HEADER OXIDOREDUCTASE 31-JUL-09 3II4 TITLE STRUCTURE OF MYCOBACTERIAL LIPOAMIDE DEHYDROGENASE BOUND TO A TITLE 2 TRIAZASPIRODIMETHOXYBENZOYL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIHYDROLIPOAMIDE DEHYDROGENASE, E3 COMPONENT OF ALPHA KETO COMPND 5 ACID DEHYDROGENASE COMPLEXES; COMPND 6 EC: 1.8.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: LPD, LPD RV0462, MT0478, MTV038.06, RV0462; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS DIHYDROLIPOYL DEHYDROGENASE, DHLDH, E3, PROTEIN-N6-(DIHYDROLIPOYL) KEYWDS 2 LYSINE, NAD+ OXIDOREDUCTASE, NAD+, NADH, CYTOPLASM, DISULFIDE BOND, KEYWDS 3 FAD, FLAVOPROTEIN, GLYCOLYSIS, NAD, OXIDOREDUCTASE, REDOX-ACTIVE KEYWDS 4 CENTER EXPDTA X-RAY DIFFRACTION AUTHOR C.D.LIMA REVDAT 5 06-SEP-23 3II4 1 REMARK SEQADV REVDAT 4 24-JUL-19 3II4 1 REMARK REVDAT 3 01-NOV-17 3II4 1 REMARK REVDAT 2 09-MAR-10 3II4 1 JRNL REVDAT 1 26-JAN-10 3II4 0 JRNL AUTH R.BRYK,N.ARANGO,A.VENUGOPAL,J.D.WARREN,Y.H.PARK,M.S.PATEL, JRNL AUTH 2 C.D.LIMA,C.NATHAN JRNL TITL TRIAZASPIRODIMETHOXYBENZOYLS AS SELECTIVE INHIBITORS OF JRNL TITL 2 MYCOBACTERIAL LIPOAMIDE DEHYDROGENASE . JRNL REF BIOCHEMISTRY V. 49 1616 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20078138 JRNL DOI 10.1021/BI9016186 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2137803.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 39110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1942 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3418 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 751 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : 5.74000 REMARK 3 B33 (A**2) : -3.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.140 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.830 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.830 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.650 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 50.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : IN5D.PAR REMARK 3 PARAMETER FILE 5 : FAD_XPLOR.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : IN5D.TOP REMARK 3 TOPOLOGY FILE 5 : FAD_XPLOR.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3II4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MULTILAYER REMARK 200 OPTICS : OSMIC MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2A8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MICROM LPD, 300 MICROM 3II, 600 REMARK 280 MICROM NADH, 100 MM TRIS PH 8.5, 10 MM NACL, 11% PEG 10000, 15% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 570 O HOH A 756 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 -61.17 -135.96 REMARK 500 CYS A 46 -75.15 -26.61 REMARK 500 ASN A 119 13.35 -141.25 REMARK 500 ALA A 179 38.56 -97.12 REMARK 500 ALA A 266 57.96 -147.98 REMARK 500 ASP A 295 5.13 -62.18 REMARK 500 GLN A 315 78.32 -68.87 REMARK 500 PHE A 350 36.91 -95.19 REMARK 500 ASN A 463 44.10 -94.76 REMARK 500 LYS B 35 -58.75 -135.66 REMARK 500 PHE B 62 19.83 -63.12 REMARK 500 THR B 63 -39.51 -133.28 REMARK 500 LYS B 251 114.73 -160.54 REMARK 500 ALA B 266 49.41 -151.90 REMARK 500 GLN B 315 71.20 -69.29 REMARK 500 PHE B 350 31.79 -95.69 REMARK 500 TRP B 429 46.09 -106.01 REMARK 500 ASP B 430 50.32 36.61 REMARK 500 ASN B 463 45.45 -85.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3II A 465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3II B 465 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A8X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS DBREF 3II4 A 1 464 UNP P66004 DLDH_MYCTU 1 464 DBREF 3II4 B 1 464 UNP P66004 DLDH_MYCTU 1 464 SEQADV 3II4 GLY A -1 UNP P66004 EXPRESSION TAG SEQADV 3II4 SER A 0 UNP P66004 EXPRESSION TAG SEQADV 3II4 GLY B -1 UNP P66004 EXPRESSION TAG SEQADV 3II4 SER B 0 UNP P66004 EXPRESSION TAG SEQRES 1 A 466 GLY SER MET THR HIS TYR ASP VAL VAL VAL LEU GLY ALA SEQRES 2 A 466 GLY PRO GLY GLY TYR VAL ALA ALA ILE ARG ALA ALA GLN SEQRES 3 A 466 LEU GLY LEU SER THR ALA ILE VAL GLU PRO LYS TYR TRP SEQRES 4 A 466 GLY GLY VAL CYS LEU ASN VAL GLY CYS ILE PRO SER LYS SEQRES 5 A 466 ALA LEU LEU ARG ASN ALA GLU LEU VAL HIS ILE PHE THR SEQRES 6 A 466 LYS ASP ALA LYS ALA PHE GLY ILE SER GLY GLU VAL THR SEQRES 7 A 466 PHE ASP TYR GLY ILE ALA TYR ASP ARG SER ARG LYS VAL SEQRES 8 A 466 ALA GLU GLY ARG VAL ALA GLY VAL HIS PHE LEU MET LYS SEQRES 9 A 466 LYS ASN LYS ILE THR GLU ILE HIS GLY TYR GLY THR PHE SEQRES 10 A 466 ALA ASP ALA ASN THR LEU LEU VAL ASP LEU ASN ASP GLY SEQRES 11 A 466 GLY THR GLU SER VAL THR PHE ASP ASN ALA ILE ILE ALA SEQRES 12 A 466 THR GLY SER SER THR ARG LEU VAL PRO GLY THR SER LEU SEQRES 13 A 466 SER ALA ASN VAL VAL THR TYR GLU GLU GLN ILE LEU SER SEQRES 14 A 466 ARG GLU LEU PRO LYS SER ILE ILE ILE ALA GLY ALA GLY SEQRES 15 A 466 ALA ILE GLY MET GLU PHE GLY TYR VAL LEU LYS ASN TYR SEQRES 16 A 466 GLY VAL ASP VAL THR ILE VAL GLU PHE LEU PRO ARG ALA SEQRES 17 A 466 LEU PRO ASN GLU ASP ALA ASP VAL SER LYS GLU ILE GLU SEQRES 18 A 466 LYS GLN PHE LYS LYS LEU GLY VAL THR ILE LEU THR ALA SEQRES 19 A 466 THR LYS VAL GLU SER ILE ALA ASP GLY GLY SER GLN VAL SEQRES 20 A 466 THR VAL THR VAL THR LYS ASP GLY VAL ALA GLN GLU LEU SEQRES 21 A 466 LYS ALA GLU LYS VAL LEU GLN ALA ILE GLY PHE ALA PRO SEQRES 22 A 466 ASN VAL GLU GLY TYR GLY LEU ASP LYS ALA GLY VAL ALA SEQRES 23 A 466 LEU THR ASP ARG LYS ALA ILE GLY VAL ASP ASP TYR MET SEQRES 24 A 466 ARG THR ASN VAL GLY HIS ILE TYR ALA ILE GLY ASP VAL SEQRES 25 A 466 ASN GLY LEU LEU GLN LEU ALA HIS VAL ALA GLU ALA GLN SEQRES 26 A 466 GLY VAL VAL ALA ALA GLU THR ILE ALA GLY ALA GLU THR SEQRES 27 A 466 LEU THR LEU GLY ASP HIS ARG MET LEU PRO ARG ALA THR SEQRES 28 A 466 PHE CYS GLN PRO ASN VAL ALA SER PHE GLY LEU THR GLU SEQRES 29 A 466 GLN GLN ALA ARG ASN GLU GLY TYR ASP VAL VAL VAL ALA SEQRES 30 A 466 LYS PHE PRO PHE THR ALA ASN ALA LYS ALA HIS GLY VAL SEQRES 31 A 466 GLY ASP PRO SER GLY PHE VAL LYS LEU VAL ALA ASP ALA SEQRES 32 A 466 LYS HIS GLY GLU LEU LEU GLY GLY HIS LEU VAL GLY HIS SEQRES 33 A 466 ASP VAL ALA GLU LEU LEU PRO GLU LEU THR LEU ALA GLN SEQRES 34 A 466 ARG TRP ASP LEU THR ALA SER GLU LEU ALA ARG ASN VAL SEQRES 35 A 466 HIS THR HIS PRO THR MET SER GLU ALA LEU GLN GLU CYS SEQRES 36 A 466 PHE HIS GLY LEU VAL GLY HIS MET ILE ASN PHE SEQRES 1 B 466 GLY SER MET THR HIS TYR ASP VAL VAL VAL LEU GLY ALA SEQRES 2 B 466 GLY PRO GLY GLY TYR VAL ALA ALA ILE ARG ALA ALA GLN SEQRES 3 B 466 LEU GLY LEU SER THR ALA ILE VAL GLU PRO LYS TYR TRP SEQRES 4 B 466 GLY GLY VAL CYS LEU ASN VAL GLY CYS ILE PRO SER LYS SEQRES 5 B 466 ALA LEU LEU ARG ASN ALA GLU LEU VAL HIS ILE PHE THR SEQRES 6 B 466 LYS ASP ALA LYS ALA PHE GLY ILE SER GLY GLU VAL THR SEQRES 7 B 466 PHE ASP TYR GLY ILE ALA TYR ASP ARG SER ARG LYS VAL SEQRES 8 B 466 ALA GLU GLY ARG VAL ALA GLY VAL HIS PHE LEU MET LYS SEQRES 9 B 466 LYS ASN LYS ILE THR GLU ILE HIS GLY TYR GLY THR PHE SEQRES 10 B 466 ALA ASP ALA ASN THR LEU LEU VAL ASP LEU ASN ASP GLY SEQRES 11 B 466 GLY THR GLU SER VAL THR PHE ASP ASN ALA ILE ILE ALA SEQRES 12 B 466 THR GLY SER SER THR ARG LEU VAL PRO GLY THR SER LEU SEQRES 13 B 466 SER ALA ASN VAL VAL THR TYR GLU GLU GLN ILE LEU SER SEQRES 14 B 466 ARG GLU LEU PRO LYS SER ILE ILE ILE ALA GLY ALA GLY SEQRES 15 B 466 ALA ILE GLY MET GLU PHE GLY TYR VAL LEU LYS ASN TYR SEQRES 16 B 466 GLY VAL ASP VAL THR ILE VAL GLU PHE LEU PRO ARG ALA SEQRES 17 B 466 LEU PRO ASN GLU ASP ALA ASP VAL SER LYS GLU ILE GLU SEQRES 18 B 466 LYS GLN PHE LYS LYS LEU GLY VAL THR ILE LEU THR ALA SEQRES 19 B 466 THR LYS VAL GLU SER ILE ALA ASP GLY GLY SER GLN VAL SEQRES 20 B 466 THR VAL THR VAL THR LYS ASP GLY VAL ALA GLN GLU LEU SEQRES 21 B 466 LYS ALA GLU LYS VAL LEU GLN ALA ILE GLY PHE ALA PRO SEQRES 22 B 466 ASN VAL GLU GLY TYR GLY LEU ASP LYS ALA GLY VAL ALA SEQRES 23 B 466 LEU THR ASP ARG LYS ALA ILE GLY VAL ASP ASP TYR MET SEQRES 24 B 466 ARG THR ASN VAL GLY HIS ILE TYR ALA ILE GLY ASP VAL SEQRES 25 B 466 ASN GLY LEU LEU GLN LEU ALA HIS VAL ALA GLU ALA GLN SEQRES 26 B 466 GLY VAL VAL ALA ALA GLU THR ILE ALA GLY ALA GLU THR SEQRES 27 B 466 LEU THR LEU GLY ASP HIS ARG MET LEU PRO ARG ALA THR SEQRES 28 B 466 PHE CYS GLN PRO ASN VAL ALA SER PHE GLY LEU THR GLU SEQRES 29 B 466 GLN GLN ALA ARG ASN GLU GLY TYR ASP VAL VAL VAL ALA SEQRES 30 B 466 LYS PHE PRO PHE THR ALA ASN ALA LYS ALA HIS GLY VAL SEQRES 31 B 466 GLY ASP PRO SER GLY PHE VAL LYS LEU VAL ALA ASP ALA SEQRES 32 B 466 LYS HIS GLY GLU LEU LEU GLY GLY HIS LEU VAL GLY HIS SEQRES 33 B 466 ASP VAL ALA GLU LEU LEU PRO GLU LEU THR LEU ALA GLN SEQRES 34 B 466 ARG TRP ASP LEU THR ALA SER GLU LEU ALA ARG ASN VAL SEQRES 35 B 466 HIS THR HIS PRO THR MET SER GLU ALA LEU GLN GLU CYS SEQRES 36 B 466 PHE HIS GLY LEU VAL GLY HIS MET ILE ASN PHE HET FAD A 480 53 HET 3II A 465 43 HET FAD B 580 53 HET 3II B 465 43 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 3II N-[2-(2,4-DICHLOROPHENYL)ETHYL]-2-{8-[(2,4- HETNAM 2 3II DIMETHOXYPHENYL)CARBONYL]-4-OXO-1-PHENYL-1,3,8- HETNAM 3 3II TRIAZASPIRO[4.5]DEC-3-YL}ACETAMIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 3II 2(C32 H34 CL2 N4 O5) FORMUL 7 HOH *751(H2 O) HELIX 1 1 GLY A 12 LEU A 25 1 14 HELIX 2 2 GLY A 38 GLY A 45 1 8 HELIX 3 3 GLY A 45 ALA A 66 1 22 HELIX 4 4 LYS A 67 PHE A 69 5 3 HELIX 5 5 ASP A 78 ASN A 104 1 27 HELIX 6 6 THR A 160 LEU A 166 1 7 HELIX 7 7 GLY A 180 TYR A 193 1 14 HELIX 8 8 ASP A 211 GLY A 226 1 16 HELIX 9 9 GLY A 277 GLY A 282 1 6 HELIX 10 10 GLY A 308 GLY A 312 5 5 HELIX 11 11 LEU A 316 GLY A 333 1 18 HELIX 12 12 ASP A 341 LEU A 345 5 5 HELIX 13 13 THR A 361 GLY A 369 1 9 HELIX 14 14 ASN A 382 GLY A 389 1 8 HELIX 15 15 ASP A 415 LEU A 419 5 5 HELIX 16 16 LEU A 420 TRP A 429 1 10 HELIX 17 17 THR A 432 ALA A 437 1 6 HELIX 18 18 SER A 447 GLY A 459 1 13 HELIX 19 19 GLY B 12 LEU B 25 1 14 HELIX 20 20 GLY B 38 GLY B 45 1 8 HELIX 21 21 GLY B 45 ASP B 65 1 21 HELIX 22 22 ASP B 78 ASN B 104 1 27 HELIX 23 23 THR B 160 LEU B 166 1 7 HELIX 24 24 GLY B 180 TYR B 193 1 14 HELIX 25 25 ASP B 211 GLY B 226 1 16 HELIX 26 26 GLY B 277 GLY B 282 1 6 HELIX 27 27 GLY B 308 GLY B 312 5 5 HELIX 28 28 LEU B 316 GLY B 333 1 18 HELIX 29 29 ASP B 341 LEU B 345 5 5 HELIX 30 30 THR B 361 GLU B 368 1 8 HELIX 31 31 ASN B 382 GLY B 389 1 8 HELIX 32 32 ASP B 415 GLU B 418 5 4 HELIX 33 33 LEU B 419 TRP B 429 1 11 HELIX 34 34 THR B 432 ALA B 437 1 6 HELIX 35 35 SER B 447 GLY B 459 1 13 SHEET 1 A 6 THR A 107 ILE A 109 0 SHEET 2 A 6 THR A 29 VAL A 32 1 N ILE A 31 O THR A 107 SHEET 3 A 6 HIS A 3 LEU A 9 1 N VAL A 8 O ALA A 30 SHEET 4 A 6 THR A 130 ILE A 140 1 O ILE A 139 N LEU A 9 SHEET 5 A 6 THR A 120 LEU A 125 -1 N LEU A 121 O VAL A 133 SHEET 6 A 6 GLY A 111 PHE A 115 -1 N THR A 114 O LEU A 122 SHEET 1 B 5 THR A 107 ILE A 109 0 SHEET 2 B 5 THR A 29 VAL A 32 1 N ILE A 31 O THR A 107 SHEET 3 B 5 HIS A 3 LEU A 9 1 N VAL A 8 O ALA A 30 SHEET 4 B 5 THR A 130 ILE A 140 1 O ILE A 139 N LEU A 9 SHEET 5 B 5 ILE A 304 ALA A 306 1 O TYR A 305 N ALA A 138 SHEET 1 C 2 ILE A 71 SER A 72 0 SHEET 2 C 2 THR B 76 PHE B 77 -1 O THR B 76 N SER A 72 SHEET 1 D 2 THR A 76 PHE A 77 0 SHEET 2 D 2 ILE B 71 SER B 72 -1 O SER B 72 N THR A 76 SHEET 1 E 2 SER A 144 THR A 146 0 SHEET 2 E 2 PHE A 269 PRO A 271 -1 O ALA A 270 N SER A 145 SHEET 1 F 5 VAL A 158 VAL A 159 0 SHEET 2 F 5 LYS A 262 GLN A 265 1 O GLN A 265 N VAL A 159 SHEET 3 F 5 SER A 173 ALA A 177 1 N ALA A 177 O LEU A 264 SHEET 4 F 5 ASP A 196 VAL A 200 1 O VAL A 200 N ILE A 176 SHEET 5 F 5 THR A 228 LEU A 230 1 O LEU A 230 N ILE A 199 SHEET 1 G 3 THR A 233 ASP A 240 0 SHEET 2 G 3 VAL A 245 LYS A 251 -1 O THR A 246 N ALA A 239 SHEET 3 G 3 VAL A 254 ALA A 260 -1 O ALA A 260 N VAL A 245 SHEET 1 H 5 ARG A 347 THR A 349 0 SHEET 2 H 5 ASN A 354 GLY A 359 -1 O SER A 357 N ARG A 347 SHEET 3 H 5 GLU A 405 GLY A 413 -1 O LEU A 411 N ALA A 356 SHEET 4 H 5 PHE A 394 ASP A 400 -1 N VAL A 398 O LEU A 407 SHEET 5 H 5 VAL A 372 PRO A 378 -1 N VAL A 373 O ALA A 399 SHEET 1 I 6 THR B 107 ILE B 109 0 SHEET 2 I 6 THR B 29 VAL B 32 1 N ILE B 31 O ILE B 109 SHEET 3 I 6 THR B 2 LEU B 9 1 N VAL B 8 O VAL B 32 SHEET 4 I 6 GLU B 131 ILE B 140 1 O ILE B 139 N LEU B 9 SHEET 5 I 6 THR B 120 LEU B 125 -1 N LEU B 121 O VAL B 133 SHEET 6 I 6 GLY B 111 PHE B 115 -1 N THR B 114 O LEU B 122 SHEET 1 J 5 THR B 107 ILE B 109 0 SHEET 2 J 5 THR B 29 VAL B 32 1 N ILE B 31 O ILE B 109 SHEET 3 J 5 THR B 2 LEU B 9 1 N VAL B 8 O VAL B 32 SHEET 4 J 5 GLU B 131 ILE B 140 1 O ILE B 139 N LEU B 9 SHEET 5 J 5 ILE B 304 ALA B 306 1 O TYR B 305 N ILE B 140 SHEET 1 K 2 SER B 144 THR B 146 0 SHEET 2 K 2 PHE B 269 PRO B 271 -1 O ALA B 270 N SER B 145 SHEET 1 L 5 VAL B 158 VAL B 159 0 SHEET 2 L 5 LYS B 262 GLN B 265 1 O GLN B 265 N VAL B 159 SHEET 3 L 5 SER B 173 ALA B 177 1 N ALA B 177 O LEU B 264 SHEET 4 L 5 ASP B 196 GLU B 201 1 O THR B 198 N ILE B 176 SHEET 5 L 5 THR B 228 THR B 231 1 O THR B 228 N ILE B 199 SHEET 1 M 3 LYS B 234 ASP B 240 0 SHEET 2 M 3 VAL B 245 LYS B 251 -1 O THR B 246 N ALA B 239 SHEET 3 M 3 VAL B 254 ALA B 260 -1 O LEU B 258 N VAL B 247 SHEET 1 N 5 ARG B 347 THR B 349 0 SHEET 2 N 5 ASN B 354 GLY B 359 -1 O VAL B 355 N THR B 349 SHEET 3 N 5 GLU B 405 GLY B 413 -1 O LEU B 411 N ALA B 356 SHEET 4 N 5 PHE B 394 ASP B 400 -1 N VAL B 398 O GLY B 408 SHEET 5 N 5 VAL B 372 PRO B 378 -1 N VAL B 373 O ALA B 399 SSBOND 1 CYS A 41 CYS A 46 1555 1555 2.04 SSBOND 2 CYS B 41 CYS B 46 1555 1555 2.04 CISPEP 1 GLN A 352 PRO A 353 0 0.06 CISPEP 2 HIS A 443 PRO A 444 0 -0.28 CISPEP 3 GLN B 352 PRO B 353 0 0.01 CISPEP 4 HIS B 443 PRO B 444 0 -0.50 SITE 1 AC1 37 LEU A 9 GLY A 10 GLY A 12 PRO A 13 SITE 2 AC1 37 GLY A 14 VAL A 32 GLU A 33 PRO A 34 SITE 3 AC1 37 TYR A 36 GLY A 39 VAL A 40 CYS A 41 SITE 4 AC1 37 CYS A 46 LYS A 50 TYR A 112 GLY A 113 SITE 5 AC1 37 ALA A 141 THR A 142 GLY A 143 TYR A 161 SITE 6 AC1 37 TYR A 276 GLY A 308 ASP A 309 GLN A 315 SITE 7 AC1 37 LEU A 316 ALA A 317 HIS A 318 ALA A 320 SITE 8 AC1 37 3II A 465 HOH A 467 HOH A 468 HOH A 488 SITE 9 AC1 37 HOH A 496 HOH A 563 HOH A 838 HIS B 443 SITE 10 AC1 37 PRO B 444 SITE 1 AC2 20 LYS A 50 ARG A 147 ALA A 181 ILE A 182 SITE 2 AC2 20 GLU A 185 ASN A 209 GLU A 210 PHE A 269 SITE 3 AC2 20 ARG A 288 ALA A 290 GLY A 312 LEU A 313 SITE 4 AC2 20 LEU A 314 GLN A 315 LEU A 316 ARG A 347 SITE 5 AC2 20 ALA A 348 PHE A 350 FAD A 480 HOH A 573 SITE 1 AC3 37 HIS A 443 PRO A 444 LEU B 9 GLY B 10 SITE 2 AC3 37 GLY B 12 PRO B 13 GLY B 14 VAL B 32 SITE 3 AC3 37 GLU B 33 PRO B 34 TYR B 36 GLY B 39 SITE 4 AC3 37 VAL B 40 CYS B 41 CYS B 46 LYS B 50 SITE 5 AC3 37 TYR B 112 GLY B 113 ALA B 141 THR B 142 SITE 6 AC3 37 GLY B 143 TYR B 161 ILE B 182 TYR B 276 SITE 7 AC3 37 GLY B 308 ASP B 309 GLN B 315 LEU B 316 SITE 8 AC3 37 ALA B 317 HIS B 318 3II B 465 HOH B 470 SITE 9 AC3 37 HOH B 480 HOH B 481 HOH B 484 HOH B 575 SITE 10 AC3 37 HOH B 822 SITE 1 AC4 18 LYS B 50 ALA B 181 ILE B 182 GLU B 185 SITE 2 AC4 18 ASN B 209 GLU B 210 PRO B 271 ARG B 288 SITE 3 AC4 18 GLY B 312 LEU B 313 LEU B 314 GLN B 315 SITE 4 AC4 18 LEU B 316 ARG B 347 ALA B 348 PHE B 350 SITE 5 AC4 18 FAD B 580 HOH B 820 CRYST1 83.900 98.400 123.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008078 0.00000