HEADER IMMUNE SYSTEM 05-AUG-09 3IKC TITLE STRUCTURE OF S67-27 IN COMPLEX WITH KDO(2.8)-7-O-METHYL-KDO COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN LIGHT CHAIN (IGG3); COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN (IGG3); COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: ASCITES; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: ASCITES KEYWDS ANTIBODY, KDO, CHLAMYDIA, LPS, FAB, CARBOHYDRATE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,R.J.BLACKLER,S.V.EVANS REVDAT 4 06-SEP-23 3IKC 1 HETSYN REVDAT 3 29-JUL-20 3IKC 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 12-JAN-10 3IKC 1 JRNL REVDAT 1 06-OCT-09 3IKC 0 JRNL AUTH C.L.BROOKS,R.J.BLACKLER,G.SIXTA,P.KOSMA,S.MULLER-LOENNIES, JRNL AUTH 2 L.BRADE,T.HIRAMA,C.R.MACKENZIE,H.BRADE,S.V.EVANS JRNL TITL THE ROLE OF CDR H3 IN ANTIBODY RECOGNITION OF A SYNTHETIC JRNL TITL 2 ANALOG OF A LIPOPOLYSACCHARIDE ANTIGEN. JRNL REF GLYCOBIOLOGY V. 20 138 2010 JRNL REFN ISSN 0959-6658 JRNL PMID 19767317 JRNL DOI 10.1093/GLYCOB/CWP150 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 26678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9640 - 5.5650 0.91 2699 132 0.2080 0.2640 REMARK 3 2 5.5650 - 4.4330 0.83 2351 123 0.1680 0.1780 REMARK 3 3 4.4330 - 3.8770 0.84 2317 127 0.1880 0.2270 REMARK 3 4 3.8770 - 3.5250 0.86 2405 124 0.2160 0.2790 REMARK 3 5 3.5250 - 3.2730 0.90 2483 129 0.2210 0.2830 REMARK 3 6 3.2730 - 3.0810 0.94 2552 134 0.2520 0.3160 REMARK 3 7 3.0810 - 2.9270 0.96 2635 151 0.2680 0.3690 REMARK 3 8 2.9270 - 2.8000 0.96 2641 134 0.2730 0.3840 REMARK 3 9 2.8000 - 2.6930 0.97 2623 145 0.2850 0.3540 REMARK 3 10 2.6930 - 2.6000 0.98 2624 149 0.2950 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 24.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.72500 REMARK 3 B22 (A**2) : -10.76400 REMARK 3 B33 (A**2) : -2.96100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7014 REMARK 3 ANGLE : 0.901 9531 REMARK 3 CHIRALITY : 0.056 1079 REMARK 3 PLANARITY : 0.004 1198 REMARK 3 DIHEDRAL : 17.103 2503 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.910 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.86 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1Q9W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MGCL2, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 CYS B 128 REMARK 465 SER B 129 REMARK 465 ASP B 130 REMARK 465 THR B 131 REMARK 465 SER B 132 REMARK 465 ASP C 1 REMARK 465 CYS D 128 REMARK 465 SER D 129 REMARK 465 ASP D 130 REMARK 465 THR D 131 REMARK 465 SER D 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -40.09 74.67 REMARK 500 ASP A 60 -36.77 -36.04 REMARK 500 SER A 77 112.08 -160.35 REMARK 500 LEU A 94 -140.87 59.46 REMARK 500 ASN A 189 -50.16 -122.69 REMARK 500 ASN A 211 47.23 -82.60 REMARK 500 ALA B 114 -165.63 -73.48 REMARK 500 THR B 116 106.54 -59.94 REMARK 500 ALA C 51 -43.32 73.04 REMARK 500 ALA C 84 159.52 178.86 REMARK 500 SER C 91 28.73 -143.39 REMARK 500 LEU C 94 -135.03 51.23 REMARK 500 PRO C 140 -174.98 -69.21 REMARK 500 SER C 170 18.55 59.26 REMARK 500 SER C 200 148.78 -170.36 REMARK 500 LYS D 43 -164.60 -105.43 REMARK 500 ASP D 95 -157.23 -89.22 REMARK 500 ALA D 114 -168.67 -74.73 REMARK 500 PHE D 146 133.04 -171.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 215 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 58 OE2 REMARK 620 2 HOH D 259 O 60.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IJH RELATED DB: PDB REMARK 900 RELATED ID: 3IJS RELATED DB: PDB REMARK 900 RELATED ID: 3IJY RELATED DB: PDB DBREF 3IKC A 1 212 PDB 3IKC 3IKC 1 212 DBREF 3IKC C 1 212 PDB 3IKC 3IKC 1 212 DBREF 3IKC B 1 213 PDB 3IKC 3IKC 1 213 DBREF 3IKC D 1 213 PDB 3IKC 3IKC 1 213 SEQRES 1 A 218 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 218 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 218 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 218 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 218 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 218 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 218 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 218 TYR TYR CYS LYS GLN SER ASN ASN LEU ARG THR PHE GLY SEQRES 9 A 218 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 B 226 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 226 PRO GLY ASN SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 226 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 226 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 226 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 B 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 226 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 226 ASP SER ALA THR TYR TYR CYS ALA ARG ASP ILE SER PRO SEQRES 9 B 226 SER TYR GLY VAL TYR TYR GLU GLY PHE ALA TYR TRP GLY SEQRES 10 B 226 GLN GLY THR LEU VAL THR VAL SER ALA ALA THR THR THR SEQRES 11 B 226 ALA PRO SER VAL TYR PRO LEU VAL PRO GLY CYS SER ASP SEQRES 12 B 226 THR SER GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS SEQRES 13 B 226 GLY TYR PHE PRO GLU PRO VAL THR VAL LYS TRP ASN TYR SEQRES 14 B 226 GLY ALA LEU SER SER GLY VAL ARG THR VAL SER SER VAL SEQRES 15 B 226 LEU GLN SER GLY PHE TYR SER LEU SER SER LEU VAL THR SEQRES 16 B 226 VAL PRO SER SER THR TRP PRO SER GLN THR VAL ILE CYS SEQRES 17 B 226 ASN VAL ALA HIS PRO ALA SER LYS THR GLU LEU ILE LYS SEQRES 18 B 226 ARG ILE GLU PRO ARG SEQRES 1 C 218 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 C 218 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 C 218 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 C 218 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 C 218 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 C 218 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 C 218 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 C 218 TYR TYR CYS LYS GLN SER ASN ASN LEU ARG THR PHE GLY SEQRES 9 C 218 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 C 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 C 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 C 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 C 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 C 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 C 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 C 218 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 C 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 D 226 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 226 PRO GLY ASN SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 D 226 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 D 226 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 D 226 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 D 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 D 226 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 D 226 ASP SER ALA THR TYR TYR CYS ALA ARG ASP ILE SER PRO SEQRES 9 D 226 SER TYR GLY VAL TYR TYR GLU GLY PHE ALA TYR TRP GLY SEQRES 10 D 226 GLN GLY THR LEU VAL THR VAL SER ALA ALA THR THR THR SEQRES 11 D 226 ALA PRO SER VAL TYR PRO LEU VAL PRO GLY CYS SER ASP SEQRES 12 D 226 THR SER GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS SEQRES 13 D 226 GLY TYR PHE PRO GLU PRO VAL THR VAL LYS TRP ASN TYR SEQRES 14 D 226 GLY ALA LEU SER SER GLY VAL ARG THR VAL SER SER VAL SEQRES 15 D 226 LEU GLN SER GLY PHE TYR SER LEU SER SER LEU VAL THR SEQRES 16 D 226 VAL PRO SER SER THR TRP PRO SER GLN THR VAL ILE CYS SEQRES 17 D 226 ASN VAL ALA HIS PRO ALA SER LYS THR GLU LEU ILE LYS SEQRES 18 D 226 ARG ILE GLU PRO ARG HET KME E 1 20 HET KDO E 2 15 HET KME F 1 20 HET KDO F 2 15 HET MG B 215 1 HET MG D 215 1 HETNAM KME (1E)-PROP-1-EN-1-YL 3-DEOXY-7-O-METHYL-ALPHA-D-MANNO- HETNAM 2 KME OCT-2-ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM MG MAGNESIUM ION HETSYN KME (1E)-PROP-1-EN-1-YL 3-DEOXY-7-O-METHYL-ALPHA-D-MANNO- HETSYN 2 KME OCT-2-ULOSIDONIC ACID; (1E)-PROP-1-EN-1-YL 3-DEOXY-7- HETSYN 3 KME O-METHYL-D-MANNO-OCT-2-ULOSIDONIC ACID; (1E)-PROP-1- HETSYN 4 KME EN-1-YL 3-DEOXY-7-O-METHYL-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 5 KME 2(C12 H20 O8) FORMUL 5 KDO 2(C8 H14 O8) FORMUL 7 MG 2(MG 2+) FORMUL 9 HOH *333(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 SER A 126 1 7 HELIX 3 3 LYS A 182 GLU A 186 1 5 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 ASN B 52A GLY B 54 5 5 HELIX 6 6 ALA B 61 LYS B 64 5 4 HELIX 7 7 ARG B 83 SER B 87 5 5 HELIX 8 8 TYR B 156 ALA B 158 5 3 HELIX 9 9 PRO B 200 SER B 202 5 3 HELIX 10 10 GLN C 79 LEU C 83 5 5 HELIX 11 11 SER C 120 THR C 125 1 6 HELIX 12 12 LYS C 182 ARG C 187 1 6 HELIX 13 13 THR D 28 TYR D 32 5 5 HELIX 14 14 ALA D 61 LYS D 64 5 4 HELIX 15 15 ARG D 83 SER D 87 5 5 HELIX 16 16 TYR D 156 ALA D 158 5 3 HELIX 17 17 PRO D 200 LYS D 203 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N TYR A 86 O THR A 101 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N TYR A 86 O THR A 101 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 LEU A 27C ASN A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N ASN A 27D SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O PHE A 134 N SER A 115 SHEET 3 E 4 TYR A 172 THR A 181 -1 O LEU A 180 N ALA A 129 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N LEU A 159 O THR A 177 SHEET 1 F 4 SER A 152 ARG A 154 0 SHEET 2 F 4 ASN A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 F 4 SER A 190 THR A 196 -1 O THR A 196 N ASN A 144 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 G 4 MET B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 G 4 ILE B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 G 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 H 6 GLY B 10 VAL B 12 0 SHEET 2 H 6 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 109 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O ILE B 51 N MET B 34 SHEET 6 H 6 THR B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 I 4 SER B 120 LEU B 124 0 SHEET 2 I 4 SER B 135 TYR B 145 -1 O LEU B 141 N TYR B 122 SHEET 3 I 4 PHE B 174 PRO B 184 -1 O LEU B 177 N VAL B 142 SHEET 4 I 4 VAL B 163 THR B 165 -1 N ARG B 164 O LEU B 180 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 SER B 135 TYR B 145 -1 O LEU B 141 N TYR B 122 SHEET 3 J 4 PHE B 174 PRO B 184 -1 O LEU B 177 N VAL B 142 SHEET 4 J 4 VAL B 169 GLN B 171 -1 N GLN B 171 O PHE B 174 SHEET 1 K 6 THR B 151 TRP B 154 0 SHEET 2 K 6 ILE B 194 HIS B 199 -1 O ALA B 198 N THR B 151 SHEET 3 K 6 THR B 204 ARG B 209 -1 O LEU B 206 N VAL B 197 SHEET 4 K 6 THR D 204 ARG D 209 -1 O ILE D 207 N GLU B 205 SHEET 5 K 6 ILE D 194 HIS D 199 -1 N VAL D 197 O LEU D 206 SHEET 6 K 6 THR D 151 TRP D 154 -1 N LYS D 153 O ASN D 196 SHEET 1 L 4 MET C 4 SER C 7 0 SHEET 2 L 4 VAL C 19 SER C 25 -1 O SER C 22 N SER C 7 SHEET 3 L 4 ASP C 70 ILE C 75 -1 O PHE C 71 N CYS C 23 SHEET 4 L 4 PHE C 62 SER C 67 -1 N SER C 65 O THR C 72 SHEET 1 M 6 SER C 10 SER C 14 0 SHEET 2 M 6 THR C 101 LYS C 106 1 O LYS C 106 N VAL C 13 SHEET 3 M 6 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 4 M 6 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 M 6 LYS C 45 TYR C 49 -1 O LYS C 45 N GLN C 37 SHEET 6 M 6 THR C 53 ARG C 54 -1 O THR C 53 N TYR C 49 SHEET 1 N 4 SER C 10 SER C 14 0 SHEET 2 N 4 THR C 101 LYS C 106 1 O LYS C 106 N VAL C 13 SHEET 3 N 4 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 4 N 4 THR C 96 PHE C 97 -1 O THR C 96 N GLN C 90 SHEET 1 O 4 THR C 113 PHE C 117 0 SHEET 2 O 4 GLY C 128 PHE C 138 -1 O PHE C 134 N SER C 115 SHEET 3 O 4 TYR C 172 THR C 181 -1 O LEU C 180 N ALA C 129 SHEET 4 O 4 VAL C 158 TRP C 162 -1 N LEU C 159 O THR C 177 SHEET 1 P 4 SER C 152 ARG C 154 0 SHEET 2 P 4 ASN C 144 ILE C 149 -1 N ILE C 149 O SER C 152 SHEET 3 P 4 SER C 190 THR C 196 -1 O THR C 192 N LYS C 148 SHEET 4 P 4 ILE C 204 ASN C 209 -1 O PHE C 208 N TYR C 191 SHEET 1 Q 4 MET D 3 SER D 7 0 SHEET 2 Q 4 LEU D 18 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 Q 4 ILE D 77 MET D 82 -1 O LEU D 78 N CYS D 22 SHEET 4 Q 4 PHE D 67 ASP D 72 -1 N THR D 68 O GLN D 81 SHEET 1 R 6 GLY D 10 VAL D 12 0 SHEET 2 R 6 THR D 107 VAL D 111 1 O THR D 110 N GLY D 10 SHEET 3 R 6 ALA D 88 ARG D 94 -1 N ALA D 88 O VAL D 109 SHEET 4 R 6 MET D 34 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 R 6 GLU D 46 ILE D 51 -1 O GLY D 49 N TRP D 36 SHEET 6 R 6 THR D 57 TYR D 59 -1 O GLU D 58 N PHE D 50 SHEET 1 S 4 GLY D 10 VAL D 12 0 SHEET 2 S 4 THR D 107 VAL D 111 1 O THR D 110 N GLY D 10 SHEET 3 S 4 ALA D 88 ARG D 94 -1 N ALA D 88 O VAL D 109 SHEET 4 S 4 TYR D 102 TRP D 103 -1 O TYR D 102 N ARG D 94 SHEET 1 T 4 SER D 120 LEU D 124 0 SHEET 2 T 4 SER D 135 TYR D 145 -1 O LYS D 143 N SER D 120 SHEET 3 T 4 PHE D 174 PRO D 184 -1 O TYR D 175 N TYR D 145 SHEET 4 T 4 VAL D 163 THR D 165 -1 N ARG D 164 O LEU D 180 SHEET 1 U 4 SER D 120 LEU D 124 0 SHEET 2 U 4 SER D 135 TYR D 145 -1 O LYS D 143 N SER D 120 SHEET 3 U 4 PHE D 174 PRO D 184 -1 O TYR D 175 N TYR D 145 SHEET 4 U 4 VAL D 169 GLN D 171 -1 N GLN D 171 O PHE D 174 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 140 CYS B 195 1555 1555 2.04 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.04 SSBOND 6 CYS C 133 CYS C 193 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 92 1555 1555 2.04 SSBOND 8 CYS D 140 CYS D 195 1555 1555 2.04 LINK O8 KME E 1 C2 KDO E 2 1555 1555 1.44 LINK O8 KME F 1 C2 KDO F 2 1555 1555 1.42 LINK OE2 GLU B 58 MG MG B 215 1555 1555 2.57 LINK OE2 GLU D 58 MG MG D 215 1555 1555 2.89 LINK MG MG D 215 O HOH D 259 1555 1555 2.85 CISPEP 1 SER A 7 PRO A 8 0 -1.73 CISPEP 2 TYR A 139 PRO A 140 0 3.32 CISPEP 3 PHE B 146 PRO B 147 0 -2.17 CISPEP 4 GLU B 148 PRO B 149 0 -4.38 CISPEP 5 TRP B 188 PRO B 189 0 6.53 CISPEP 6 SER C 7 PRO C 8 0 -2.14 CISPEP 7 TYR C 139 PRO C 140 0 2.47 CISPEP 8 PHE D 146 PRO D 147 0 0.68 CISPEP 9 GLU D 148 PRO D 149 0 -1.32 CISPEP 10 TRP D 188 PRO D 189 0 1.88 CRYST1 46.240 127.590 155.510 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021626 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006430 0.00000