HEADER GENE REGULATION 31-JUL-09 3IID TITLE CRYSTAL STRUCTURE OF THE MACRO DOMAIN OF HUMAN HISTONE MACROH2A1.1 IN TITLE 2 COMPLEX WITH ADP-RIBOSE (FORM A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORE HISTONE MACRO-H2A.1, ISOFORM 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MACRO DOMAIN: UNP RESIDUES 162-369; COMPND 5 SYNONYM: HISTONE MACROH2A1, MH2A1, H2A.Y, H2A/Y, MEDULLOBLASTOMA COMPND 6 ANTIGEN MU-MB-50.205; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H2AFY, MACROH2A1, MACROH2A1.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS HISTONE, CHROMATIN, MACRO DOMAIN, CHROMATIN REGULATOR, CHROMOSOMAL KEYWDS 2 PROTEIN, DNA-BINDING, ISOPEPTIDE BOND, METHYLATION, NUCLEOSOME CORE, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.HOTHORN,M.BORTFELD,A.G.LADURNER,K.SCHEFFZEK REVDAT 4 06-SEP-23 3IID 1 REMARK SEQADV REVDAT 3 13-JUL-11 3IID 1 VERSN REVDAT 2 15-SEP-09 3IID 1 JRNL REVDAT 1 18-AUG-09 3IID 0 JRNL AUTH G.TIMINSZKY,S.TILL,P.O.HASSA,M.HOTHORN,G.KUSTATSCHER, JRNL AUTH 2 B.NIJMEIJER,J.COLOMBELLI,M.ALTMEYER,E.H.STELZER,K.SCHEFFZEK, JRNL AUTH 3 M.O.HOTTIGER,A.G.LADURNER JRNL TITL A MACRODOMAIN-CONTAINING HISTONE REARRANGES CHROMATIN UPON JRNL TITL 2 SENSING PARP1 ACTIVATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 923 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19680243 JRNL DOI 10.1038/NSMB.1664 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 2.70000 REMARK 3 B12 (A**2) : -0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.801 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1459 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 956 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1984 ; 1.680 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2367 ; 1.002 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 9.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;32.983 ;25.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;14.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;22.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1607 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 284 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 912 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 715 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 709 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 61 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1199 ; 0.839 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 384 ; 0.189 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1482 ; 1.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 620 ; 2.038 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 500 ; 2.878 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0341 -22.7106 -0.2731 REMARK 3 T TENSOR REMARK 3 T11: -0.1970 T22: -0.1705 REMARK 3 T33: -0.1100 T12: 0.0000 REMARK 3 T13: -0.0297 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 7.4938 L22: 23.2825 REMARK 3 L33: 10.6998 L12: 4.5067 REMARK 3 L13: 5.9173 L23: 13.3809 REMARK 3 S TENSOR REMARK 3 S11: 0.2453 S12: -0.0624 S13: -0.0986 REMARK 3 S21: 0.1193 S22: 0.3380 S23: -0.3720 REMARK 3 S31: 0.1120 S32: -0.0021 S33: -0.5833 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4420 -26.9939 -4.2744 REMARK 3 T TENSOR REMARK 3 T11: -0.0656 T22: -0.2193 REMARK 3 T33: -0.1787 T12: 0.0720 REMARK 3 T13: -0.0921 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 5.3365 L22: 2.4136 REMARK 3 L33: 3.1895 L12: 1.2432 REMARK 3 L13: 1.0123 L23: 1.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.2535 S12: 0.4375 S13: -0.4583 REMARK 3 S21: -0.3438 S22: 0.0086 S23: 0.0844 REMARK 3 S31: 0.2645 S32: 0.0920 S33: -0.2621 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7459 -31.4388 -10.3548 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1706 REMARK 3 T33: 0.1610 T12: 0.2226 REMARK 3 T13: -0.0293 T23: -0.2405 REMARK 3 L TENSOR REMARK 3 L11: 7.9101 L22: 4.3718 REMARK 3 L33: 2.7036 L12: 0.3271 REMARK 3 L13: -0.6609 L23: 1.0684 REMARK 3 S TENSOR REMARK 3 S11: 0.3267 S12: 0.9249 S13: -0.5665 REMARK 3 S21: -0.6319 S22: 0.1664 S23: -0.8988 REMARK 3 S31: 0.4224 S32: 0.8542 S33: -0.4931 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5448 -26.5414 2.4676 REMARK 3 T TENSOR REMARK 3 T11: -0.1139 T22: -0.1860 REMARK 3 T33: -0.0845 T12: 0.0928 REMARK 3 T13: -0.1187 T23: -0.0930 REMARK 3 L TENSOR REMARK 3 L11: 5.1233 L22: 4.2375 REMARK 3 L33: 2.0353 L12: -0.2843 REMARK 3 L13: 0.6889 L23: 0.3204 REMARK 3 S TENSOR REMARK 3 S11: 0.1393 S12: 0.0140 S13: -0.4257 REMARK 3 S21: 0.2254 S22: 0.0552 S23: -0.5364 REMARK 3 S31: 0.3004 S32: 0.3994 S33: -0.1944 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4662 -26.7141 3.8506 REMARK 3 T TENSOR REMARK 3 T11: -0.1389 T22: -0.2153 REMARK 3 T33: -0.1643 T12: 0.0535 REMARK 3 T13: -0.1094 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 4.8078 L22: 4.8106 REMARK 3 L33: 3.6311 L12: -1.0395 REMARK 3 L13: 1.3369 L23: -0.4351 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: -0.2092 S13: -0.4317 REMARK 3 S21: 0.2694 S22: 0.1183 S23: -0.0211 REMARK 3 S31: 0.2621 S32: -0.0364 S33: -0.2565 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0719 -20.0109 0.4109 REMARK 3 T TENSOR REMARK 3 T11: -0.1997 T22: -0.1678 REMARK 3 T33: -0.1569 T12: 0.0415 REMARK 3 T13: -0.0468 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 7.4598 L22: 12.9174 REMARK 3 L33: 4.5655 L12: -1.3257 REMARK 3 L13: -0.0167 L23: -0.7531 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: -0.1453 S13: 0.4289 REMARK 3 S21: 0.2705 S22: 0.0608 S23: 0.0107 REMARK 3 S31: -0.2463 S32: 0.0360 S33: -0.2109 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1286 -37.2212 3.8883 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.1404 REMARK 3 T33: 0.3115 T12: -0.0945 REMARK 3 T13: -0.2151 T23: 0.0839 REMARK 3 L TENSOR REMARK 3 L11: 20.4598 L22: 18.3343 REMARK 3 L33: 17.5016 L12: -6.6515 REMARK 3 L13: -13.9605 L23: -0.4156 REMARK 3 S TENSOR REMARK 3 S11: 0.2169 S12: -0.8666 S13: -1.6073 REMARK 3 S21: 0.8158 S22: -0.2886 S23: 1.4835 REMARK 3 S31: 0.3651 S32: -2.1010 S33: 0.0717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZR3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 1000, 0.2 M K2NO3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.02667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.52000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.53333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.50667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 159 REMARK 465 ALA A 160 REMARK 465 MET A 161 REMARK 465 GLN A 162 REMARK 465 GLY A 163 REMARK 465 GLU A 164 REMARK 465 VAL A 165 REMARK 465 SER A 166 REMARK 465 LYS A 167 REMARK 465 ALA A 168 REMARK 465 ALA A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 ASP A 172 REMARK 465 SER A 173 REMARK 465 THR A 174 REMARK 465 THR A 175 REMARK 465 GLU A 176 REMARK 465 GLY A 177 REMARK 465 THR A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 365 REMARK 465 LEU A 366 REMARK 465 ASP A 367 REMARK 465 ALA A 368 REMARK 465 ASN A 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 181 CG OD1 OD2 REMARK 470 SER A 337 OG REMARK 470 THR A 338 OG1 CG2 REMARK 470 SER A 340 OG REMARK 470 MET A 363 CG SD CE REMARK 470 ALA A 364 CB REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 232 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 217 -167.02 -128.52 REMARK 500 ALA A 255 -0.66 68.09 REMARK 500 SER A 337 -27.14 71.37 REMARK 500 MET A 339 -64.29 -101.46 REMARK 500 PHE A 351 -47.85 -130.59 REMARK 500 GLU A 362 -70.66 -88.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZR3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FREE MACRO DOMAIN OF HUMAN HISTONE REMARK 900 MACROH2A1.1 REMARK 900 RELATED ID: 2FXK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FREE MACRO DOMAIN OF HUMAN HISTONE REMARK 900 MACROH2A1.1 REMARK 900 RELATED ID: 3IIF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MACRO DOMAIN OF HUMAN HISTONE MACROH2A1.1 REMARK 900 IN COMPLEX WITH ADP-RIBOSE (FORM B) DBREF 3IID A 162 369 UNP O75367-2 H2AY_HUMAN 162 369 SEQADV 3IID GLY A 159 UNP O75367-2 EXPRESSION TAG SEQADV 3IID ALA A 160 UNP O75367-2 EXPRESSION TAG SEQADV 3IID MET A 161 UNP O75367-2 EXPRESSION TAG SEQRES 1 A 211 GLY ALA MET GLN GLY GLU VAL SER LYS ALA ALA SER ALA SEQRES 2 A 211 ASP SER THR THR GLU GLY THR PRO ALA ASP GLY PHE THR SEQRES 3 A 211 VAL LEU SER THR LYS SER LEU PHE LEU GLY GLN LYS LEU SEQRES 4 A 211 GLN VAL VAL GLN ALA ASP ILE ALA SER ILE ASP SER ASP SEQRES 5 A 211 ALA VAL VAL HIS PRO THR ASN THR ASP PHE TYR ILE GLY SEQRES 6 A 211 GLY GLU VAL GLY ASN THR LEU GLU LYS LYS GLY GLY LYS SEQRES 7 A 211 GLU PHE VAL GLU ALA VAL LEU GLU LEU ARG LYS LYS ASN SEQRES 8 A 211 GLY PRO LEU GLU VAL ALA GLY ALA ALA VAL SER ALA GLY SEQRES 9 A 211 HIS GLY LEU PRO ALA LYS PHE VAL ILE HIS CYS ASN SER SEQRES 10 A 211 PRO VAL TRP GLY ALA ASP LYS CYS GLU GLU LEU LEU GLU SEQRES 11 A 211 LYS THR VAL LYS ASN CYS LEU ALA LEU ALA ASP ASP LYS SEQRES 12 A 211 LYS LEU LYS SER ILE ALA PHE PRO SER ILE GLY SER GLY SEQRES 13 A 211 ARG ASN GLY PHE PRO LYS GLN THR ALA ALA GLN LEU ILE SEQRES 14 A 211 LEU LYS ALA ILE SER SER TYR PHE VAL SER THR MET SER SEQRES 15 A 211 SER SER ILE LYS THR VAL TYR PHE VAL LEU PHE ASP SER SEQRES 16 A 211 GLU SER ILE GLY ILE TYR VAL GLN GLU MET ALA LYS LEU SEQRES 17 A 211 ASP ALA ASN HET APR A 400 36 HET NO3 A 401 4 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM NO3 NITRATE ION FORMUL 2 APR C15 H23 N5 O14 P2 FORMUL 3 NO3 N O3 1- FORMUL 4 HOH *40(H2 O) HELIX 1 1 ILE A 204 ILE A 207 5 4 HELIX 2 2 GLY A 224 GLY A 250 1 27 HELIX 3 3 LYS A 282 LYS A 301 1 20 HELIX 4 4 PRO A 319 VAL A 336 1 18 HELIX 5 5 ASP A 352 MET A 363 1 12 SHEET 1 A 7 PHE A 183 SER A 190 0 SHEET 2 A 7 LYS A 196 ALA A 202 -1 O LEU A 197 N LYS A 189 SHEET 3 A 7 THR A 345 LEU A 350 1 O PHE A 348 N GLN A 198 SHEET 4 A 7 SER A 305 PHE A 308 1 N PHE A 308 O VAL A 349 SHEET 5 A 7 ALA A 211 THR A 216 1 N ALA A 211 O ALA A 307 SHEET 6 A 7 PHE A 269 ASN A 274 1 O ILE A 271 N HIS A 214 SHEET 7 A 7 ALA A 257 ALA A 261 -1 N ALA A 258 O HIS A 272 CISPEP 1 ALA A 180 ASP A 181 0 14.36 SITE 1 AC1 24 ASP A 203 ILE A 204 PRO A 215 THR A 216 SITE 2 AC1 24 ASN A 217 TYR A 221 GLY A 223 GLY A 224 SITE 3 AC1 24 GLU A 225 VAL A 226 THR A 229 LYS A 236 SITE 4 AC1 24 SER A 275 SER A 310 GLY A 312 SER A 313 SITE 5 AC1 24 GLY A 314 ARG A 315 ASN A 316 PHE A 351 SITE 6 AC1 24 ASP A 352 HOH A 506 HOH A 510 HOH A 534 SITE 1 AC2 5 THR A 188 LYS A 189 LYS A 196 LYS A 292 SITE 2 AC2 5 TYR A 334 CRYST1 86.260 86.260 51.040 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011593 0.006693 0.000000 0.00000 SCALE2 0.000000 0.013386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019592 0.00000