HEADER LYASE 06-AUG-09 3IKW TITLE STRUCTURE OF HEPARINASE I FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN LYASE I; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_4675; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPARIN, POLYSACCHARIDE LYASE, BETA-JELLY ROLL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.GARRON,M.CYGLER,D.SHAYA REVDAT 5 21-FEB-24 3IKW 1 REMARK LINK REVDAT 4 01-NOV-17 3IKW 1 REMARK REVDAT 3 15-DEC-09 3IKW 1 JRNL REVDAT 2 20-OCT-09 3IKW 1 JRNL REVDAT 1 29-SEP-09 3IKW 0 JRNL AUTH Y.H.HAN,M.L.GARRON,H.Y.KIM,W.S.KIM,Z.ZHANG,K.S.RYU,D.SHAYA, JRNL AUTH 2 Z.XIAO,C.CHEONG,Y.S.KIM,R.J.LINHARDT,Y.H.JEON,M.CYGLER JRNL TITL STRUCTURAL SNAPSHOTS OF HEPARIN DEPOLYMERIZATION BY HEPARIN JRNL TITL 2 LYASE I. JRNL REF J.BIOL.CHEM. V. 284 34019 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19801541 JRNL DOI 10.1074/JBC.M109.025338 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 91118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 299 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3180 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4341 ; 1.321 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 6.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;34.425 ;24.379 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;11.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.379 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2506 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 0.731 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3162 ; 1.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1234 ; 1.902 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1162 ; 2.956 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 HIGH-RESOLUTION DOUBLE-CRYSTAL REMARK 200 SI(220) SAGITTAL FOCUSING, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 3350, 0.1 M TRIS-HCL, 0.8 MM REMARK 280 CACL2, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.13150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.24700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.13150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.24700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 3 OG1 CG2 REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 43 CE NZ REMARK 470 ASP A 56 CG OD1 OD2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ARG A 97 CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 203 NZ REMARK 470 LYS A 205 NZ REMARK 470 LYS A 212 NZ REMARK 470 LYS A 215 CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 LYS A 329 CE NZ REMARK 470 LYS A 332 NZ REMARK 470 LYS A 339 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 354 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 35 -3.98 -148.30 REMARK 500 LYS A 185 -115.97 58.60 REMARK 500 ARG A 255 59.16 -94.12 REMARK 500 SER A 271 -158.15 -113.76 REMARK 500 LYS A 306 -126.04 52.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 222 OE1 REMARK 620 2 GLU A 222 OE2 51.8 REMARK 620 3 TRP A 248 O 99.8 88.9 REMARK 620 4 ASN A 345 O 154.8 151.2 92.5 REMARK 620 5 ASP A 346 OD1 84.4 95.0 175.5 83.0 REMARK 620 6 HOH A 384 O 80.9 129.1 80.8 79.5 98.3 REMARK 620 7 HOH A 392 O 124.3 73.9 89.8 77.3 89.1 154.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 381 DBREF 3IKW A 3 376 UNP Q89YQ6 Q89YQ6_BACTN 3 376 SEQRES 1 A 374 THR ALA GLN THR LYS ASN THR GLN THR LEU MET PRO LEU SEQRES 2 A 374 THR GLU ARG VAL ASN VAL GLN ALA ASP SER ALA ARG ILE SEQRES 3 A 374 ASN GLN ILE ILE ASP GLY CYS TRP VAL ALA VAL GLY THR SEQRES 4 A 374 ASN LYS PRO HIS ALA ILE GLN ARG ASP PHE THR ASN LEU SEQRES 5 A 374 PHE ASP GLY LYS PRO SER TYR ARG PHE GLU LEU LYS THR SEQRES 6 A 374 GLU ASP ASN THR LEU GLU GLY TYR ALA LYS GLY GLU THR SEQRES 7 A 374 LYS GLY ARG ALA GLU PHE SER TYR CYS TYR ALA THR SER SEQRES 8 A 374 ASP ASP PHE ARG GLY LEU PRO ALA ASP VAL TYR GLN LYS SEQRES 9 A 374 ALA GLN ILE THR LYS THR VAL TYR HIS HIS GLY LYS GLY SEQRES 10 A 374 ALA CYS PRO GLN GLY SER SER ARG ASP TYR GLU PHE SER SEQRES 11 A 374 VAL TYR ILE PRO SER SER LEU ASP SER ASN VAL SER THR SEQRES 12 A 374 ILE PHE ALA GLN TRP HIS GLY MET PRO ASP ARG THR LEU SEQRES 13 A 374 VAL GLN THR PRO GLN GLY GLU VAL LYS LYS LEU THR VAL SEQRES 14 A 374 ASP GLU PHE VAL GLU LEU GLU LYS THR THR PHE PHE LYS SEQRES 15 A 374 LYS ASN VAL GLY HIS GLU LYS VAL ALA ARG LEU ASP LYS SEQRES 16 A 374 GLN GLY ASN PRO VAL LYS ASP LYS ASN GLY LYS PRO VAL SEQRES 17 A 374 TYR LYS ALA GLY LYS PRO ASN GLY TRP LEU VAL GLU GLN SEQRES 18 A 374 GLY GLY TYR PRO PRO LEU ALA PHE GLY PHE SER GLY GLY SEQRES 19 A 374 LEU PHE TYR ILE LYS ALA ASN SER ASP ARG LYS TRP LEU SEQRES 20 A 374 THR ASP LYS ASP ASP ARG CYS ASN ALA ASN PRO GLY LYS SEQRES 21 A 374 THR PRO VAL MET LYS PRO LEU THR SER GLU TYR LYS ALA SEQRES 22 A 374 SER THR ILE ALA TYR LYS LEU PRO PHE ALA ASP PHE PRO SEQRES 23 A 374 LYS ASP CYS TRP ILE THR PHE ARG VAL HIS ILE ASP TRP SEQRES 24 A 374 THR VAL TYR GLY LYS GLU ALA GLU THR ILE VAL LYS PRO SEQRES 25 A 374 GLY MET LEU ASP VAL ARG MET ASP TYR GLN GLU GLN GLY SEQRES 26 A 374 LYS LYS VAL SER LYS HIS ILE VAL ASP ASN GLU LYS ILE SEQRES 27 A 374 LEU ILE GLY ARG ASN ASP GLU ASP GLY TYR TYR PHE LYS SEQRES 28 A 374 PHE GLY ILE TYR ARG VAL GLY ASP SER THR VAL PRO VAL SEQRES 29 A 374 CYS TYR ASN LEU ALA GLY TYR SER GLU ARG HET CA A 1 1 HET EDO A 377 4 HET EDO A 2 4 HET EDO A 378 4 HET EDO A 379 4 HET EDO A 380 4 HET EDO A 381 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 HOH *381(H2 O) HELIX 1 1 ARG A 27 ILE A 31 5 5 HELIX 2 2 THR A 92 ARG A 97 5 6 HELIX 3 3 ALA A 101 THR A 110 1 10 HELIX 4 4 VAL A 113 GLY A 117 5 5 HELIX 5 5 THR A 170 LYS A 179 1 10 HELIX 6 6 ALA A 285 PHE A 287 5 3 HELIX 7 7 LYS A 306 GLU A 309 5 4 SHEET 1 A 8 LEU A 12 PRO A 14 0 SHEET 2 A 8 ILE A 47 PHE A 55 -1 O ARG A 49 N MET A 13 SHEET 3 A 8 LYS A 58 LEU A 65 -1 O ARG A 62 N GLN A 48 SHEET 4 A 8 VAL A 366 ARG A 376 -1 O TYR A 368 N PHE A 63 SHEET 5 A 8 SER A 126 TYR A 134 -1 N ASP A 128 O ARG A 376 SHEET 6 A 8 TRP A 292 ASP A 300 -1 O PHE A 295 N PHE A 131 SHEET 7 A 8 GLY A 315 GLN A 324 -1 O ASP A 318 N HIS A 298 SHEET 8 A 8 LYS A 329 ILE A 340 -1 O LYS A 332 N MET A 321 SHEET 1 B 4 VAL A 37 GLY A 40 0 SHEET 2 B 4 THR A 80 SER A 87 -1 O SER A 87 N VAL A 37 SHEET 3 B 4 TYR A 350 ARG A 358 -1 O ILE A 356 N ALA A 84 SHEET 4 B 4 ALA A 120 CYS A 121 -1 N CYS A 121 O TYR A 350 SHEET 1 C 8 LEU A 72 GLU A 73 0 SHEET 2 C 8 THR A 80 SER A 87 -1 O LYS A 81 N LEU A 72 SHEET 3 C 8 TYR A 350 ARG A 358 -1 O ILE A 356 N ALA A 84 SHEET 4 C 8 THR A 145 GLY A 152 -1 N GLN A 149 O LYS A 353 SHEET 5 C 8 LEU A 229 SER A 234 -1 O PHE A 231 N ALA A 148 SHEET 6 C 8 LEU A 237 ASP A 245 -1 O TYR A 239 N GLY A 232 SHEET 7 C 8 LYS A 274 PRO A 283 -1 O THR A 277 N ALA A 242 SHEET 8 C 8 LEU A 269 THR A 270 -1 N LEU A 269 O SER A 276 SHEET 1 D 4 GLY A 343 ARG A 344 0 SHEET 2 D 4 LEU A 237 ASP A 245 1 N ASN A 243 O GLY A 343 SHEET 3 D 4 LYS A 274 PRO A 283 -1 O THR A 277 N ALA A 242 SHEET 4 D 4 LEU A 269 THR A 270 -1 N LEU A 269 O SER A 276 SHEET 1 E 5 VAL A 166 LYS A 168 0 SHEET 2 E 5 LEU A 158 GLN A 160 -1 N VAL A 159 O LYS A 167 SHEET 3 E 5 TYR A 211 VAL A 221 -1 O LEU A 220 N GLN A 160 SHEET 4 E 5 VAL A 187 ALA A 193 -1 N GLU A 190 O GLY A 214 SHEET 5 E 5 THR A 181 LYS A 184 -1 N PHE A 182 O HIS A 189 SHEET 1 F 2 VAL A 303 TYR A 304 0 SHEET 2 F 2 ILE A 311 LYS A 313 -1 O LYS A 313 N VAL A 303 LINK CA CA A 1 OE1 GLU A 222 1555 1555 2.54 LINK CA CA A 1 OE2 GLU A 222 1555 1555 2.43 LINK CA CA A 1 O TRP A 248 1555 1555 2.30 LINK CA CA A 1 O ASN A 345 1555 1555 2.44 LINK CA CA A 1 OD1 ASP A 346 1555 1555 2.31 LINK CA CA A 1 O HOH A 384 1555 1555 2.38 LINK CA CA A 1 O HOH A 392 1555 1555 2.44 SITE 1 AC1 6 GLU A 222 TRP A 248 ASN A 345 ASP A 346 SITE 2 AC1 6 HOH A 384 HOH A 392 SITE 1 AC2 4 GLN A 10 ASN A 29 ILE A 31 HOH A 393 SITE 1 AC3 4 ASN A 186 ASP A 251 LYS A 252 HOH A 721 SITE 1 AC4 6 ASN A 29 GLN A 160 THR A 161 GLY A 218 SITE 2 AC4 6 HOH A 693 HOH A 703 SITE 1 AC5 7 SER A 137 SER A 138 LEU A 139 GLU A 176 SITE 2 AC5 7 HOH A 506 HOH A 509 HOH A 739 SITE 1 AC6 3 VAL A 166 TRP A 248 GLU A 307 SITE 1 AC7 6 ASN A 206 ARG A 246 SER A 271 GLU A 272 SITE 2 AC7 6 LYS A 274 HOH A 391 CRYST1 76.263 110.494 44.158 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022646 0.00000