HEADER PROTEIN BINDING 31-JUL-09 3II7 TITLE CRYSTAL STRUCTURE OF THE KELCH DOMAIN OF HUMAN KLHL7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KELCH-REPEAT DOMAIN, UNP RESIDUES 283-586; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLHL7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PROTEIN-BINDING, KELCH-REPEAT, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, KELCH REPEAT, NUCLEUS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,C.THANGARATNARAJAH,C.D.O.COOPER,E.UGOCHUKWU,J.R.C.MUNIZ, AUTHOR 2 T.KROJER,R.SETHI,A.C.W.PIKE,P.FILIPPAKOPOULOS,F.VON DELFT, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP,A.BULLOCK, AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3II7 1 REMARK SEQADV REVDAT 3 18-JUN-14 3II7 1 JRNL REVDAT 2 13-JUL-11 3II7 1 VERSN REVDAT 1 25-AUG-09 3II7 0 JRNL AUTH P.CANNING,C.D.COOPER,T.KROJER,J.W.MURRAY,A.C.PIKE, JRNL AUTH 2 A.CHAIKUAD,T.KEATES,C.THANGARATNARAJAH,V.HOJZAN, JRNL AUTH 3 V.AYINAMPUDI,B.D.MARSDEN,O.GILEADI,S.KNAPP,F.VON DELFT, JRNL AUTH 4 A.N.BULLOCK JRNL TITL STRUCTURAL BASIS FOR CUL3 PROTEIN ASSEMBLY WITH THE JRNL TITL 2 BTB-KELCH FAMILY OF E3 UBIQUITIN LIGASES. JRNL REF J.BIOL.CHEM. V. 288 7803 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23349464 JRNL DOI 10.1074/JBC.M112.437996 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.4050 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.177 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2458 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1731 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3310 ; 1.336 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4198 ; 0.838 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;30.736 ;23.689 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;11.081 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2711 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1474 ; 2.174 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 607 ; 0.542 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2393 ; 3.472 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 984 ; 5.377 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 904 ; 6.940 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2410 18.2720 24.8130 REMARK 3 T TENSOR REMARK 3 T11: 0.0348 T22: 0.0928 REMARK 3 T33: 0.0566 T12: -0.0165 REMARK 3 T13: -0.0063 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6573 L22: 0.7209 REMARK 3 L33: 2.8250 L12: 0.4863 REMARK 3 L13: -0.6841 L23: -0.3924 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.1057 S13: 0.0568 REMARK 3 S21: 0.0146 S22: 0.0209 S23: -0.0526 REMARK 3 S31: -0.0329 S32: 0.1944 S33: -0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 324 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6200 16.0930 30.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0632 REMARK 3 T33: 0.0222 T12: -0.0037 REMARK 3 T13: 0.0025 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.2404 L22: 0.8920 REMARK 3 L33: 1.0619 L12: 0.5700 REMARK 3 L13: 0.5234 L23: 0.3821 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.1398 S13: 0.0233 REMARK 3 S21: 0.0432 S22: -0.1013 S23: 0.0205 REMARK 3 S31: 0.0146 S32: -0.0415 S33: 0.0411 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 384 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6610 14.4190 23.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0620 REMARK 3 T33: 0.0522 T12: -0.0011 REMARK 3 T13: 0.0074 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.3744 L22: 0.5882 REMARK 3 L33: 1.0831 L12: 0.1001 REMARK 3 L13: 0.2019 L23: 0.1768 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.1521 S13: 0.0541 REMARK 3 S21: 0.0679 S22: -0.0224 S23: 0.0808 REMARK 3 S31: 0.0399 S32: -0.1101 S33: 0.0255 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 426 A 446 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1900 9.9180 13.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0544 REMARK 3 T33: 0.0505 T12: -0.0173 REMARK 3 T13: -0.0166 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.3644 L22: 1.1587 REMARK 3 L33: 0.3310 L12: 0.5967 REMARK 3 L13: -0.4765 L23: -0.0996 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0263 S13: -0.0832 REMARK 3 S21: 0.0221 S22: -0.0800 S23: -0.0784 REMARK 3 S31: -0.0065 S32: -0.0550 S33: 0.0576 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 447 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2910 12.4410 7.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0404 REMARK 3 T33: 0.0398 T12: 0.0004 REMARK 3 T13: -0.0027 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5611 L22: 0.3877 REMARK 3 L33: 0.2264 L12: -0.0125 REMARK 3 L13: -0.0210 L23: 0.0771 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.0409 S13: -0.0140 REMARK 3 S21: -0.0568 S22: -0.0052 S23: -0.0133 REMARK 3 S31: -0.0018 S32: 0.0011 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 559 A 577 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7390 14.5120 20.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0691 REMARK 3 T33: 0.0334 T12: -0.0013 REMARK 3 T13: -0.0269 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.0493 L22: 1.8485 REMARK 3 L33: 1.1526 L12: -0.3991 REMARK 3 L13: -0.9716 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.0923 S13: 0.0696 REMARK 3 S21: 0.1105 S22: 0.0654 S23: -0.0991 REMARK 3 S31: -0.0090 S32: 0.0755 S33: -0.0249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3II7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : FLAT GRAPHITE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 28.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VPJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20000, 0.1M MES PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.21750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.45250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.21750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.45250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 281 REMARK 465 MET A 282 REMARK 465 GLY A 283 REMARK 465 THR A 284 REMARK 465 ARG A 285 REMARK 465 PRO A 286 REMARK 465 ARG A 287 REMARK 465 ARG A 288 REMARK 465 LYS A 289 REMARK 465 GLY A 578 REMARK 465 ALA A 579 REMARK 465 ASN A 580 REMARK 465 GLU A 581 REMARK 465 GLU A 582 REMARK 465 THR A 583 REMARK 465 LEU A 584 REMARK 465 GLU A 585 REMARK 465 THR A 586 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 554 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 930 O HOH A 931 1.96 REMARK 500 O HOH A 929 O HOH A 931 2.05 REMARK 500 O HOH A 678 O HOH A 919 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 482 O1 EDO A 971 4555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 292 88.10 -152.49 REMARK 500 GLN A 345 -109.28 -124.33 REMARK 500 LYS A 480 -78.00 71.91 REMARK 500 ASP A 481 19.48 -147.23 REMARK 500 VAL A 511 -167.26 -121.12 REMARK 500 VAL A 539 -63.07 -108.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 951 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 952 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 953 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 954 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 955 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 956 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 957 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 958 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 959 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 960 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 961 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 962 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 963 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 964 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 966 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 967 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 965 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 968 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 969 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 970 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 971 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 972 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 973 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 975 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 974 DBREF 3II7 A 283 586 UNP Q8IXQ5 KLHL7_HUMAN 283 586 SEQADV 3II7 SER A 281 UNP Q8IXQ5 EXPRESSION TAG SEQADV 3II7 MET A 282 UNP Q8IXQ5 EXPRESSION TAG SEQRES 1 A 306 SER MET GLY THR ARG PRO ARG ARG LYS LYS HIS ASP TYR SEQRES 2 A 306 ARG ILE ALA LEU PHE GLY GLY SER GLN PRO GLN SER CYS SEQRES 3 A 306 ARG TYR PHE ASN PRO LYS ASP TYR SER TRP THR ASP ILE SEQRES 4 A 306 ARG CYS PRO PHE GLU LYS ARG ARG ASP ALA ALA CYS VAL SEQRES 5 A 306 PHE TRP ASP ASN VAL VAL TYR ILE LEU GLY GLY SER GLN SEQRES 6 A 306 LEU PHE PRO ILE LYS ARG MET ASP CYS TYR ASN VAL VAL SEQRES 7 A 306 LYS ASP SER TRP TYR SER LYS LEU GLY PRO PRO THR PRO SEQRES 8 A 306 ARG ASP SER LEU ALA ALA CYS ALA ALA GLU GLY LYS ILE SEQRES 9 A 306 TYR THR SER GLY GLY SER GLU VAL GLY ASN SER ALA LEU SEQRES 10 A 306 TYR LEU PHE GLU CYS TYR ASP THR ARG THR GLU SER TRP SEQRES 11 A 306 HIS THR LYS PRO SER MET LEU THR GLN ARG CYS SER HIS SEQRES 12 A 306 GLY MET VAL GLU ALA ASN GLY LEU ILE TYR VAL CYS GLY SEQRES 13 A 306 GLY SER LEU GLY ASN ASN VAL SER GLY ARG VAL LEU ASN SEQRES 14 A 306 SER CYS GLU VAL TYR ASP PRO ALA THR GLU THR TRP THR SEQRES 15 A 306 GLU LEU CYS PRO MET ILE GLU ALA ARG LYS ASN HIS GLY SEQRES 16 A 306 LEU VAL PHE VAL LYS ASP LYS ILE PHE ALA VAL GLY GLY SEQRES 17 A 306 GLN ASN GLY LEU GLY GLY LEU ASP ASN VAL GLU TYR TYR SEQRES 18 A 306 ASP ILE LYS LEU ASN GLU TRP LYS MET VAL SER PRO MET SEQRES 19 A 306 PRO TRP LYS GLY VAL THR VAL LYS CYS ALA ALA VAL GLY SEQRES 20 A 306 SER ILE VAL TYR VAL LEU ALA GLY PHE GLN GLY VAL GLY SEQRES 21 A 306 ARG LEU GLY HIS ILE LEU GLU TYR ASN THR GLU THR ASP SEQRES 22 A 306 LYS TRP VAL ALA ASN SER LYS VAL ARG ALA PHE PRO VAL SEQRES 23 A 306 THR SER CYS LEU ILE CYS VAL VAL ASP THR CYS GLY ALA SEQRES 24 A 306 ASN GLU GLU THR LEU GLU THR HET EDO A 951 4 HET EDO A 952 4 HET EDO A 953 4 HET EDO A 954 4 HET EDO A 955 4 HET EDO A 956 4 HET EDO A 957 4 HET EDO A 958 4 HET EDO A 959 4 HET EDO A 960 4 HET EDO A 961 4 HET EDO A 962 4 HET EDO A 963 4 HET EDO A 964 4 HET EDO A 966 4 HET EDO A 967 4 HET EDO A 965 4 HET EDO A 968 4 HET EDO A 969 4 HET EDO A 970 4 HET EDO A 971 4 HET EDO A 972 4 HET EDO A 973 4 HET EDO A 975 4 HET EDO A 974 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 25(C2 H6 O2) FORMUL 27 HOH *338(H2 O) SHEET 1 A 4 TRP A 316 ASP A 318 0 SHEET 2 A 4 CYS A 306 PHE A 309 -1 N TYR A 308 O THR A 317 SHEET 3 A 4 TYR A 293 PHE A 298 -1 N ILE A 295 O PHE A 309 SHEET 4 A 4 LEU A 570 ASP A 575 -1 O VAL A 574 N ARG A 294 SHEET 1 B 4 ALA A 330 TRP A 334 0 SHEET 2 B 4 VAL A 337 LEU A 341 -1 O TYR A 339 N VAL A 332 SHEET 3 B 4 ARG A 351 ASN A 356 -1 O ASP A 353 N ILE A 340 SHEET 4 B 4 SER A 361 LEU A 366 -1 O TYR A 363 N CYS A 354 SHEET 1 C 4 ALA A 376 ALA A 380 0 SHEET 2 C 4 LYS A 383 SER A 387 -1 O TYR A 385 N CYS A 378 SHEET 3 C 4 PHE A 400 ASP A 404 -1 O TYR A 403 N ILE A 384 SHEET 4 C 4 SER A 409 LYS A 413 -1 O HIS A 411 N CYS A 402 SHEET 1 D 4 GLY A 424 ALA A 428 0 SHEET 2 D 4 LEU A 431 CYS A 435 -1 O TYR A 433 N VAL A 426 SHEET 3 D 4 CYS A 451 ASP A 455 -1 O GLU A 452 N VAL A 434 SHEET 4 D 4 THR A 460 LEU A 464 -1 O LEU A 464 N CYS A 451 SHEET 1 E 2 SER A 438 LEU A 439 0 SHEET 2 E 2 ARG A 446 VAL A 447 -1 O ARG A 446 N LEU A 439 SHEET 1 F 4 GLY A 475 VAL A 479 0 SHEET 2 F 4 LYS A 482 VAL A 486 -1 O PHE A 484 N VAL A 477 SHEET 3 F 4 VAL A 498 ASP A 502 -1 O GLU A 499 N ALA A 485 SHEET 4 F 4 GLU A 507 MET A 510 -1 O GLU A 507 N ASP A 502 SHEET 1 G 2 GLN A 489 ASN A 490 0 SHEET 2 G 2 GLY A 493 GLY A 494 -1 O GLY A 493 N ASN A 490 SHEET 1 H 4 LYS A 522 VAL A 526 0 SHEET 2 H 4 ILE A 529 ALA A 534 -1 O TYR A 531 N ALA A 524 SHEET 3 H 4 HIS A 544 ASN A 549 -1 O TYR A 548 N VAL A 530 SHEET 4 H 4 LYS A 554 ARG A 562 -1 O ASN A 558 N ILE A 545 SITE 1 AC1 10 GLY A 300 SER A 301 GLN A 302 SER A 305 SITE 2 AC1 10 CYS A 306 ILE A 319 ARG A 320 CYS A 321 SITE 3 AC1 10 HOH A 939 EDO A 953 SITE 1 AC2 7 ARG A 320 ASP A 360 TRP A 362 HOH A 616 SITE 2 AC2 7 HOH A 617 HOH A 678 EDO A 965 SITE 1 AC3 4 PRO A 303 GLN A 304 ASP A 318 EDO A 951 SITE 1 AC4 5 ARG A 307 TRP A 316 ALA A 563 PHE A 564 SITE 2 AC4 5 EDO A 975 SITE 1 AC5 8 VAL A 426 VAL A 477 PHE A 478 ALA A 524 SITE 2 AC5 8 ALA A 525 HOH A 758 HOH A 775 HOH A 929 SITE 1 AC6 6 PHE A 298 LYS A 325 ARG A 326 HOH A 625 SITE 2 AC6 6 HOH A 823 EDO A 957 SITE 1 AC7 11 ARG A 326 ARG A 327 ASP A 328 ALA A 329 SITE 2 AC7 11 LYS A 522 SER A 568 CYS A 569 LEU A 570 SITE 3 AC7 11 HOH A 760 HOH A 868 EDO A 956 SITE 1 AC8 8 THR A 520 LYS A 522 PHE A 536 THR A 567 SITE 2 AC8 8 SER A 568 HOH A 746 HOH A 860 HOH A 924 SITE 1 AC9 6 LEU A 505 TRP A 516 LYS A 517 GLN A 537 SITE 2 AC9 6 HOH A 844 HOH A 849 SITE 1 BC1 3 GLY A 494 VAL A 519 GLN A 537 SITE 1 BC2 6 ARG A 446 VAL A 447 ASN A 490 GLY A 491 SITE 2 BC2 6 HOH A 741 HOH A 865 SITE 1 BC3 5 GLY A 300 SER A 301 GLN A 302 GLU A 324 SITE 2 BC3 5 LYS A 325 SITE 1 BC4 6 PRO A 565 VAL A 566 THR A 567 SER A 568 SITE 2 BC4 6 HOH A 806 HOH A 922 SITE 1 BC5 4 PRO A 322 ILE A 349 LYS A 350 EDO A 966 SITE 1 BC6 7 GLU A 324 GLN A 345 LEU A 346 PHE A 347 SITE 2 BC6 7 PRO A 348 HOH A 889 EDO A 964 SITE 1 BC7 6 LEU A 397 TYR A 398 LEU A 399 SER A 415 SITE 2 BC7 6 HOH A 704 EDO A 973 SITE 1 BC8 3 LYS A 365 LEU A 366 EDO A 952 SITE 1 BC9 6 GLU A 381 ASP A 455 HIS A 544 ARG A 562 SITE 2 BC9 6 HOH A 799 HOH A 894 SITE 1 CC1 5 LYS A 290 TYR A 398 SER A 415 MET A 416 SITE 2 CC1 5 LEU A 417 SITE 1 CC2 8 ASP A 496 LYS A 504 PRO A 513 HOH A 645 SITE 2 CC2 8 HOH A 705 HOH A 716 HOH A 764 HOH A 909 SITE 1 CC3 7 LYS A 480 LYS A 482 LEU A 492 THR A 550 SITE 2 CC3 7 GLU A 551 HOH A 640 HOH A 659 SITE 1 CC4 6 GLU A 547 ASN A 549 LYS A 554 VAL A 556 SITE 2 CC4 6 HOH A 665 HOH A 717 SITE 1 CC5 8 ASP A 292 ARG A 294 ASN A 394 ALA A 396 SITE 2 CC5 8 TYR A 398 GLN A 419 HOH A 691 EDO A 967 SITE 1 CC6 6 TRP A 316 VAL A 561 ARG A 562 HOH A 620 SITE 2 CC6 6 HOH A 646 EDO A 954 SITE 1 CC7 4 PRO A 515 VAL A 556 ALA A 557 HOH A 881 CRYST1 76.435 50.905 87.500 90.00 113.19 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013083 0.000000 0.005606 0.00000 SCALE2 0.000000 0.019644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012434 0.00000