HEADER PHOTOSYNTHESIS 03-AUG-09 3IIS TITLE STRUCTURE OF THE RECONSTITUTED PERIDININ-CHLOROPHYLL A-PROTEIN (RFPCP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIDININ-CHLOROPHYLL A-BINDING PROTEIN 1, CHLOROPLASTIC; COMPND 3 CHAIN: M; COMPND 4 FRAGMENT: UNP RESIDUES 57-207; COMPND 5 SYNONYM: PCP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHIDINIUM CARTERAE; SOURCE 3 ORGANISM_COMMON: DINOFLAGELLATE; SOURCE 4 ORGANISM_TAXID: 2961; SOURCE 5 GENE: PCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PND707 KEYWDS ALPHA HELICAL, LIGHT HARVESTING PROTEIN, PHOTOSYNTHESIS, CAROTENOIDS, KEYWDS 2 DINOFLAGELLATES, CHLOROPHYLL, CHLOROPLAST, CHROMOPHORE, LIGHT- KEYWDS 3 HARVESTING POLYPEPTIDE, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR T.SCHULTE,E.HOFMANN REVDAT 3 06-SEP-23 3IIS 1 REMARK FORMUL LINK REVDAT 2 12-JAN-11 3IIS 1 JRNL REVDAT 1 24-NOV-09 3IIS 0 JRNL AUTH T.SCHULTE,D.M.NIEDZWIEDZKI,R.R.BIRGE,R.G.HILLER,T.POLIVKA, JRNL AUTH 2 E.HOFMANN,H.A.FRANK JRNL TITL IDENTIFICATION OF A SINGLE PERIDININ SENSING CHL-A JRNL TITL 2 EXCITATION IN RECONSTITUTED PCP BY CRYSTALLOGRAPHY AND JRNL TITL 3 SPECTROSCOPY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 20764 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19934052 JRNL DOI 10.1073/PNAS.0908938106 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2703 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 329 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1675 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2347 ; 3.339 ; 2.235 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 4.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;34.917 ;26.735 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;13.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 7.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.263 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1286 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 837 ; 0.792 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1351 ; 1.351 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 838 ; 2.131 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 967 ; 3.116 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 14.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : 4.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PPR, N-DOMAIN OF M MONOMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CDCL2, 0,1M SODIUM ACETATE PH REMARK 280 4.6, 20-24% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.81150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.81150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.54000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.81150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.54000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.81150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -250.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH M 283 LIES ON A SPECIAL POSITION. REMARK 375 HOH M 356 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL M 104 O HOH M 247 0.85 REMARK 500 C VAL M 104 O HOH M 247 1.67 REMARK 500 O2 PID M 613 O HOH M 190 1.85 REMARK 500 NE2 GLN M 30 O HOH M 355 1.86 REMARK 500 O HOH M 238 O HOH M 239 2.07 REMARK 500 OE1 GLU M 64 O HOH M 411 2.09 REMARK 500 O HOH M 274 O HOH M 342 2.16 REMARK 500 OE2 GLU M 64 O HOH M 258 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP M 5 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M 152 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 2 OE1 REMARK 620 2 GLU M 2 OE2 56.2 REMARK 620 3 HOH M 264 O 135.2 83.0 REMARK 620 4 HOH M 436 O 121.2 94.9 75.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M 152 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 2 OE1 REMARK 620 2 ASP M 5 OD2 95.5 REMARK 620 3 HOH M 436 O 125.7 89.0 REMARK 620 4 HOH M 437 O 165.4 76.6 67.1 REMARK 620 5 HOH M 438 O 91.2 98.2 141.7 78.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M 151 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 5 OD1 REMARK 620 2 ASP M 5 OD2 54.7 REMARK 620 3 HOH M 434 O 84.1 82.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K M 156 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS M 34 NZ REMARK 620 2 HOH M 222 O 117.5 REMARK 620 3 HOH M 289 O 57.6 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K M 155 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 39 OE1 REMARK 620 2 GLU M 39 OE2 48.9 REMARK 620 3 HOH M 282 O 111.2 100.4 REMARK 620 4 HOH M 284 O 90.0 63.6 134.9 REMARK 620 5 HOH M 286 O 145.9 106.6 94.9 56.0 REMARK 620 6 HOH M 287 O 74.4 58.8 43.3 114.8 116.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M 154 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN M 102 OD1 REMARK 620 2 ASP M 106 OD1 85.3 REMARK 620 3 ASP M 106 OD2 88.8 55.6 REMARK 620 4 HOH M 267 O 170.8 85.5 86.5 REMARK 620 5 HOH M 376 O 84.5 91.2 146.6 95.1 REMARK 620 6 HOH M 377 O 94.9 157.9 102.3 93.9 110.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M 153 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 116 OD2 REMARK 620 2 HOH M 289 O 94.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K M 156 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 222 O REMARK 620 2 HOH M 289 O 107.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K M 157 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 289 O REMARK 620 2 HOH M 290 O 96.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA M 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M 231 O REMARK 620 2 CLA M 601 NA 102.3 REMARK 620 3 CLA M 601 NB 94.7 89.4 REMARK 620 4 CLA M 601 NC 94.1 163.6 89.4 REMARK 620 5 CLA M 601 ND 101.3 91.0 163.6 85.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLA M 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J7Z M 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K M 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K M 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K M 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PPR RELATED DB: PDB REMARK 900 MAIN FORM OF PCP REMARK 900 RELATED ID: 2C9E RELATED DB: PDB REMARK 900 HIGH-SALT FORM OF PCP REMARK 900 RELATED ID: 3IIU RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICTS TO UNIPROT REFERENCE AT RESIDUE 87 AND 128 ARE DUE TO REMARK 999 HETEROLOGOUS EXPRESSION. DBREF 3IIS M 0 150 UNP P80484 PCP1_AMPCA 57 207 SEQADV 3IIS SER M 87 UNP P80484 ASN 144 SEE REMARK 999 SEQADV 3IIS ASN M 128 UNP P80484 SER 185 SEE REMARK 999 SEQRES 1 M 151 ALA ASP GLU ILE GLY ASP ALA ALA LYS LYS LEU GLY ASP SEQRES 2 M 151 ALA SER TYR ALA PHE ALA LYS GLU VAL ASP TRP ASN ASN SEQRES 3 M 151 GLY ILE PHE LEU GLN ALA PRO GLY LYS LEU GLN PRO LEU SEQRES 4 M 151 GLU ALA LEU LYS ALA ILE ASP LYS MET ILE VAL MET GLY SEQRES 5 M 151 ALA ALA ALA ASP PRO LYS LEU LEU LYS ALA ALA ALA GLU SEQRES 6 M 151 ALA HIS HIS LYS ALA ILE GLY SER VAL SER GLY PRO ASN SEQRES 7 M 151 GLY VAL THR SER ARG ALA ASP TRP ASP SER VAL ASN ALA SEQRES 8 M 151 ALA LEU GLY ARG VAL ILE ALA SER VAL PRO GLU ASN MET SEQRES 9 M 151 VAL MET ASP VAL TYR ASP SER VAL SER LYS ILE THR ASP SEQRES 10 M 151 PRO LYS VAL PRO ALA TYR MET LYS SER LEU VAL ASN GLY SEQRES 11 M 151 ALA ASP ALA GLU LYS ALA TYR GLU GLY PHE LEU ALA PHE SEQRES 12 M 151 LYS ASP VAL VAL LYS LYS SER GLN HET CLA M 601 68 HET PID M 611 57 HET PID M 612 51 HET PID M 613 62 HET PID M 614 46 HET J7Z M 615 75 HET CD M 151 1 HET CD M 152 2 HET CD M 153 1 HET CD M 154 1 HET K M 155 1 HET K M 156 2 HET K M 157 1 HET CL M 158 1 HET CL M 159 1 HET CL M 160 1 HET CL M 161 2 HET CL M 162 2 HETNAM CLA CHLOROPHYLL A HETNAM PID PERIDININ HETNAM J7Z (2S)-3-[(6-O-ALPHA-D-GALACTOPYRANOSYL-BETA-D- HETNAM 2 J7Z GALACTOPYRANOSYL)OXY]-2-[(3Z,6Z,9Z,12Z,15Z)-OCTADECA- HETNAM 3 J7Z 3,6,9,12,15-PENTAENOYLOXY]PROPYL (5Z,8Z,11Z,14Z,17Z)- HETNAM 4 J7Z ICOSA-5,8,11,14,17-PENTAENOATE HETNAM CD CADMIUM ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CLA C55 H72 MG N4 O5 FORMUL 3 PID 4(C39 H50 O7) FORMUL 7 J7Z C53 H80 O15 FORMUL 8 CD 4(CD 2+) FORMUL 12 K 3(K 1+) FORMUL 15 CL 5(CL 1-) FORMUL 20 HOH *286(H2 O) HELIX 1 1 ASP M 1 VAL M 21 1 21 HELIX 2 2 ASN M 25 GLN M 30 5 6 HELIX 3 3 GLN M 36 ALA M 54 1 19 HELIX 4 4 ASP M 55 SER M 72 1 18 HELIX 5 5 SER M 81 SER M 98 1 18 HELIX 6 6 PRO M 100 THR M 115 1 16 HELIX 7 7 LYS M 118 LEU M 126 1 9 HELIX 8 8 ASN M 128 SER M 149 1 22 LINK OE1 GLU M 2 CD B CD M 152 1555 1555 2.46 LINK OE1 GLU M 2 CD A CD M 152 1555 1555 2.36 LINK OE2 GLU M 2 CD B CD M 152 1555 1555 2.17 LINK OD1 ASP M 5 CD CD M 151 1555 1555 2.25 LINK OD2 ASP M 5 CD CD M 151 1555 1555 2.50 LINK OD2 ASP M 5 CD A CD M 152 1555 1555 2.37 LINK NZ BLYS M 34 K B K M 156 1555 1555 2.50 LINK OE1AGLU M 39 K K M 155 1555 1555 2.33 LINK OE2AGLU M 39 K K M 155 1555 1555 2.85 LINK OD1AASN M 102 CD CD M 154 1555 1555 2.50 LINK OD1 ASP M 106 CD CD M 154 1555 1555 2.22 LINK OD2 ASP M 106 CD CD M 154 1555 1555 2.43 LINK OD2 ASP M 116 CD CD M 153 1555 1555 2.33 LINK CD CD M 151 O HOH M 434 1555 1555 2.42 LINK CD B CD M 152 O HOH M 264 1555 1555 1.90 LINK CD A CD M 152 O HOH M 436 1555 1555 2.36 LINK CD B CD M 152 O HOH M 436 1555 1555 2.36 LINK CD A CD M 152 O HOH M 437 1555 1555 2.12 LINK CD A CD M 152 O HOH M 438 1555 1555 2.43 LINK CD CD M 153 O HOH M 289 1555 1555 2.53 LINK CD CD M 154 O HOH M 267 1555 1555 2.40 LINK CD CD M 154 O HOH M 376 1555 1555 2.64 LINK CD CD M 154 O HOH M 377 1555 1555 2.35 LINK K K M 155 O HOH M 282 1555 1555 2.45 LINK K K M 155 O HOH M 284 1555 1555 2.07 LINK K K M 155 O HOH M 286 1555 1555 2.57 LINK K K M 155 O HOH M 287 1555 1555 2.67 LINK K A K M 156 O HOH M 222 1555 1555 2.54 LINK K B K M 156 O HOH M 222 1555 1555 2.96 LINK K A K M 156 O HOH M 289 1555 1555 2.62 LINK K B K M 156 O HOH M 289 1555 1555 2.74 LINK K K M 157 O HOH M 289 1555 1555 2.94 LINK K K M 157 O HOH M 290 1555 1555 2.56 LINK O HOH M 231 MG CLA M 601 1555 1555 2.14 SITE 1 AC1 13 PHE M 17 LEU M 41 ALA M 62 ALA M 63 SITE 2 AC1 13 HIS M 66 LEU M 92 ALA M 132 HOH M 231 SITE 3 AC1 13 PID M 611 PID M 612 PID M 613 PID M 614 SITE 4 AC1 13 J7Z M 615 SITE 1 AC2 18 PHE M 17 TRP M 23 PHE M 28 LEU M 29 SITE 2 AC2 18 LEU M 35 PRO M 37 ALA M 40 PRO M 120 SITE 3 AC2 18 ALA M 121 MET M 123 LYS M 124 ALA M 132 SITE 4 AC2 18 TYR M 136 HOH M 196 HOH M 226 HOH M 353 SITE 5 AC2 18 CLA M 601 J7Z M 615 SITE 1 AC3 12 ILE M 27 PHE M 28 GLN M 30 ALA M 31 SITE 2 AC3 12 ILE M 44 MET M 47 VAL M 119 TYR M 122 SITE 3 AC3 12 MET M 123 CLA M 601 PID M 613 J7Z M 615 SITE 1 AC4 16 MET M 47 GLY M 51 LEU M 59 ALA M 63 SITE 2 AC4 16 VAL M 104 MET M 105 VAL M 107 TYR M 108 SITE 3 AC4 16 TYR M 136 LEU M 140 HOH M 190 HOH M 192 SITE 4 AC4 16 CLA M 601 PID M 612 PID M 614 J7Z M 615 SITE 1 AC5 20 TRP M 23 LEU M 41 ALA M 69 ILE M 70 SITE 2 AC5 20 VAL M 73 GLY M 78 VAL M 79 THR M 80 SITE 3 AC5 20 TRP M 85 ASN M 89 LEU M 92 GLU M 101 SITE 4 AC5 20 PHE M 139 LYS M 143 VAL M 146 GLN M 150 SITE 5 AC5 20 HOH M 198 HOH M 345 CLA M 601 PID M 613 SITE 1 AC6 24 MET M 47 TYR M 108 VAL M 111 SER M 112 SITE 2 AC6 24 PRO M 120 ALA M 121 GLU M 133 TYR M 136 SITE 3 AC6 24 GLU M 137 HOH M 187 HOH M 188 HOH M 190 SITE 4 AC6 24 HOH M 191 HOH M 192 HOH M 193 HOH M 194 SITE 5 AC6 24 HOH M 195 HOH M 196 HOH M 197 HOH M 219 SITE 6 AC6 24 CLA M 601 PID M 611 PID M 612 PID M 613 SITE 1 AC7 5 ASP M 5 ASP M 22 CL M 158 HOH M 307 SITE 2 AC7 5 HOH M 434 SITE 1 AC8 7 GLU M 2 ASP M 5 CL M 159 HOH M 264 SITE 2 AC8 7 HOH M 436 HOH M 437 HOH M 438 SITE 1 AC9 7 ASP M 109 ASP M 116 K M 157 CL M 160 SITE 2 AC9 7 CL M 161 HOH M 247 HOH M 289 SITE 1 BC1 5 ASN M 102 ASP M 106 HOH M 267 HOH M 376 SITE 2 BC1 5 HOH M 377 SITE 1 BC2 6 GLU M 39 CL M 162 HOH M 282 HOH M 284 SITE 2 BC2 6 HOH M 286 HOH M 287 SITE 1 BC3 5 LYS M 34 ASP M 109 HOH M 222 HOH M 289 SITE 2 BC3 5 HOH M 374 SITE 1 BC4 7 CD M 153 HOH M 247 HOH M 289 HOH M 290 SITE 2 BC4 7 HOH M 374 HOH M 375 HOH M 376 SITE 1 BC5 5 ALA M 0 ASP M 5 ASP M 22 ASN M 25 SITE 2 BC5 5 CD M 151 SITE 1 BC6 3 GLU M 2 CD M 152 HOH M 264 SITE 1 BC7 4 ASP M 116 LYS M 118 CD M 153 CL M 161 SITE 1 BC8 6 MET M 105 ASP M 109 ASP M 116 LYS M 118 SITE 2 BC8 6 CD M 153 CL M 160 SITE 1 BC9 5 GLN M 36 PRO M 37 LEU M 38 GLU M 39 SITE 2 BC9 5 K M 155 CRYST1 68.690 81.623 75.080 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013319 0.00000