HEADER PROTEIN BINDING, TRANSFERASE 02-AUG-09 3IIM TITLE THE STRUCTURE OF HCINAP-DADP COMPLEX AT 2.0 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COILIN-INTERACTING NUCLEAR ATPASE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COILIN-INTERACTING NULCEAR ATPASE PROTEIN, TAF9 RNA COMPND 5 POLYMERASE II, TATA BOX BINDING PROTEIN (TBP)-ASSOCIATED FACTOR, COMPND 6 32KDA, ISOFORM CRA_B, HUMAN ADENYLATE KINASE 6; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CINAP, TAF9, HCG_37060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3 KEYWDS ALPHA AND BETA PROTEINS (A/B), PROTEIN BINDING, TRANSFERASE, KEYWDS 2 PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.ZOGRAPHOS,C.E.DRAKOU,D.D.LEONIDAS REVDAT 5 06-SEP-23 3IIM 1 REMARK SEQADV REVDAT 4 18-JAN-12 3IIM 1 JRNL REVDAT 3 23-NOV-11 3IIM 1 JRNL REVDAT 2 05-OCT-11 3IIM 1 JRNL VERSN REMARK REVDAT 1 06-OCT-10 3IIM 0 JRNL AUTH C.E.DRAKOU,A.MALEKKOU,J.M.HAYES,C.W.LEDERER,D.D.LEONIDAS, JRNL AUTH 2 N.G.OIKONOMAKOS,A.I.LAMOND,N.SANTAMA,S.E.ZOGRAPHOS JRNL TITL HCINAP IS AN ATYPICAL MAMMALIAN NUCLEAR ADENYLATE KINASE JRNL TITL 2 WITH AN ATPASE MOTIF: STRUCTURAL AND FUNCTIONAL STUDIES. JRNL REF PROTEINS V. 80 206 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22038794 JRNL DOI 10.1002/PROT.23186 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1134 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1555 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2121 ; 1.160 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 4.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;37.388 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;12.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1174 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 880 ; 0.523 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1434 ; 1.010 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 675 ; 1.603 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 684 ; 2.679 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8458 -45.6953 10.0072 REMARK 3 T TENSOR REMARK 3 T11: 0.5866 T22: 0.1365 REMARK 3 T33: 0.6781 T12: 0.1269 REMARK 3 T13: -0.2707 T23: -0.0852 REMARK 3 L TENSOR REMARK 3 L11: 3.1972 L22: 6.4789 REMARK 3 L33: 6.2109 L12: -1.0956 REMARK 3 L13: -3.5037 L23: 2.7853 REMARK 3 S TENSOR REMARK 3 S11: -0.2363 S12: 0.0022 S13: -0.8925 REMARK 3 S21: -0.1358 S22: 0.2114 S23: -0.6745 REMARK 3 S31: 1.2673 S32: 0.2654 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8119 -29.3489 -1.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1367 REMARK 3 T33: 0.1275 T12: 0.0128 REMARK 3 T13: 0.0123 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.9485 L22: 1.0564 REMARK 3 L33: 1.0057 L12: -0.0407 REMARK 3 L13: 0.3924 L23: -0.3580 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0372 S13: 0.0097 REMARK 3 S21: -0.1131 S22: -0.0658 S23: -0.1041 REMARK 3 S31: -0.0137 S32: 0.0311 S33: 0.0421 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6623 -35.5832 -3.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.1388 T22: 0.1490 REMARK 3 T33: 0.1473 T12: 0.0354 REMARK 3 T13: 0.0449 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 4.4436 L22: 1.0184 REMARK 3 L33: 0.7995 L12: 1.2673 REMARK 3 L13: 1.0998 L23: -0.0585 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.0793 S13: -0.0705 REMARK 3 S21: -0.2121 S22: -0.0433 S23: -0.1943 REMARK 3 S31: 0.0364 S32: 0.1478 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4163 -43.0870 -10.9494 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1243 REMARK 3 T33: 0.1231 T12: 0.0353 REMARK 3 T13: -0.0272 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 9.9465 L22: 1.6158 REMARK 3 L33: 5.5656 L12: 0.5787 REMARK 3 L13: 0.0035 L23: 0.8686 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: 0.4136 S13: 0.3763 REMARK 3 S21: -0.1914 S22: 0.1296 S23: 0.1489 REMARK 3 S31: 0.0164 S32: 0.0486 S33: -0.0342 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -38.6471 -33.4272 -12.5799 REMARK 3 T TENSOR REMARK 3 T11: 0.4497 T22: 0.2056 REMARK 3 T33: 0.8946 T12: 0.1015 REMARK 3 T13: -0.2881 T23: 0.1664 REMARK 3 L TENSOR REMARK 3 L11: 7.5971 L22: 5.9521 REMARK 3 L33: 6.4494 L12: -3.2935 REMARK 3 L13: -5.4049 L23: 5.7744 REMARK 3 S TENSOR REMARK 3 S11: 0.4939 S12: 0.7426 S13: 2.0444 REMARK 3 S21: -1.4496 S22: -0.1004 S23: 0.3194 REMARK 3 S31: -1.2453 S32: -0.4819 S33: -0.3935 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2229 -45.6216 0.9804 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.0936 REMARK 3 T33: 0.1451 T12: -0.0205 REMARK 3 T13: -0.0007 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 6.1816 L22: 3.7229 REMARK 3 L33: 5.6908 L12: -0.6765 REMARK 3 L13: 3.4320 L23: 0.1784 REMARK 3 S TENSOR REMARK 3 S11: 0.2161 S12: -0.0754 S13: -0.5394 REMARK 3 S21: -0.0226 S22: -0.2139 S23: 0.0433 REMARK 3 S31: 0.3922 S32: -0.2567 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8607 -33.5197 3.6822 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1425 REMARK 3 T33: 0.1183 T12: 0.0103 REMARK 3 T13: 0.0016 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7642 L22: 1.2183 REMARK 3 L33: 0.7856 L12: 0.0445 REMARK 3 L13: 0.2367 L23: 0.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0561 S13: -0.0357 REMARK 3 S21: -0.0146 S22: -0.0400 S23: 0.0886 REMARK 3 S31: 0.0731 S32: -0.1179 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0791 -16.0065 -11.1694 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.1246 REMARK 3 T33: 0.1386 T12: 0.0275 REMARK 3 T13: 0.0219 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 3.5439 L22: 6.3477 REMARK 3 L33: 3.6348 L12: -1.4888 REMARK 3 L13: 2.4693 L23: 1.6197 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: 0.2999 S13: 0.1138 REMARK 3 S21: -0.6607 S22: -0.1941 S23: -0.0622 REMARK 3 S31: -0.1229 S32: 0.2332 S33: 0.1090 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2056 -22.1422 -16.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.2757 REMARK 3 T33: 0.0681 T12: 0.0577 REMARK 3 T13: -0.0860 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 9.9578 L22: 8.9158 REMARK 3 L33: 5.0176 L12: -1.4470 REMARK 3 L13: 5.6243 L23: -1.6515 REMARK 3 S TENSOR REMARK 3 S11: 0.2671 S12: 0.5663 S13: -0.3725 REMARK 3 S21: -1.3627 S22: -0.0286 S23: 0.7085 REMARK 3 S31: 0.2911 S32: -0.3071 S33: -0.2384 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -32.3102 -19.9237 -4.2141 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1050 REMARK 3 T33: 0.1819 T12: 0.0203 REMARK 3 T13: -0.0280 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.2803 L22: 3.5458 REMARK 3 L33: 4.9453 L12: -1.5507 REMARK 3 L13: -0.2771 L23: -2.8822 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.1243 S13: 0.0765 REMARK 3 S21: -0.1891 S22: 0.0283 S23: 0.1655 REMARK 3 S31: 0.1724 S32: -0.1095 S33: -0.0555 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0709 -23.3291 5.2249 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1310 REMARK 3 T33: 0.1354 T12: 0.0164 REMARK 3 T13: -0.0174 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 3.0102 L22: 2.5383 REMARK 3 L33: 2.0974 L12: 0.5329 REMARK 3 L13: -0.3182 L23: -0.5610 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.1549 S13: 0.2180 REMARK 3 S21: 0.1612 S22: -0.0815 S23: -0.0781 REMARK 3 S31: -0.2120 S32: 0.0050 S33: 0.0805 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6443 -32.7529 11.5801 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.1814 REMARK 3 T33: 0.1496 T12: -0.0002 REMARK 3 T13: -0.0152 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.6283 L22: 4.1904 REMARK 3 L33: 4.1144 L12: 0.1377 REMARK 3 L13: -0.7294 L23: -2.3093 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.2218 S13: 0.0845 REMARK 3 S21: 0.2977 S22: -0.0397 S23: -0.1114 REMARK 3 S31: -0.1258 S32: 0.0762 S33: 0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 WITH SAGITTAL FOCUSSING REMARK 200 OPTICS : RH COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RKB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.5 M LI2SO4, 0.2 REMARK 280 M NACL, 0.5 MM DTT, 25 MM MGCL2, 2 MM DADP, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.32300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.64600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.98450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.30750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 184 O HOH A 219 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 79 40.10 -89.55 REMARK 500 CYS A 81 -7.63 -151.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTV A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAT A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 179 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKB RELATED DB: PDB REMARK 900 THE STRUCTURE OF ADRENAL GLAND PROTEIN AD-004 REMARK 900 RELATED ID: 3IIJ RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-ADP COMPLEX AT 1.76 ANGSTROMS RESOLUTION. REMARK 900 RELATED ID: 3IIK RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-SO4 COMPLEX AT 1.95 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3IIL RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-MGADP-PI COMPLEX AT 2.0 ANGSTROMS RESOLUTION DBREF 3IIM A 1 172 UNP Q5F2S9 Q5F2S9_HUMAN 1 172 SEQADV 3IIM GLY A -7 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM PRO A -6 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM LEU A -5 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM GLY A -4 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM SER A -3 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM PRO A -2 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM GLU A -1 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIM PHE A 0 UNP Q5F2S9 EXPRESSION TAG SEQRES 1 A 180 GLY PRO LEU GLY SER PRO GLU PHE MET LEU LEU PRO ASN SEQRES 2 A 180 ILE LEU LEU THR GLY THR PRO GLY VAL GLY LYS THR THR SEQRES 3 A 180 LEU GLY LYS GLU LEU ALA SER LYS SER GLY LEU LYS TYR SEQRES 4 A 180 ILE ASN VAL GLY ASP LEU ALA ARG GLU GLU GLN LEU TYR SEQRES 5 A 180 ASP GLY TYR ASP GLU GLU TYR ASP CYS PRO ILE LEU ASP SEQRES 6 A 180 GLU ASP ARG VAL VAL ASP GLU LEU ASP ASN GLN MET ARG SEQRES 7 A 180 GLU GLY GLY VAL ILE VAL ASP TYR HIS GLY CYS ASP PHE SEQRES 8 A 180 PHE PRO GLU ARG TRP PHE HIS ILE VAL PHE VAL LEU ARG SEQRES 9 A 180 THR ASP THR ASN VAL LEU TYR GLU ARG LEU GLU THR ARG SEQRES 10 A 180 GLY TYR ASN GLU LYS LYS LEU THR ASP ASN ILE GLN CYS SEQRES 11 A 180 GLU ILE PHE GLN VAL LEU TYR GLU GLU ALA THR ALA SER SEQRES 12 A 180 TYR LYS GLU GLU ILE VAL HIS GLN LEU PRO SER ASN LYS SEQRES 13 A 180 PRO GLU GLU LEU GLU ASN ASN VAL ASP GLN ILE LEU LYS SEQRES 14 A 180 TRP ILE GLU GLN TRP ILE LYS ASP HIS ASN SER HET DTV A 173 8 HET EPE A 174 15 HET DAT A 175 26 HET SO4 A 176 5 HET SO4 A 177 5 HET SO4 A 178 5 HET SO4 A 179 5 HETNAM DTV (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM DAT 2'-DEOXYADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN EPE HEPES HETSYN DAT DADP FORMUL 2 DTV C4 H10 O2 S2 FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 DAT C10 H15 N5 O9 P2 FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *205(H2 O) HELIX 1 1 GLY A 15 GLY A 28 1 14 HELIX 2 2 VAL A 34 GLU A 41 1 8 HELIX 3 3 ASP A 57 GLY A 72 1 16 HELIX 4 4 PRO A 85 PHE A 89 5 5 HELIX 5 5 ASP A 98 ARG A 109 1 12 HELIX 6 6 ASN A 112 PHE A 125 1 14 HELIX 7 7 GLN A 126 TYR A 136 1 11 HELIX 8 8 LYS A 137 GLU A 139 5 3 HELIX 9 9 LYS A 148 HIS A 170 1 23 SHEET 1 A 5 LYS A 30 ASN A 33 0 SHEET 2 A 5 VAL A 74 ASP A 77 1 O ILE A 75 N LYS A 30 SHEET 3 A 5 ILE A 6 THR A 9 1 N LEU A 8 O VAL A 76 SHEET 4 A 5 ILE A 91 ARG A 96 1 O PHE A 93 N LEU A 7 SHEET 5 A 5 VAL A 141 PRO A 145 1 O LEU A 144 N ARG A 96 SHEET 1 B 2 TYR A 44 ASP A 48 0 SHEET 2 B 2 CYS A 53 LEU A 56 -1 O ILE A 55 N GLY A 46 SITE 1 AC1 5 GLU A 40 PRO A 85 GLU A 86 ARG A 87 SITE 2 AC1 5 HOH A 336 SITE 1 AC2 10 ARG A 96 GLN A 126 GLN A 143 PRO A 145 SITE 2 AC2 10 GLU A 164 GLN A 165 LYS A 168 HOH A 242 SITE 3 AC2 10 HOH A 261 HOH A 316 SITE 1 AC3 19 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC3 19 THR A 17 THR A 18 ARG A 105 ARG A 109 SITE 3 AC3 19 SER A 146 ASN A 147 LYS A 148 PRO A 149 SITE 4 AC3 19 LEU A 152 HOH A 208 HOH A 213 HOH A 223 SITE 5 AC3 19 HOH A 224 HOH A 227 HOH A 231 SITE 1 AC4 4 GLU A 138 HOH A 186 HOH A 311 HOH A 348 SITE 1 AC5 4 ILE A 91 PHE A 93 TRP A 162 HOH A 244 SITE 1 AC6 6 TYR A 129 VAL A 141 HIS A 142 GLN A 143 SITE 2 AC6 6 HOH A 361 HOH A 381 SITE 1 AC7 3 ASN A 112 GLU A 113 HOH A 199 CRYST1 99.276 99.276 57.969 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010073 0.005816 0.000000 0.00000 SCALE2 0.000000 0.011631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017251 0.00000