HEADER LIGASE 30-JUL-09 3IHL TITLE HUMAN CTPS2 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTP SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDEUS 1-275; COMPND 5 SYNONYM: UTP--AMMONIA LIGASE 2, CTP SYNTHETASE 2; COMPND 6 EC: 6.3.4.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTPS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH2 KEYWDS DOMAIN SWAPPING, STRUCTURAL GENOMICS, SGC STOCKHOLM, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, ATP-BINDING, GLUTAMINE AMIDOTRANSFERASE, KEYWDS 3 LIGASE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PYRIMIDINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.MOCHE,M.I.SIPONEN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON, AUTHOR 3 I.JOHANSSON,T.KARLBERG,T.KOTENYOVA,A.KOTZSCH,T.KRAGH NIELSEN, AUTHOR 4 T.NYMAN,C.PERSSON,A.K.ROOS,J.SAGEMARK,H.SCHUELER,P.SCHUTZ, AUTHOR 5 A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN, AUTHOR 6 M.WISNIEWSKA,P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3IHL 1 REMARK SEQADV REVDAT 3 24-JAN-18 3IHL 1 AUTHOR REVDAT 2 13-JUL-11 3IHL 1 VERSN REVDAT 1 13-OCT-09 3IHL 0 JRNL AUTH M.MOCHE,M.I.SIPONEN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA, JRNL AUTH 2 R.COLLINS,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND, JRNL AUTH 3 M.HAMMARSTROM,A.JOHANSSON,I.JOHANSSON,T.KARLBERG, JRNL AUTH 4 T.KOTENYOVA,A.KOTZSCH,T.KRAGH NIELSEN,T.NYMAN,C.PERSSON, JRNL AUTH 5 A.K.ROOS,J.SAGEMARK,H.SCHUELER,P.SCHUTZ,A.G.THORSELL, JRNL AUTH 6 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA, JRNL AUTH 7 P.NORDLUND JRNL TITL HUMAN CTPS2 CRYSTAL STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1851 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -2.39000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3709 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2510 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5031 ; 1.342 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6181 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 5.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;41.798 ;24.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;14.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3991 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2294 ; 0.436 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 934 ; 0.070 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3751 ; 0.880 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 1.447 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1280 ; 2.470 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 73.7652 32.5190 37.1564 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.1172 REMARK 3 T33: 0.1457 T12: -0.0580 REMARK 3 T13: 0.0159 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.8891 L22: 1.2756 REMARK 3 L33: 4.6418 L12: -0.0184 REMARK 3 L13: -1.5066 L23: -0.5315 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0740 S13: -0.3767 REMARK 3 S21: 0.2419 S22: -0.1742 S23: -0.0572 REMARK 3 S31: 0.4183 S32: 0.3281 S33: 0.1909 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3977 13.3546 15.8739 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.2209 REMARK 3 T33: 0.2254 T12: -0.1223 REMARK 3 T13: 0.0321 T23: -0.1805 REMARK 3 L TENSOR REMARK 3 L11: 1.1090 L22: 3.1053 REMARK 3 L33: 2.4415 L12: -0.4802 REMARK 3 L13: -0.2970 L23: 0.1965 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.0087 S13: -0.2499 REMARK 3 S21: 0.2485 S22: -0.0849 S23: 0.2767 REMARK 3 S31: 0.5106 S32: -0.1974 S33: 0.0454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 29.760 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 5.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 5.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SUCCINIC ACID, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 88.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 48 REMARK 465 THR A 49 REMARK 465 PHE A 50 REMARK 465 SER A 51 REMARK 465 PRO A 52 REMARK 465 TYR A 53 REMARK 465 GLU A 54 REMARK 465 HIS A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 VAL A 58 REMARK 465 PHE A 59 REMARK 465 VAL A 60 REMARK 465 LEU A 61 REMARK 465 ASN A 62 REMARK 465 ASP A 63 REMARK 465 GLY A 64 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 ASP A 68 REMARK 465 LEU A 69 REMARK 465 ASP A 70 REMARK 465 LEU A 71 REMARK 465 GLY A 72 REMARK 465 ASN A 73 REMARK 465 TYR A 74 REMARK 465 GLU A 75 REMARK 465 ARG A 76 REMARK 465 PHE A 77 REMARK 465 LEU A 78 REMARK 465 ASP A 79 REMARK 465 ILE A 80 REMARK 465 ASN A 81 REMARK 465 LEU A 82 REMARK 465 TYR A 83 REMARK 465 LYS A 84 REMARK 465 ASP A 85 REMARK 465 ILE A 274 REMARK 465 GLY A 275 REMARK 465 ALA A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 VAL B 67 REMARK 465 ASP B 68 REMARK 465 LEU B 69 REMARK 465 ASP B 70 REMARK 465 LEU B 71 REMARK 465 GLY B 72 REMARK 465 ASN B 73 REMARK 465 TYR B 74 REMARK 465 GLU B 75 REMARK 465 ARG B 76 REMARK 465 PHE B 77 REMARK 465 LEU B 78 REMARK 465 ASP B 79 REMARK 465 ILE B 80 REMARK 465 ASN B 81 REMARK 465 LEU B 82 REMARK 465 TYR B 83 REMARK 465 LYS B 84 REMARK 465 ASP B 85 REMARK 465 ASN B 86 REMARK 465 ASN B 87 REMARK 465 ILE B 88 REMARK 465 THR B 89 REMARK 465 THR B 90 REMARK 465 GLY B 91 REMARK 465 LYS B 92 REMARK 465 ILE B 93 REMARK 465 TYR B 94 REMARK 465 GLN B 95 REMARK 465 HIS B 96 REMARK 465 VAL B 97 REMARK 465 ILE B 98 REMARK 465 ASN B 99 REMARK 465 LYS B 100 REMARK 465 GLU B 101 REMARK 465 ARG B 102 REMARK 465 ARG B 103 REMARK 465 GLY B 104 REMARK 465 ASP B 105 REMARK 465 TYR B 106 REMARK 465 LEU B 107 REMARK 465 GLY B 108 REMARK 465 LYS B 109 REMARK 465 THR B 110 REMARK 465 ILE B 274 REMARK 465 GLY B 275 REMARK 465 ALA B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 -56.25 70.43 REMARK 500 ASP A 134 26.60 45.01 REMARK 500 VAL B 10 -54.46 69.41 REMARK 500 ASP B 134 -127.24 58.35 REMARK 500 ASN B 136 -21.79 67.67 REMARK 500 LYS B 137 -10.86 54.61 REMARK 500 LYS B 171 157.45 69.54 REMARK 500 GLN B 185 113.68 -162.23 REMARK 500 TYR B 251 -37.63 -38.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 DBREF 3IHL A 1 275 UNP Q9NRF8 PYRG2_HUMAN 1 275 DBREF 3IHL B 1 275 UNP Q9NRF8 PYRG2_HUMAN 1 275 SEQADV 3IHL ALA A 276 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS A 277 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS A 278 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS A 279 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS A 280 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS A 281 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS A 282 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL ALA B 276 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS B 277 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS B 278 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS B 279 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS B 280 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS B 281 UNP Q9NRF8 EXPRESSION TAG SEQADV 3IHL HIS B 282 UNP Q9NRF8 EXPRESSION TAG SEQRES 1 A 282 MET LYS TYR ILE LEU VAL THR GLY GLY VAL ILE SER GLY SEQRES 2 A 282 ILE GLY LYS GLY ILE ILE ALA SER SER ILE GLY THR ILE SEQRES 3 A 282 LEU LYS SER CYS GLY LEU ARG VAL THR ALA ILE LYS ILE SEQRES 4 A 282 ASP PRO TYR ILE ASN ILE ASP ALA GLY THR PHE SER PRO SEQRES 5 A 282 TYR GLU HIS GLY GLU VAL PHE VAL LEU ASN ASP GLY GLY SEQRES 6 A 282 GLU VAL ASP LEU ASP LEU GLY ASN TYR GLU ARG PHE LEU SEQRES 7 A 282 ASP ILE ASN LEU TYR LYS ASP ASN ASN ILE THR THR GLY SEQRES 8 A 282 LYS ILE TYR GLN HIS VAL ILE ASN LYS GLU ARG ARG GLY SEQRES 9 A 282 ASP TYR LEU GLY LYS THR VAL GLN VAL VAL PRO HIS ILE SEQRES 10 A 282 THR ASP ALA VAL GLN GLU TRP VAL MET ASN GLN ALA LYS SEQRES 11 A 282 VAL PRO VAL ASP GLY ASN LYS GLU GLU PRO GLN ILE CYS SEQRES 12 A 282 VAL ILE GLU LEU GLY GLY THR ILE GLY ASP ILE GLU GLY SEQRES 13 A 282 MET PRO PHE VAL GLU ALA PHE ARG GLN PHE GLN PHE LYS SEQRES 14 A 282 ALA LYS ARG GLU ASN PHE CYS ASN ILE HIS VAL SER LEU SEQRES 15 A 282 VAL PRO GLN LEU SER ALA THR GLY GLU GLN LYS THR LYS SEQRES 16 A 282 PRO THR GLN ASN SER VAL ARG ALA LEU ARG GLY LEU GLY SEQRES 17 A 282 LEU SER PRO ASP LEU ILE VAL CYS ARG SER SER THR PRO SEQRES 18 A 282 ILE GLU MET ALA VAL LYS GLU LYS ILE SER MET PHE CYS SEQRES 19 A 282 HIS VAL ASN PRO GLU GLN VAL ILE CYS ILE HIS ASP VAL SEQRES 20 A 282 SER SER THR TYR ARG VAL PRO VAL LEU LEU GLU GLU GLN SEQRES 21 A 282 SER ILE VAL LYS TYR PHE LYS GLU ARG LEU HIS LEU PRO SEQRES 22 A 282 ILE GLY ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 282 MET LYS TYR ILE LEU VAL THR GLY GLY VAL ILE SER GLY SEQRES 2 B 282 ILE GLY LYS GLY ILE ILE ALA SER SER ILE GLY THR ILE SEQRES 3 B 282 LEU LYS SER CYS GLY LEU ARG VAL THR ALA ILE LYS ILE SEQRES 4 B 282 ASP PRO TYR ILE ASN ILE ASP ALA GLY THR PHE SER PRO SEQRES 5 B 282 TYR GLU HIS GLY GLU VAL PHE VAL LEU ASN ASP GLY GLY SEQRES 6 B 282 GLU VAL ASP LEU ASP LEU GLY ASN TYR GLU ARG PHE LEU SEQRES 7 B 282 ASP ILE ASN LEU TYR LYS ASP ASN ASN ILE THR THR GLY SEQRES 8 B 282 LYS ILE TYR GLN HIS VAL ILE ASN LYS GLU ARG ARG GLY SEQRES 9 B 282 ASP TYR LEU GLY LYS THR VAL GLN VAL VAL PRO HIS ILE SEQRES 10 B 282 THR ASP ALA VAL GLN GLU TRP VAL MET ASN GLN ALA LYS SEQRES 11 B 282 VAL PRO VAL ASP GLY ASN LYS GLU GLU PRO GLN ILE CYS SEQRES 12 B 282 VAL ILE GLU LEU GLY GLY THR ILE GLY ASP ILE GLU GLY SEQRES 13 B 282 MET PRO PHE VAL GLU ALA PHE ARG GLN PHE GLN PHE LYS SEQRES 14 B 282 ALA LYS ARG GLU ASN PHE CYS ASN ILE HIS VAL SER LEU SEQRES 15 B 282 VAL PRO GLN LEU SER ALA THR GLY GLU GLN LYS THR LYS SEQRES 16 B 282 PRO THR GLN ASN SER VAL ARG ALA LEU ARG GLY LEU GLY SEQRES 17 B 282 LEU SER PRO ASP LEU ILE VAL CYS ARG SER SER THR PRO SEQRES 18 B 282 ILE GLU MET ALA VAL LYS GLU LYS ILE SER MET PHE CYS SEQRES 19 B 282 HIS VAL ASN PRO GLU GLN VAL ILE CYS ILE HIS ASP VAL SEQRES 20 B 282 SER SER THR TYR ARG VAL PRO VAL LEU LEU GLU GLU GLN SEQRES 21 B 282 SER ILE VAL LYS TYR PHE LYS GLU ARG LEU HIS LEU PRO SEQRES 22 B 282 ILE GLY ALA HIS HIS HIS HIS HIS HIS HET ADP A 300 27 HET PO4 A 301 5 HET ADP B 300 27 HET PO4 B 301 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *43(H2 O) HELIX 1 1 GLY A 15 SER A 29 1 15 HELIX 2 2 THR A 90 ARG A 103 1 14 HELIX 3 3 GLN A 112 LYS A 130 1 19 HELIX 4 4 ASP A 153 GLU A 155 5 3 HELIX 5 5 GLY A 156 ALA A 170 1 15 HELIX 6 6 LYS A 171 GLU A 173 5 3 HELIX 7 7 THR A 194 LEU A 207 1 14 HELIX 8 8 GLU A 223 CYS A 234 1 12 HELIX 9 9 ASN A 237 GLU A 239 5 3 HELIX 10 10 TYR A 251 GLN A 260 1 10 HELIX 11 11 SER A 261 HIS A 271 1 11 HELIX 12 12 GLY B 15 CYS B 30 1 16 HELIX 13 13 HIS B 116 VAL B 131 1 16 HELIX 14 14 ASP B 153 GLU B 155 5 3 HELIX 15 15 GLY B 156 LYS B 171 1 16 HELIX 16 16 THR B 194 LEU B 207 1 14 HELIX 17 17 GLU B 223 CYS B 234 1 12 HELIX 18 18 ASN B 237 GLU B 239 5 3 HELIX 19 19 TYR B 251 GLN B 260 1 10 HELIX 20 20 SER B 261 HIS B 271 1 11 SHEET 1 A 7 ASN A 87 THR A 89 0 SHEET 2 A 7 VAL A 34 ASP A 40 1 N ASP A 40 O ILE A 88 SHEET 3 A 7 ILE A 142 LEU A 147 1 O GLU A 146 N ILE A 39 SHEET 4 A 7 LYS A 2 GLY A 8 1 N ILE A 4 O ILE A 145 SHEET 5 A 7 PHE A 175 LEU A 182 1 O ILE A 178 N LEU A 5 SHEET 6 A 7 LEU A 213 SER A 218 1 O ARG A 217 N SER A 181 SHEET 7 A 7 VAL A 241 HIS A 245 1 O ILE A 242 N ILE A 214 SHEET 1 B 6 VAL B 34 ILE B 39 0 SHEET 2 B 6 ILE B 142 LEU B 147 1 O GLU B 146 N ILE B 37 SHEET 3 B 6 LYS B 2 GLY B 8 1 N VAL B 6 O ILE B 145 SHEET 4 B 6 PHE B 175 LEU B 182 1 O ILE B 178 N LEU B 5 SHEET 5 B 6 LEU B 213 SER B 218 1 O VAL B 215 N HIS B 179 SHEET 6 B 6 VAL B 241 HIS B 245 1 O ILE B 242 N ILE B 214 SHEET 1 C 2 GLY B 48 PHE B 50 0 SHEET 2 C 2 VAL B 58 VAL B 60 -1 O VAL B 58 N PHE B 50 CISPEP 1 VAL A 114 PRO A 115 0 7.90 SITE 1 AC1 17 ILE A 14 GLY A 15 LYS A 16 GLY A 17 SITE 2 AC1 17 ILE A 18 LEU A 107 ARG A 217 ILE A 244 SITE 3 AC1 17 HIS A 245 ASP A 246 VAL A 247 VAL A 253 SITE 4 AC1 17 HOH A 290 HOH A 296 PO4 A 301 ALA B 188 SITE 5 AC1 17 THR B 189 SITE 1 AC2 6 SER A 12 GLY A 13 LYS A 16 GLY A 148 SITE 2 AC2 6 GLY A 149 ADP A 300 SITE 1 AC3 14 ALA A 188 THR A 189 GLY B 13 ILE B 14 SITE 2 AC3 14 GLY B 15 LYS B 16 GLY B 17 ILE B 18 SITE 3 AC3 14 ARG B 217 HIS B 245 ASP B 246 VAL B 247 SITE 4 AC3 14 VAL B 253 PO4 B 301 SITE 1 AC4 5 GLY B 13 LYS B 16 GLY B 148 GLY B 149 SITE 2 AC4 5 ADP B 300 CRYST1 168.250 168.250 132.000 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005944 0.003432 0.000000 0.00000 SCALE2 0.000000 0.006863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007576 0.00000