HEADER ISOMERASE 07-AUG-09 3ILW TITLE STRUCTURE OF DNA GYRASE SUBUNIT A N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GYRA, MT0006, MTCY10H4.04, RV0006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B DERIVATIVE KEYWDS DNA TOPOLOGY, TOPOISOMERASE, GYRASE, ANTIBIOTIC RESISTANCE, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, BREAKAGE-REUNION DOMAIN, STRUCTURAL KEYWDS 3 GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, ATP-BINDING, KEYWDS 4 DNA-BINDING, ISOMERASE, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR E.M.TRETTER,A.J.SCHOEFFLER,S.R.WEISFIELD,J.M.BERGER,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 5 06-SEP-23 3ILW 1 REMARK REVDAT 4 01-NOV-17 3ILW 1 REMARK REVDAT 3 13-JUL-11 3ILW 1 VERSN REVDAT 2 28-APR-10 3ILW 1 JRNL REVDAT 1 06-OCT-09 3ILW 0 JRNL AUTH E.M.TRETTER,A.J.SCHOEFFLER,S.R.WEISFIELD,J.M.BERGER JRNL TITL CRYSTAL STRUCTURE OF THE DNA GYRASE GYRA N-TERMINAL DOMAIN JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF PROTEINS V. 78 492 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19787774 JRNL DOI 10.1002/PROT.22600 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2009_02_15_2320_3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 154905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.420 REMARK 3 FREE R VALUE TEST SET COUNT : 2192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1780 - 4.0390 0.99 10980 159 0.1600 0.1830 REMARK 3 2 4.0390 - 3.2060 0.99 10906 157 0.1580 0.1810 REMARK 3 3 3.2060 - 2.8010 0.98 10866 158 0.1810 0.2000 REMARK 3 4 2.8010 - 2.5450 0.98 10828 155 0.1780 0.1950 REMARK 3 5 2.5450 - 2.3620 0.97 10775 147 0.1720 0.1920 REMARK 3 6 2.3620 - 2.2230 0.97 10735 151 0.1650 0.1840 REMARK 3 7 2.2230 - 2.1120 0.96 10614 155 0.1590 0.1840 REMARK 3 8 2.1120 - 2.0200 0.96 10666 152 0.1690 0.1850 REMARK 3 9 2.0200 - 1.9420 0.96 10585 154 0.1770 0.1810 REMARK 3 10 1.9420 - 1.8750 0.95 10539 156 0.1910 0.2240 REMARK 3 11 1.8750 - 1.8160 0.93 10303 150 0.2040 0.2270 REMARK 3 12 1.8160 - 1.7640 0.87 9565 132 0.2180 0.2550 REMARK 3 13 1.7640 - 1.7180 0.76 8465 118 0.2270 0.2790 REMARK 3 14 1.7180 - 1.6760 0.63 6995 99 0.2290 0.2780 REMARK 3 15 1.6760 - 1.6380 0.51 5620 88 0.2330 0.2980 REMARK 3 16 1.6380 - 1.6030 0.39 4271 61 0.2520 0.2890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 49.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.010 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.84500 REMARK 3 B22 (A**2) : -0.98700 REMARK 3 B33 (A**2) : -7.72300 REMARK 3 B12 (A**2) : 4.10600 REMARK 3 B13 (A**2) : 2.79000 REMARK 3 B23 (A**2) : -0.65000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 7463 REMARK 3 ANGLE : 1.562 10104 REMARK 3 CHIRALITY : 0.109 1143 REMARK 3 PLANARITY : 0.009 1347 REMARK 3 DIHEDRAL : 15.883 2853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 37:201 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3223 -16.6921 81.1128 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.1632 REMARK 3 T33: 0.1555 T12: -0.0059 REMARK 3 T13: -0.0031 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.2805 L22: 0.3688 REMARK 3 L33: 0.8090 L12: 0.1796 REMARK 3 L13: -0.0279 L23: 0.0786 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0785 S13: 0.0128 REMARK 3 S21: -0.0583 S22: 0.0256 S23: -0.0283 REMARK 3 S31: -0.0389 S32: 0.0178 S33: -0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 202:228 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1670 -20.6554 107.1202 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.1538 REMARK 3 T33: 0.1586 T12: 0.0010 REMARK 3 T13: 0.0368 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.2380 L22: 1.3112 REMARK 3 L33: 0.1884 L12: -0.4011 REMARK 3 L13: -0.1610 L23: 0.4566 REMARK 3 S TENSOR REMARK 3 S11: -0.1360 S12: -0.0753 S13: -0.1327 REMARK 3 S21: 0.4873 S22: 0.0594 S23: 0.0960 REMARK 3 S31: 0.0851 S32: -0.0500 S33: 0.0783 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 229:358 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0792 7.2197 96.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1286 REMARK 3 T33: 0.2010 T12: -0.0033 REMARK 3 T13: -0.0390 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8406 L22: 0.7671 REMARK 3 L33: 0.5488 L12: 0.3852 REMARK 3 L13: 0.0996 L23: -0.1820 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.0146 S13: 0.1558 REMARK 3 S21: 0.0971 S22: -0.0338 S23: 0.0651 REMARK 3 S31: -0.1546 S32: -0.0204 S33: 0.0997 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 359:471 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9737 -51.9307 80.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1585 REMARK 3 T33: 0.1773 T12: 0.0006 REMARK 3 T13: -0.0134 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.4427 L22: 0.1161 REMARK 3 L33: 0.5227 L12: 0.0021 REMARK 3 L13: -0.3958 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.0676 S13: -0.1279 REMARK 3 S21: 0.0631 S22: -0.0449 S23: 0.0730 REMARK 3 S31: 0.1983 S32: -0.0570 S33: 0.1043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESSEQ 472:499 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8743 -22.4608 100.1109 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1875 REMARK 3 T33: 0.1993 T12: -0.0024 REMARK 3 T13: -0.0286 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0511 L22: 2.6195 REMARK 3 L33: 0.0849 L12: 0.1968 REMARK 3 L13: 0.0258 L23: 0.3650 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.0740 S13: -0.0402 REMARK 3 S21: 0.2562 S22: 0.0159 S23: -0.2798 REMARK 3 S31: 0.0568 S32: 0.1029 S33: -0.0266 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESSEQ 37:201 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2197 -17.9168 47.6085 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1485 REMARK 3 T33: 0.1267 T12: -0.0188 REMARK 3 T13: 0.0097 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.7017 L22: 0.2013 REMARK 3 L33: 1.1084 L12: 0.0194 REMARK 3 L13: 0.2196 L23: 0.2186 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: -0.1518 S13: 0.0136 REMARK 3 S21: 0.0538 S22: 0.0010 S23: 0.0168 REMARK 3 S31: 0.0977 S32: -0.0799 S33: 0.0146 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESSEQ 202:228 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5992 -19.0000 21.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.1524 REMARK 3 T33: 0.1727 T12: 0.0131 REMARK 3 T13: 0.0224 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.4776 L22: 0.1442 REMARK 3 L33: 0.5586 L12: -0.0280 REMARK 3 L13: -0.2422 L23: -0.2540 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0411 S13: 0.0100 REMARK 3 S21: -0.0628 S22: -0.0298 S23: -0.0366 REMARK 3 S31: 0.1402 S32: 0.0171 S33: 0.0145 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESSEQ 229:358 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1477 -2.0688 29.6501 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1941 REMARK 3 T33: 0.2654 T12: 0.0399 REMARK 3 T13: 0.0357 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.1336 L22: 1.2551 REMARK 3 L33: 1.2029 L12: 0.0561 REMARK 3 L13: -0.2323 L23: -0.0581 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.0777 S13: 0.2269 REMARK 3 S21: 0.0469 S22: -0.0180 S23: 0.2884 REMARK 3 S31: -0.1886 S32: -0.2640 S33: -0.0791 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESSEQ 359:471 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2685 -47.3580 51.5976 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.1889 REMARK 3 T33: 0.1660 T12: 0.0515 REMARK 3 T13: -0.0043 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1255 L22: 0.7397 REMARK 3 L33: 0.7163 L12: -0.1188 REMARK 3 L13: -0.0300 L23: -0.8752 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: 0.0285 S13: 0.0062 REMARK 3 S21: -0.1654 S22: -0.1556 S23: -0.0616 REMARK 3 S31: 0.1687 S32: 0.1873 S33: 0.0827 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESSEQ 472:499 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7205 -27.4600 29.5316 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.1498 REMARK 3 T33: 0.1538 T12: -0.0287 REMARK 3 T13: -0.0118 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.5160 L22: 0.4052 REMARK 3 L33: 0.8004 L12: -0.5797 REMARK 3 L13: 0.5735 L23: -0.3322 REMARK 3 S TENSOR REMARK 3 S11: 0.1834 S12: 0.1679 S13: -0.1004 REMARK 3 S21: -0.1695 S22: -0.1472 S23: 0.0919 REMARK 3 S31: 0.3163 S32: 0.0040 S33: -0.0140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ILW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1AB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% 2-METHYL-2,4-PENTANEDIOL, 100MM REMARK 280 TRIS 9.0, 1MM CIPROFLOXACIN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K, PH 9.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 VAL A 35 REMARK 465 ILE A 36 REMARK 465 SER B 31 REMARK 465 ASN B 32 REMARK 465 ALA B 33 REMARK 465 SER B 34 REMARK 465 VAL B 35 REMARK 465 ILE B 36 REMARK 465 VAL B 37 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 497 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 497 NH2 REMARK 480 ARG B 252 CA CB CG CD NE CZ NH1 REMARK 480 ARG B 252 NH2 REMARK 480 ARG B 354 CA CB CG CD NE CZ NH1 REMARK 480 ARG B 354 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 86 43.64 -82.76 REMARK 500 ASN A 155 -169.46 -78.52 REMARK 500 ASN A 188 83.67 -152.50 REMARK 500 ASN A 207 60.90 -105.81 REMARK 500 ALA A 231 -121.97 65.93 REMARK 500 TYR B 84 -34.66 -132.25 REMARK 500 ASN B 155 -167.86 -79.47 REMARK 500 ASN B 188 82.82 -156.97 REMARK 500 ASN B 207 59.62 -97.35 REMARK 500 ALA B 231 -122.78 64.26 REMARK 500 ASP B 293 2.39 -66.10 REMARK 500 ARG B 313 84.34 -156.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0006 RELATED DB: TARGETDB DBREF 3ILW A 34 500 UNP Q07702 GYRA_MYCTU 34 500 DBREF 3ILW B 34 500 UNP Q07702 GYRA_MYCTU 34 500 SEQADV 3ILW SER A 31 UNP Q07702 EXPRESSION TAG SEQADV 3ILW ASN A 32 UNP Q07702 EXPRESSION TAG SEQADV 3ILW ALA A 33 UNP Q07702 EXPRESSION TAG SEQADV 3ILW SER B 31 UNP Q07702 EXPRESSION TAG SEQADV 3ILW ASN B 32 UNP Q07702 EXPRESSION TAG SEQADV 3ILW ALA B 33 UNP Q07702 EXPRESSION TAG SEQRES 1 A 470 SER ASN ALA SER VAL ILE VAL GLY ARG ALA LEU PRO GLU SEQRES 2 A 470 VAL ARG ASP GLY LEU LYS PRO VAL HIS ARG ARG VAL LEU SEQRES 3 A 470 TYR ALA MET PHE ASP SER GLY PHE ARG PRO ASP ARG SER SEQRES 4 A 470 HIS ALA LYS SER ALA ARG SER VAL ALA GLU THR MET GLY SEQRES 5 A 470 ASN TYR HIS PRO HIS GLY ASP ALA SER ILE TYR ASP SER SEQRES 6 A 470 LEU VAL ARG MET ALA GLN PRO TRP SER LEU ARG TYR PRO SEQRES 7 A 470 LEU VAL ASP GLY GLN GLY ASN PHE GLY SER PRO GLY ASN SEQRES 8 A 470 ASP PRO PRO ALA ALA MET ARG TYR THR GLU ALA ARG LEU SEQRES 9 A 470 THR PRO LEU ALA MET GLU MET LEU ARG GLU ILE ASP GLU SEQRES 10 A 470 GLU THR VAL ASP PHE ILE PRO ASN TYR ASP GLY ARG VAL SEQRES 11 A 470 GLN GLU PRO THR VAL LEU PRO SER ARG PHE PRO ASN LEU SEQRES 12 A 470 LEU ALA ASN GLY SER GLY GLY ILE ALA VAL GLY MET ALA SEQRES 13 A 470 THR ASN ILE PRO PRO HIS ASN LEU ARG GLU LEU ALA ASP SEQRES 14 A 470 ALA VAL PHE TRP ALA LEU GLU ASN HIS ASP ALA ASP GLU SEQRES 15 A 470 GLU GLU THR LEU ALA ALA VAL MET GLY ARG VAL LYS GLY SEQRES 16 A 470 PRO ASP PHE PRO THR ALA GLY LEU ILE VAL GLY SER GLN SEQRES 17 A 470 GLY THR ALA ASP ALA TYR LYS THR GLY ARG GLY SER ILE SEQRES 18 A 470 ARG MET ARG GLY VAL VAL GLU VAL GLU GLU ASP SER ARG SEQRES 19 A 470 GLY ARG THR SER LEU VAL ILE THR GLU LEU PRO TYR GLN SEQRES 20 A 470 VAL ASN HIS ASP ASN PHE ILE THR SER ILE ALA GLU GLN SEQRES 21 A 470 VAL ARG ASP GLY LYS LEU ALA GLY ILE SER ASN ILE GLU SEQRES 22 A 470 ASP GLN SER SER ASP ARG VAL GLY LEU ARG ILE VAL ILE SEQRES 23 A 470 GLU ILE LYS ARG ASP ALA VAL ALA LYS VAL VAL ILE ASN SEQRES 24 A 470 ASN LEU TYR LYS HIS THR GLN LEU GLN THR SER PHE GLY SEQRES 25 A 470 ALA ASN MET LEU ALA ILE VAL ASP GLY VAL PRO ARG THR SEQRES 26 A 470 LEU ARG LEU ASP GLN LEU ILE ARG TYR TYR VAL ASP HIS SEQRES 27 A 470 GLN LEU ASP VAL ILE VAL ARG ARG THR THR TYR ARG LEU SEQRES 28 A 470 ARG LYS ALA ASN GLU ARG ALA HIS ILE LEU ARG GLY LEU SEQRES 29 A 470 VAL LYS ALA LEU ASP ALA LEU ASP GLU VAL ILE ALA LEU SEQRES 30 A 470 ILE ARG ALA SER GLU THR VAL ASP ILE ALA ARG ALA GLY SEQRES 31 A 470 LEU ILE GLU LEU LEU ASP ILE ASP GLU ILE GLN ALA GLN SEQRES 32 A 470 ALA ILE LEU ASP MET GLN LEU ARG ARG LEU ALA ALA LEU SEQRES 33 A 470 GLU ARG GLN ARG ILE ILE ASP ASP LEU ALA LYS ILE GLU SEQRES 34 A 470 ALA GLU ILE ALA ASP LEU GLU ASP ILE LEU ALA LYS PRO SEQRES 35 A 470 GLU ARG GLN ARG GLY ILE VAL ARG ASP GLU LEU ALA GLU SEQRES 36 A 470 ILE VAL ASP ARG HIS GLY ASP ASP ARG ARG THR ARG ILE SEQRES 37 A 470 ILE ALA SEQRES 1 B 470 SER ASN ALA SER VAL ILE VAL GLY ARG ALA LEU PRO GLU SEQRES 2 B 470 VAL ARG ASP GLY LEU LYS PRO VAL HIS ARG ARG VAL LEU SEQRES 3 B 470 TYR ALA MET PHE ASP SER GLY PHE ARG PRO ASP ARG SER SEQRES 4 B 470 HIS ALA LYS SER ALA ARG SER VAL ALA GLU THR MET GLY SEQRES 5 B 470 ASN TYR HIS PRO HIS GLY ASP ALA SER ILE TYR ASP SER SEQRES 6 B 470 LEU VAL ARG MET ALA GLN PRO TRP SER LEU ARG TYR PRO SEQRES 7 B 470 LEU VAL ASP GLY GLN GLY ASN PHE GLY SER PRO GLY ASN SEQRES 8 B 470 ASP PRO PRO ALA ALA MET ARG TYR THR GLU ALA ARG LEU SEQRES 9 B 470 THR PRO LEU ALA MET GLU MET LEU ARG GLU ILE ASP GLU SEQRES 10 B 470 GLU THR VAL ASP PHE ILE PRO ASN TYR ASP GLY ARG VAL SEQRES 11 B 470 GLN GLU PRO THR VAL LEU PRO SER ARG PHE PRO ASN LEU SEQRES 12 B 470 LEU ALA ASN GLY SER GLY GLY ILE ALA VAL GLY MET ALA SEQRES 13 B 470 THR ASN ILE PRO PRO HIS ASN LEU ARG GLU LEU ALA ASP SEQRES 14 B 470 ALA VAL PHE TRP ALA LEU GLU ASN HIS ASP ALA ASP GLU SEQRES 15 B 470 GLU GLU THR LEU ALA ALA VAL MET GLY ARG VAL LYS GLY SEQRES 16 B 470 PRO ASP PHE PRO THR ALA GLY LEU ILE VAL GLY SER GLN SEQRES 17 B 470 GLY THR ALA ASP ALA TYR LYS THR GLY ARG GLY SER ILE SEQRES 18 B 470 ARG MET ARG GLY VAL VAL GLU VAL GLU GLU ASP SER ARG SEQRES 19 B 470 GLY ARG THR SER LEU VAL ILE THR GLU LEU PRO TYR GLN SEQRES 20 B 470 VAL ASN HIS ASP ASN PHE ILE THR SER ILE ALA GLU GLN SEQRES 21 B 470 VAL ARG ASP GLY LYS LEU ALA GLY ILE SER ASN ILE GLU SEQRES 22 B 470 ASP GLN SER SER ASP ARG VAL GLY LEU ARG ILE VAL ILE SEQRES 23 B 470 GLU ILE LYS ARG ASP ALA VAL ALA LYS VAL VAL ILE ASN SEQRES 24 B 470 ASN LEU TYR LYS HIS THR GLN LEU GLN THR SER PHE GLY SEQRES 25 B 470 ALA ASN MET LEU ALA ILE VAL ASP GLY VAL PRO ARG THR SEQRES 26 B 470 LEU ARG LEU ASP GLN LEU ILE ARG TYR TYR VAL ASP HIS SEQRES 27 B 470 GLN LEU ASP VAL ILE VAL ARG ARG THR THR TYR ARG LEU SEQRES 28 B 470 ARG LYS ALA ASN GLU ARG ALA HIS ILE LEU ARG GLY LEU SEQRES 29 B 470 VAL LYS ALA LEU ASP ALA LEU ASP GLU VAL ILE ALA LEU SEQRES 30 B 470 ILE ARG ALA SER GLU THR VAL ASP ILE ALA ARG ALA GLY SEQRES 31 B 470 LEU ILE GLU LEU LEU ASP ILE ASP GLU ILE GLN ALA GLN SEQRES 32 B 470 ALA ILE LEU ASP MET GLN LEU ARG ARG LEU ALA ALA LEU SEQRES 33 B 470 GLU ARG GLN ARG ILE ILE ASP ASP LEU ALA LYS ILE GLU SEQRES 34 B 470 ALA GLU ILE ALA ASP LEU GLU ASP ILE LEU ALA LYS PRO SEQRES 35 B 470 GLU ARG GLN ARG GLY ILE VAL ARG ASP GLU LEU ALA GLU SEQRES 36 B 470 ILE VAL ASP ARG HIS GLY ASP ASP ARG ARG THR ARG ILE SEQRES 37 B 470 ILE ALA HET GOL A 1 6 HET GOL A 501 6 HET GOL A 502 6 HET GOL B 1 6 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 HOH *676(H2 O) HELIX 1 1 LYS A 49 GLY A 63 1 15 HELIX 2 2 SER A 73 TYR A 84 1 12 HELIX 3 3 ALA A 90 GLN A 101 1 12 HELIX 4 4 THR A 135 ARG A 143 1 9 HELIX 5 5 GLU A 144 GLU A 148 5 5 HELIX 6 6 PRO A 171 GLY A 177 1 7 HELIX 7 7 ASN A 193 ASN A 207 1 15 HELIX 8 8 ASP A 211 VAL A 223 1 13 HELIX 9 9 SER A 237 GLY A 247 1 11 HELIX 10 10 ASN A 279 ASP A 293 1 15 HELIX 11 11 VAL A 323 THR A 335 1 13 HELIX 12 12 ARG A 357 ALA A 400 1 44 HELIX 13 13 ALA A 400 SER A 411 1 12 HELIX 14 14 THR A 413 ASP A 426 1 14 HELIX 15 15 ASP A 428 ASP A 437 1 10 HELIX 16 16 GLN A 439 LEU A 443 5 5 HELIX 17 17 ALA A 444 LYS A 471 1 28 HELIX 18 18 LYS A 471 GLY A 491 1 21 HELIX 19 19 LYS B 49 SER B 62 1 14 HELIX 20 20 SER B 73 TYR B 84 1 12 HELIX 21 21 ALA B 90 ALA B 100 1 11 HELIX 22 22 THR B 135 ARG B 143 1 9 HELIX 23 23 PRO B 171 GLY B 177 1 7 HELIX 24 24 ASN B 193 ASN B 207 1 15 HELIX 25 25 ASP B 211 VAL B 223 1 13 HELIX 26 26 SER B 237 GLY B 247 1 11 HELIX 27 27 ASN B 279 ASP B 293 1 15 HELIX 28 28 VAL B 323 THR B 335 1 13 HELIX 29 29 ARG B 357 ALA B 400 1 44 HELIX 30 30 ALA B 400 SER B 411 1 12 HELIX 31 31 THR B 413 ASP B 426 1 14 HELIX 32 32 ASP B 428 ASP B 437 1 10 HELIX 33 33 GLN B 439 LEU B 443 5 5 HELIX 34 34 ALA B 444 LYS B 471 1 28 HELIX 35 35 LYS B 471 GLY B 491 1 21 SHEET 1 A 3 ALA A 71 LYS A 72 0 SHEET 2 A 3 GLU A 131 LEU A 134 -1 O ALA A 132 N ALA A 71 SHEET 3 A 3 VAL A 110 GLN A 113 -1 N ASP A 111 O ARG A 133 SHEET 1 B 2 PHE A 152 PRO A 154 0 SHEET 2 B 2 GLN A 161 PRO A 163 -1 O GLU A 162 N ILE A 153 SHEET 1 C 2 SER A 178 GLY A 179 0 SHEET 2 C 2 ASN A 188 ILE A 189 -1 O ILE A 189 N SER A 178 SHEET 1 D 4 GLN A 338 ASN A 344 0 SHEET 2 D 4 ARG A 248 ARG A 254 -1 N ILE A 251 O PHE A 341 SHEET 3 D 4 LEU A 233 VAL A 235 -1 N LEU A 233 O ARG A 254 SHEET 4 D 4 ARG A 497 ILE A 499 1 O ILE A 499 N ILE A 234 SHEET 1 E 4 VAL A 256 GLU A 261 0 SHEET 2 E 4 THR A 267 GLU A 273 -1 O VAL A 270 N GLU A 258 SHEET 3 E 4 ILE A 314 ILE A 318 -1 O ILE A 316 N LEU A 269 SHEET 4 E 4 ILE A 299 ASP A 304 -1 N GLU A 303 O VAL A 315 SHEET 1 F 2 LEU A 346 VAL A 349 0 SHEET 2 F 2 VAL A 352 THR A 355 -1 O VAL A 352 N VAL A 349 SHEET 1 G 3 ALA B 71 LYS B 72 0 SHEET 2 G 3 GLU B 131 LEU B 134 -1 O ALA B 132 N ALA B 71 SHEET 3 G 3 VAL B 110 GLN B 113 -1 N ASP B 111 O ARG B 133 SHEET 1 H 2 PHE B 152 PRO B 154 0 SHEET 2 H 2 GLN B 161 PRO B 163 -1 O GLU B 162 N ILE B 153 SHEET 1 I 2 SER B 178 GLY B 179 0 SHEET 2 I 2 ASN B 188 ILE B 189 -1 O ILE B 189 N SER B 178 SHEET 1 J 4 GLN B 338 ASN B 344 0 SHEET 2 J 4 ARG B 248 ARG B 254 -1 N ILE B 251 O PHE B 341 SHEET 3 J 4 LEU B 233 VAL B 235 -1 N LEU B 233 O ARG B 254 SHEET 4 J 4 ARG B 497 ILE B 499 1 O ILE B 499 N ILE B 234 SHEET 1 K 4 VAL B 256 GLU B 261 0 SHEET 2 K 4 THR B 267 GLU B 273 -1 O SER B 268 N GLU B 260 SHEET 3 K 4 ILE B 314 ILE B 318 -1 O ILE B 316 N LEU B 269 SHEET 4 K 4 ILE B 299 ASP B 304 -1 N GLU B 303 O VAL B 315 SHEET 1 L 2 LEU B 346 VAL B 349 0 SHEET 2 L 2 VAL B 352 THR B 355 -1 O ARG B 354 N ALA B 347 SITE 1 AC1 7 ALA A 100 PRO A 108 VAL A 110 ASP A 111 SITE 2 AC1 7 GLY A 112 THR A 135 HOH A 698 SITE 1 AC2 7 HIS A 52 ARG A 98 ASN A 172 GLY A 177 SITE 2 AC2 7 HOH A 596 HOH A 688 HOH A 755 SITE 1 AC3 7 PRO A 50 ARG A 53 ILE A 153 GLU A 162 SITE 2 AC3 7 PRO A 163 HOH A 507 HOH A 647 SITE 1 AC4 7 ALA A 78 GLU A 79 ASN A 83 ARG B 75 SITE 2 AC4 7 ALA B 78 GLU B 79 HOH B 532 SITE 1 AC5 7 ALA B 100 PRO B 108 VAL B 110 ASP B 111 SITE 2 AC5 7 GLY B 112 THR B 135 HOH B 808 SITE 1 AC6 7 LEU B 48 ASN B 172 ASN B 176 GLY B 177 SITE 2 AC6 7 HOH B 568 HOH B 672 HOH B 729 SITE 1 AC7 6 HOH A 699 ASP B 209 ALA B 210 ASP B 211 SITE 2 AC7 6 GLU B 214 HOH B 540 CRYST1 61.228 70.054 97.812 109.96 91.16 114.16 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016332 0.007327 0.003400 0.00000 SCALE2 0.000000 0.015645 0.006494 0.00000 SCALE3 0.000000 0.000000 0.011072 0.00000