X DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 1 O4 ? ? W DA 8 X DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 7 N3 ? ? C DG 2 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 7 O2 ? ? C DG 2 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 7 N4 ? ? C DG 2 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? E DC 3 N3 ? ? ? 1_555 F DG 6 N1 ? ? C DC 3 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DG 6 O6 ? ? C DC 3 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DG 6 N2 ? ? C DC 3 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 5 N3 ? ? C DA 4 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 5 O4 ? ? C DA 4 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 4 N1 ? ? C DT 5 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 4 N6 ? ? C DT 5 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 3 N3 ? ? C DG 6 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 3 O2 ? ? C DG 6 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 3 N4 ? ? C DG 6 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 2 N1 ? ? C DC 7 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 2 O6 ? ? C DC 7 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 2 N2 ? ? C DC 7 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? E DA 8 N6 ? ? ? 1_555 F DT 1 O4 ? ? C DA 8 D DT 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog36 hydrog ? ? E DA 8 N7 ? ? ? 1_555 F DT 1 N3 ? ? C DA 8 D DT 1 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 11 ? ASN A 14 ? VAL B 69 ASN B 72 A 2 ALA A 19 ? ASP A 26 ? ALA B 77 ASP B 84 A 3 SER A 29 ? PHE A 35 ? SER B 87 PHE B 93 B 1 VAL D 11 ? ASN D 14 ? VAL A 69 ASN A 72 B 2 ALA D 19 ? ASP D 26 ? ALA A 77 ASP A 84 B 3 SER D 29 ? PHE D 35 ? SER A 87 PHE A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 14 ? N ASN B 72 O ALA A 19 ? O ALA B 77 A 2 3 N TRP A 20 ? N TRP B 78 O PHE A 35 ? O PHE B 93 B 1 2 N SER D 12 ? N SER A 70 O LEU D 21 ? O LEU A 79 B 2 3 N PHE D 24 ? N PHE A 82 O ARG D 31 ? O ARG A 89 # _database_PDB_matrix.entry_id 3IGM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IGM _atom_sites.fract_transf_matrix[1][1] 0.022826 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017001 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005640 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 59 ? ? ? B . n A 1 2 SER 2 60 ? ? ? B . n A 1 3 HIS 3 61 ? ? ? B . n A 1 4 MET 4 62 62 MET MET B . n A 1 5 SER 5 63 63 SER SER B . n A 1 6 SER 6 64 64 SER SER B . n A 1 7 GLY 7 65 65 GLY GLY B . n A 1 8 TYR 8 66 66 TYR TYR B . n A 1 9 PRO 9 67 67 PRO PRO B . n A 1 10 GLY 10 68 68 GLY GLY B . n A 1 11 VAL 11 69 69 VAL VAL B . n A 1 12 SER 12 70 70 SER SER B . n A 1 13 TRP 13 71 71 TRP TRP B . n A 1 14 ASN 14 72 72 ASN ASN B . n A 1 15 LYS 15 73 73 LYS LYS B . n A 1 16 ARG 16 74 74 ARG ARG B . n A 1 17 MET 17 75 75 MET MET B . n A 1 18 CYS 18 76 76 CYS CYS B . n A 1 19 ALA 19 77 77 ALA ALA B . n A 1 20 TRP 20 78 78 TRP TRP B . n A 1 21 LEU 21 79 79 LEU LEU B . n A 1 22 ALA 22 80 80 ALA ALA B . n A 1 23 PHE 23 81 81 PHE PHE B . n A 1 24 PHE 24 82 82 PHE PHE B . n A 1 25 TYR 25 83 83 TYR TYR B . n A 1 26 ASP 26 84 84 ASP ASP B . n A 1 27 GLY 27 85 85 GLY GLY B . n A 1 28 ALA 28 86 86 ALA ALA B . n A 1 29 SER 29 87 87 SER SER B . n A 1 30 ARG 30 88 88 ARG ARG B . n A 1 31 ARG 31 89 89 ARG ARG B . n A 1 32 SER 32 90 90 SER SER B . n A 1 33 ARG 33 91 91 ARG ARG B . n A 1 34 THR 34 92 92 THR THR B . n A 1 35 PHE 35 93 93 PHE PHE B . n A 1 36 HIS 36 94 94 HIS HIS B . n A 1 37 PRO 37 95 95 PRO PRO B . n A 1 38 LYS 38 96 96 LYS LYS B . n A 1 39 HIS 39 97 97 HIS HIS B . n A 1 40 PHE 40 98 98 PHE PHE B . n A 1 41 ASN 41 99 99 ASN ASN B . n A 1 42 MET 42 100 100 MET MET B . n A 1 43 ASP 43 101 101 ASP ASP B . n A 1 44 LYS 44 102 102 LYS LYS B . n A 1 45 GLU 45 103 103 GLU GLU B . n A 1 46 LYS 46 104 104 LYS LYS B . n A 1 47 ALA 47 105 105 ALA ALA B . n A 1 48 ARG 48 106 106 ARG ARG B . n A 1 49 LEU 49 107 107 LEU LEU B . n A 1 50 ALA 50 108 108 ALA ALA B . n A 1 51 ALA 51 109 109 ALA ALA B . n A 1 52 VAL 52 110 110 VAL VAL B . n A 1 53 GLU 53 111 111 GLU GLU B . n A 1 54 PHE 54 112 112 PHE PHE B . n A 1 55 MET 55 113 113 MET MET B . n A 1 56 LYS 56 114 114 LYS LYS B . n A 1 57 THR 57 115 115 THR THR B . n A 1 58 VAL 58 116 116 VAL VAL B . n A 1 59 GLU 59 117 117 GLU GLU B . n A 1 60 ASN 60 118 118 ASN ASN B . n A 1 61 ASN 61 119 119 ASN ASN B . n A 1 62 GLY 62 120 120 GLY GLY B . n A 1 63 ARG 63 121 121 ARG ARG B . n A 1 64 LYS 64 122 122 LYS LYS B . n A 1 65 LYS 65 123 123 LYS LYS B . n A 1 66 LEU 66 124 ? ? ? B . n A 1 67 GLU 67 125 ? ? ? B . n A 1 68 PRO 68 126 ? ? ? B . n A 1 69 GLY 69 127 ? ? ? B . n A 1 70 GLY 70 128 ? ? ? B . n A 1 71 SER 71 129 ? ? ? B . n A 1 72 GLN 72 130 ? ? ? B . n A 1 73 PHE 73 131 ? ? ? B . n A 1 74 ILE 74 132 ? ? ? B . n A 1 75 VAL 75 133 ? ? ? B . n A 1 76 THR 76 134 ? ? ? B . n A 1 77 ASP 77 135 ? ? ? B . n B 2 1 DT 1 1 1 DT T W . n B 2 2 DG 2 2 2 DG G W . n B 2 3 DC 3 3 3 DC C W . n B 2 4 DA 4 4 4 DA A W . n B 2 5 DT 5 5 5 DT T W . n B 2 6 DG 6 6 6 DG G W . n B 2 7 DC 7 7 7 DC C W . n B 2 8 DA 8 8 8 DA A W . n C 2 1 DT 1 1 1 DT T X . n C 2 2 DG 2 2 2 DG G X . n C 2 3 DC 3 3 3 DC C X . n C 2 4 DA 4 4 4 DA A X . n C 2 5 DT 5 5 5 DT T X . n C 2 6 DG 6 6 6 DG G X . n C 2 7 DC 7 7 7 DC C X . n C 2 8 DA 8 8 8 DA A X . n D 1 1 GLY 1 59 ? ? ? A . n D 1 2 SER 2 60 ? ? ? A . n D 1 3 HIS 3 61 ? ? ? A . n D 1 4 MET 4 62 62 MET MET A . n D 1 5 SER 5 63 63 SER SER A . n D 1 6 SER 6 64 64 SER SER A . n D 1 7 GLY 7 65 65 GLY GLY A . n D 1 8 TYR 8 66 66 TYR TYR A . n D 1 9 PRO 9 67 67 PRO PRO A . n D 1 10 GLY 10 68 68 GLY GLY A . n D 1 11 VAL 11 69 69 VAL VAL A . n D 1 12 SER 12 70 70 SER SER A . n D 1 13 TRP 13 71 71 TRP TRP A . n D 1 14 ASN 14 72 72 ASN ASN A . n D 1 15 LYS 15 73 73 LYS LYS A . n D 1 16 ARG 16 74 74 ARG ARG A . n D 1 17 MET 17 75 75 MET MET A . n D 1 18 CYS 18 76 76 CYS CYS A . n D 1 19 ALA 19 77 77 ALA ALA A . n D 1 20 TRP 20 78 78 TRP TRP A . n D 1 21 LEU 21 79 79 LEU LEU A . n D 1 22 ALA 22 80 80 ALA ALA A . n D 1 23 PHE 23 81 81 PHE PHE A . n D 1 24 PHE 24 82 82 PHE PHE A . n D 1 25 TYR 25 83 83 TYR TYR A . n D 1 26 ASP 26 84 84 ASP ASP A . n D 1 27 GLY 27 85 85 GLY GLY A . n D 1 28 ALA 28 86 86 ALA ALA A . n D 1 29 SER 29 87 87 SER SER A . n D 1 30 ARG 30 88 88 ARG ARG A . n D 1 31 ARG 31 89 89 ARG ARG A . n D 1 32 SER 32 90 90 SER SER A . n D 1 33 ARG 33 91 91 ARG ARG A . n D 1 34 THR 34 92 92 THR THR A . n D 1 35 PHE 35 93 93 PHE PHE A . n D 1 36 HIS 36 94 94 HIS HIS A . n D 1 37 PRO 37 95 95 PRO PRO A . n D 1 38 LYS 38 96 96 LYS LYS A . n D 1 39 HIS 39 97 97 HIS HIS A . n D 1 40 PHE 40 98 98 PHE PHE A . n D 1 41 ASN 41 99 99 ASN ASN A . n D 1 42 MET 42 100 100 MET MET A . n D 1 43 ASP 43 101 101 ASP ASP A . n D 1 44 LYS 44 102 102 LYS LYS A . n D 1 45 GLU 45 103 103 GLU GLU A . n D 1 46 LYS 46 104 104 LYS LYS A . n D 1 47 ALA 47 105 105 ALA ALA A . n D 1 48 ARG 48 106 106 ARG ARG A . n D 1 49 LEU 49 107 107 LEU LEU A . n D 1 50 ALA 50 108 108 ALA ALA A . n D 1 51 ALA 51 109 109 ALA ALA A . n D 1 52 VAL 52 110 110 VAL VAL A . n D 1 53 GLU 53 111 111 GLU GLU A . n D 1 54 PHE 54 112 112 PHE PHE A . n D 1 55 MET 55 113 113 MET MET A . n D 1 56 LYS 56 114 114 LYS LYS A . n D 1 57 THR 57 115 115 THR THR A . n D 1 58 VAL 58 116 116 VAL VAL A . n D 1 59 GLU 59 117 117 GLU GLU A . n D 1 60 ASN 60 118 ? ? ? A . n D 1 61 ASN 61 119 ? ? ? A . n D 1 62 GLY 62 120 ? ? ? A . n D 1 63 ARG 63 121 ? ? ? A . n D 1 64 LYS 64 122 ? ? ? A . n D 1 65 LYS 65 123 ? ? ? A . n D 1 66 LEU 66 124 ? ? ? A . n D 1 67 GLU 67 125 ? ? ? A . n D 1 68 PRO 68 126 ? ? ? A . n D 1 69 GLY 69 127 ? ? ? A . n D 1 70 GLY 70 128 ? ? ? A . n D 1 71 SER 71 129 ? ? ? A . n D 1 72 GLN 72 130 ? ? ? A . n D 1 73 PHE 73 131 ? ? ? A . n D 1 74 ILE 74 132 ? ? ? A . n D 1 75 VAL 75 133 ? ? ? A . n D 1 76 THR 76 134 ? ? ? A . n D 1 77 ASP 77 135 ? ? ? A . n E 2 1 DT 1 1 1 DT T C . n E 2 2 DG 2 2 2 DG G C . n E 2 3 DC 3 3 3 DC C C . n E 2 4 DA 4 4 4 DA A C . n E 2 5 DT 5 5 5 DT T C . n E 2 6 DG 6 6 6 DG G C . n E 2 7 DC 7 7 7 DC C C . n E 2 8 DA 8 8 8 DA A C . n F 2 1 DT 1 1 1 DT T D . n F 2 2 DG 2 2 2 DG G D . n F 2 3 DC 3 3 3 DC C D . n F 2 4 DA 4 4 4 DA A D . n F 2 5 DT 5 5 5 DT T D . n F 2 6 DG 6 6 6 DG G D . n F 2 7 DC 7 7 7 DC C D . n F 2 8 DA 8 8 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 1 1 HOH HOH B . G 3 HOH 2 2 2 HOH HOH B . G 3 HOH 3 10 10 HOH HOH B . G 3 HOH 4 12 12 HOH HOH B . G 3 HOH 5 15 15 HOH HOH B . G 3 HOH 6 19 19 HOH HOH B . G 3 HOH 7 23 23 HOH HOH B . G 3 HOH 8 26 26 HOH HOH B . G 3 HOH 9 30 30 HOH HOH B . G 3 HOH 10 31 31 HOH HOH B . G 3 HOH 11 33 33 HOH HOH B . G 3 HOH 12 34 34 HOH HOH B . G 3 HOH 13 39 39 HOH HOH B . G 3 HOH 14 41 41 HOH HOH B . G 3 HOH 15 43 43 HOH HOH B . G 3 HOH 16 46 46 HOH HOH B . G 3 HOH 17 49 49 HOH HOH B . G 3 HOH 18 54 54 HOH HOH B . G 3 HOH 19 58 58 HOH HOH B . G 3 HOH 20 136 60 HOH HOH B . G 3 HOH 21 137 69 HOH HOH B . G 3 HOH 22 138 71 HOH HOH B . G 3 HOH 23 139 73 HOH HOH B . G 3 HOH 24 140 82 HOH HOH B . G 3 HOH 25 141 90 HOH HOH B . G 3 HOH 26 142 91 HOH HOH B . G 3 HOH 27 143 97 HOH HOH B . H 3 HOH 1 13 13 HOH HOH W . H 3 HOH 2 18 18 HOH HOH W . H 3 HOH 3 20 20 HOH HOH W . H 3 HOH 4 29 29 HOH HOH W . H 3 HOH 5 36 36 HOH HOH W . H 3 HOH 6 38 38 HOH HOH W . H 3 HOH 7 40 40 HOH HOH W . H 3 HOH 8 45 45 HOH HOH W . H 3 HOH 9 47 47 HOH HOH W . H 3 HOH 10 55 55 HOH HOH W . H 3 HOH 11 56 56 HOH HOH W . H 3 HOH 12 57 57 HOH HOH W . H 3 HOH 13 78 78 HOH HOH W . H 3 HOH 14 79 79 HOH HOH W . H 3 HOH 15 80 80 HOH HOH W . H 3 HOH 16 93 93 HOH HOH W . H 3 HOH 17 96 96 HOH HOH W . I 3 HOH 1 9 9 HOH HOH X . I 3 HOH 2 10 5 HOH HOH X . I 3 HOH 3 14 14 HOH HOH X . I 3 HOH 4 17 17 HOH HOH X . I 3 HOH 5 24 24 HOH HOH X . I 3 HOH 6 25 25 HOH HOH X . I 3 HOH 7 27 27 HOH HOH X . I 3 HOH 8 59 59 HOH HOH X . I 3 HOH 9 72 72 HOH HOH X . I 3 HOH 10 92 92 HOH HOH X . I 3 HOH 11 94 94 HOH HOH X . I 3 HOH 12 95 95 HOH HOH X . J 3 HOH 1 3 3 HOH HOH A . J 3 HOH 2 4 4 HOH HOH A . J 3 HOH 3 7 7 HOH HOH A . J 3 HOH 4 11 11 HOH HOH A . J 3 HOH 5 16 16 HOH HOH A . J 3 HOH 6 21 21 HOH HOH A . J 3 HOH 7 22 22 HOH HOH A . J 3 HOH 8 28 28 HOH HOH A . J 3 HOH 9 32 32 HOH HOH A . J 3 HOH 10 37 37 HOH HOH A . J 3 HOH 11 42 42 HOH HOH A . J 3 HOH 12 44 44 HOH HOH A . J 3 HOH 13 48 48 HOH HOH A . J 3 HOH 14 50 50 HOH HOH A . J 3 HOH 15 136 61 HOH HOH A . J 3 HOH 16 137 62 HOH HOH A . J 3 HOH 17 138 64 HOH HOH A . J 3 HOH 18 139 65 HOH HOH A . J 3 HOH 19 140 66 HOH HOH A . J 3 HOH 20 141 67 HOH HOH A . J 3 HOH 21 142 70 HOH HOH A . J 3 HOH 22 143 74 HOH HOH A . J 3 HOH 23 144 75 HOH HOH A . J 3 HOH 24 145 76 HOH HOH A . J 3 HOH 25 146 77 HOH HOH A . J 3 HOH 26 147 81 HOH HOH A . J 3 HOH 27 148 83 HOH HOH A . J 3 HOH 28 149 84 HOH HOH A . J 3 HOH 29 150 85 HOH HOH A . J 3 HOH 30 151 86 HOH HOH A . J 3 HOH 31 152 87 HOH HOH A . J 3 HOH 32 153 88 HOH HOH A . J 3 HOH 33 154 89 HOH HOH A . K 3 HOH 1 9 6 HOH HOH C . K 3 HOH 2 10 8 HOH HOH C . K 3 HOH 3 51 51 HOH HOH C . K 3 HOH 4 52 52 HOH HOH C . K 3 HOH 5 68 68 HOH HOH C . L 3 HOH 1 35 35 HOH HOH D . L 3 HOH 2 53 53 HOH HOH D . L 3 HOH 3 63 63 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7720 ? 1 MORE -62 ? 1 'SSA (A^2)' 11040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Source and taxonomy' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 14.4456 -5.6150 -20.3140 0.0926 0.0398 0.0680 -0.0118 0.0417 -0.0240 1.4607 0.5445 9.6832 -0.2370 3.5098 0.0132 0.1729 0.0412 -0.2141 0.0021 -0.1200 0.1298 0.0889 0.4024 0.0549 'X-RAY DIFFRACTION' 2 ? refined 9.9642 -1.0769 -27.3083 0.1110 0.0943 0.1039 -0.0423 0.0154 -0.0338 1.1839 0.2593 9.8892 -0.3430 2.3768 -1.5690 -0.0328 0.0668 -0.0340 0.0887 0.0878 0.0115 -0.0185 0.2432 -0.2973 'X-RAY DIFFRACTION' 3 ? refined 27.6921 -1.3296 -13.2621 0.1512 0.1328 0.2627 -0.0507 0.0709 -0.0298 2.8765 4.8339 5.3028 -1.0093 -0.6642 1.8028 0.0414 0.0789 -0.1204 0.1707 0.1645 -0.9101 -0.1823 -0.1362 0.6339 'X-RAY DIFFRACTION' 4 ? refined 13.7092 12.1749 -33.7973 0.1029 0.0643 0.0904 -0.0353 -0.0221 -0.0144 4.7050 2.8098 3.9339 0.5541 -0.6124 0.6006 -0.1899 0.1868 0.0031 0.1890 0.4752 -0.0628 0.2997 -0.3009 0.2616 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 62 A 123 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 62 B 117 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 1 C 8 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 D 1 D 7 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 W 1 W 8 ? . . . . ? 'X-RAY DIFFRACTION' 6 4 X 1 X 8 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 MLPHARE phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" W DT 1 ? ? "C1'" W DT 1 ? ? N1 W DT 1 ? ? 114.25 108.30 5.95 0.30 N 2 1 "C3'" W DT 5 ? ? "O3'" W DT 5 ? ? P W DG 6 ? ? 127.21 119.70 7.51 1.20 Y 3 1 "O4'" W DG 6 ? ? "C1'" W DG 6 ? ? N9 W DG 6 ? ? 103.32 108.00 -4.68 0.70 N 4 1 "O4'" X DC 3 ? ? "C1'" X DC 3 ? ? N1 X DC 3 ? ? 111.74 108.30 3.44 0.30 N 5 1 "O4'" C DT 1 ? ? "C1'" C DT 1 ? ? N1 C DT 1 ? ? 110.42 108.30 2.12 0.30 N 6 1 "C3'" C DA 4 ? ? "C2'" C DA 4 ? ? "C1'" C DA 4 ? ? 96.86 102.40 -5.54 0.80 N 7 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 112.80 108.30 4.50 0.30 N 8 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 113.36 108.30 5.06 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 59 ? A GLY 1 2 1 Y 1 B SER 60 ? A SER 2 3 1 Y 1 B HIS 61 ? A HIS 3 4 1 Y 1 B LEU 124 ? A LEU 66 5 1 Y 1 B GLU 125 ? A GLU 67 6 1 Y 1 B PRO 126 ? A PRO 68 7 1 Y 1 B GLY 127 ? A GLY 69 8 1 Y 1 B GLY 128 ? A GLY 70 9 1 Y 1 B SER 129 ? A SER 71 10 1 Y 1 B GLN 130 ? A GLN 72 11 1 Y 1 B PHE 131 ? A PHE 73 12 1 Y 1 B ILE 132 ? A ILE 74 13 1 Y 1 B VAL 133 ? A VAL 75 14 1 Y 1 B THR 134 ? A THR 76 15 1 Y 1 B ASP 135 ? A ASP 77 16 1 Y 1 A GLY 59 ? D GLY 1 17 1 Y 1 A SER 60 ? D SER 2 18 1 Y 1 A HIS 61 ? D HIS 3 19 1 Y 1 A ASN 118 ? D ASN 60 20 1 Y 1 A ASN 119 ? D ASN 61 21 1 Y 1 A GLY 120 ? D GLY 62 22 1 Y 1 A ARG 121 ? D ARG 63 23 1 Y 1 A LYS 122 ? D LYS 64 24 1 Y 1 A LYS 123 ? D LYS 65 25 1 Y 1 A LEU 124 ? D LEU 66 26 1 Y 1 A GLU 125 ? D GLU 67 27 1 Y 1 A PRO 126 ? D PRO 68 28 1 Y 1 A GLY 127 ? D GLY 69 29 1 Y 1 A GLY 128 ? D GLY 70 30 1 Y 1 A SER 129 ? D SER 71 31 1 Y 1 A GLN 130 ? D GLN 72 32 1 Y 1 A PHE 131 ? D PHE 73 33 1 Y 1 A ILE 132 ? D ILE 74 34 1 Y 1 A VAL 133 ? D VAL 75 35 1 Y 1 A THR 134 ? D THR 76 36 1 Y 1 A ASP 135 ? D ASP 77 37 1 Y 1 D DA 8 ? F DA 8 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3IGM 'double helix' 3IGM 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 C DC 7 1_555 -0.334 -0.131 -0.101 -6.223 -5.929 0.117 1 W_DG2:DC7_X W 2 ? X 7 ? 19 1 1 B DC 3 1_555 C DG 6 1_555 0.265 -0.075 0.459 -5.907 -8.868 0.755 2 W_DC3:DG6_X W 3 ? X 6 ? 19 1 1 B DA 4 1_555 C DT 5 1_555 0.083 0.044 0.262 3.600 -18.790 10.833 3 W_DA4:DT5_X W 4 ? X 5 ? 20 1 1 B DT 5 1_555 C DA 4 1_555 -0.129 -0.306 -0.099 3.780 -12.049 -1.429 4 W_DT5:DA4_X W 5 ? X 4 ? 20 1 1 B DG 6 1_555 C DC 3 1_555 -0.222 -0.203 -0.026 -13.155 -1.824 -0.256 5 W_DG6:DC3_X W 6 ? X 3 ? 19 1 1 B DC 7 1_555 C DG 2 1_555 0.260 -0.054 0.466 -9.726 -7.536 -0.887 6 W_DC7:DG2_X W 7 ? X 2 ? 19 1 1 B DA 8 1_555 C DT 1 1_555 -0.260 -0.373 0.373 11.219 -10.300 -0.653 7 W_DA8:DT1_X W 8 ? X 1 ? 20 1 1 E DG 2 1_555 F DC 7 1_555 -0.161 0.021 0.009 -13.744 -3.470 5.416 8 C_DG2:DC7_D C 2 ? D 7 ? 19 1 1 E DC 3 1_555 F DG 6 1_555 -0.131 -0.151 0.320 -12.423 -12.095 -4.741 9 C_DC3:DG6_D C 3 ? D 6 ? 19 1 1 E DA 4 1_555 F DT 5 1_555 0.237 0.029 0.375 6.567 -12.746 0.161 10 C_DA4:DT5_D C 4 ? D 5 ? 20 1 1 E DT 5 1_555 F DA 4 1_555 0.089 -0.231 0.097 1.134 -24.057 -6.457 11 C_DT5:DA4_D C 5 ? D 4 ? 20 1 1 E DG 6 1_555 F DC 3 1_555 -0.609 -0.254 0.142 -10.159 -2.946 2.435 12 C_DG6:DC3_D C 6 ? D 3 ? 19 1 1 E DC 7 1_555 F DG 2 1_555 0.232 -0.147 0.061 4.108 -2.687 1.936 13 C_DC7:DG2_D C 7 ? D 2 ? 19 1 1 E DA 8 1_555 F DT 1 1_555 0.429 -3.682 -0.587 11.539 -1.402 77.697 14 C_DA8:DT1_D C 8 ? D 1 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 C DC 7 1_555 B DC 3 1_555 C DG 6 1_555 0.195 -0.337 3.332 -3.849 3.536 29.141 -1.414 -1.203 3.218 6.956 7.572 29.596 1 WW_DG2DC3:DG6DC7_XX W 2 ? X 7 ? W 3 ? X 6 ? 1 B DC 3 1_555 C DG 6 1_555 B DA 4 1_555 C DT 5 1_555 0.397 1.193 3.225 3.665 2.570 39.439 1.457 -0.157 3.315 3.793 -5.410 39.682 2 WW_DC3DA4:DT5DG6_XX W 3 ? X 6 ? W 4 ? X 5 ? 1 B DA 4 1_555 C DT 5 1_555 B DT 5 1_555 C DA 4 1_555 -0.575 -0.290 3.286 -0.703 -3.701 31.761 0.152 0.916 3.309 -6.733 1.279 31.978 3 WW_DA4DT5:DA4DT5_XX W 4 ? X 5 ? W 5 ? X 4 ? 1 B DT 5 1_555 C DA 4 1_555 B DG 6 1_555 C DC 3 1_555 0.242 0.156 3.558 -2.929 2.179 45.507 -0.006 -0.591 3.540 2.811 3.779 45.646 4 WW_DT5DG6:DC3DA4_XX W 5 ? X 4 ? W 6 ? X 3 ? 1 B DG 6 1_555 C DC 3 1_555 B DC 7 1_555 C DG 2 1_555 -0.712 -0.347 3.266 -4.306 4.375 29.400 -1.575 0.483 3.250 8.503 8.371 30.020 5 WW_DG6DC7:DG2DC3_XX W 6 ? X 3 ? W 7 ? X 2 ? 1 B DC 7 1_555 C DG 2 1_555 B DA 8 1_555 C DT 1 1_555 0.615 0.912 2.911 1.629 7.837 31.082 0.341 -0.840 3.071 14.330 -2.979 32.071 6 WW_DC7DA8:DT1DG2_XX W 7 ? X 2 ? W 8 ? X 1 ? 1 E DG 2 1_555 F DC 7 1_555 E DC 3 1_555 F DG 6 1_555 -0.342 -0.287 3.328 -2.218 0.898 29.700 -0.749 0.194 3.334 1.749 4.318 29.794 7 CC_DG2DC3:DG6DC7_DD C 2 ? D 7 ? C 3 ? D 6 ? 1 E DC 3 1_555 F DG 6 1_555 E DA 4 1_555 F DT 5 1_555 0.378 0.832 2.976 -0.880 5.901 36.980 0.577 -0.696 3.059 9.230 1.376 37.441 8 CC_DC3DA4:DT5DG6_DD C 3 ? D 6 ? C 4 ? D 5 ? 1 E DA 4 1_555 F DT 5 1_555 E DT 5 1_555 F DA 4 1_555 -0.990 0.306 3.445 -1.180 -9.837 39.997 1.552 1.274 3.308 -14.121 1.694 41.157 9 CC_DA4DT5:DA4DT5_DD C 4 ? D 5 ? C 5 ? D 4 ? 1 E DT 5 1_555 F DA 4 1_555 E DG 6 1_555 F DC 3 1_555 0.877 0.436 3.479 -0.545 3.142 40.737 0.256 -1.320 3.490 4.505 0.782 40.856 10 CC_DT5DG6:DC3DA4_DD C 5 ? D 4 ? C 6 ? D 3 ? 1 E DG 6 1_555 F DC 3 1_555 E DC 7 1_555 F DG 2 1_555 -0.364 0.055 2.948 -0.490 7.036 28.321 -1.279 0.627 2.883 14.105 0.982 29.169 11 CC_DG6DC7:DG2DC3_DD C 6 ? D 3 ? C 7 ? D 2 ? 1 E DC 7 1_555 F DG 2 1_555 E DA 8 1_555 F DT 1 1_555 -2.219 3.773 -0.947 163.154 -19.756 -147.746 -1.898 -1.189 -0.178 9.915 81.879 -175.664 12 CC_DC7DA8:DT1DG2_DD C 7 ? D 2 ? C 8 ? D 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #