data_3IM3 # _entry.id 3IM3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IM3 pdb_00003im3 10.2210/pdb3im3/pdb RCSB RCSB054581 ? ? WWPDB D_1000054581 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-04-07 4 'Structure model' 1 3 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' struct_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_entry_details 6 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 2 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 3 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IM3 _pdbx_database_status.recvd_initial_deposition_date 2009-08-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3IM4 _pdbx_database_related.details ;Crystal structure of cAMP-dependent Protein Kinase A Regulatory Subunit I alpha in complex with dual-specific A-Kinase Anchoring Protein 2 ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sarma, G.N.' 1 'Kinderman, F.S.' 2 'Kim, C.' 3 'von Daake, S.' 4 'Taylor, S.S.' 5 # _citation.id primary _citation.title 'Structure of D-AKAP2:PKA RI Complex: Insights into AKAP Specificity and Selectivity' _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 155 _citation.page_last 166 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20159461 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.12.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sarma, G.N.' 1 ? primary 'Kinderman, F.S.' 2 ? primary 'Kim, C.' 3 ? primary 'von Daake, S.' 4 ? primary 'Chen, L.' 5 ? primary 'Wang, B.C.' 6 ? primary 'Taylor, S.S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'cAMP-dependent protein kinase type I-alpha regulatory subunit' 6005.980 1 ? ? 'Dimerization and docking domain: UNP residues 13-62' ? 2 non-polymer syn 'FORMIC ACID' 46.025 2 ? ? ? ? 3 water nat water 18.015 29 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SLRECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEKEEAK _entity_poly.pdbx_seq_one_letter_code_can SLRECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEKEEAK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 ARG n 1 4 GLU n 1 5 CYS n 1 6 GLU n 1 7 LEU n 1 8 TYR n 1 9 VAL n 1 10 GLN n 1 11 LYS n 1 12 HIS n 1 13 ASN n 1 14 ILE n 1 15 GLN n 1 16 ALA n 1 17 LEU n 1 18 LEU n 1 19 LYS n 1 20 ASP n 1 21 SER n 1 22 ILE n 1 23 VAL n 1 24 GLN n 1 25 LEU n 1 26 CYS n 1 27 THR n 1 28 ALA n 1 29 ARG n 1 30 PRO n 1 31 GLU n 1 32 ARG n 1 33 PRO n 1 34 MET n 1 35 ALA n 1 36 PHE n 1 37 LEU n 1 38 ARG n 1 39 GLU n 1 40 TYR n 1 41 PHE n 1 42 GLU n 1 43 LYS n 1 44 LEU n 1 45 GLU n 1 46 LYS n 1 47 GLU n 1 48 GLU n 1 49 ALA n 1 50 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bovine _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PRKAR1A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pRSET C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 12 12 SER SER A . n A 1 2 LEU 2 13 13 LEU LEU A . n A 1 3 ARG 3 14 14 ARG ARG A . n A 1 4 GLU 4 15 15 GLU GLU A . n A 1 5 CYS 5 16 16 CYS CYS A . n A 1 6 GLU 6 17 17 GLU GLU A . n A 1 7 LEU 7 18 18 LEU LEU A . n A 1 8 TYR 8 19 19 TYR TYR A . n A 1 9 VAL 9 20 20 VAL VAL A . n A 1 10 GLN 10 21 21 GLN GLN A . n A 1 11 LYS 11 22 22 LYS LYS A . n A 1 12 HIS 12 23 23 HIS HIS A . n A 1 13 ASN 13 24 24 ASN ASN A . n A 1 14 ILE 14 25 25 ILE ILE A . n A 1 15 GLN 15 26 26 GLN GLN A . n A 1 16 ALA 16 27 27 ALA ALA A . n A 1 17 LEU 17 28 28 LEU LEU A . n A 1 18 LEU 18 29 29 LEU LEU A . n A 1 19 LYS 19 30 30 LYS LYS A . n A 1 20 ASP 20 31 31 ASP ASP A . n A 1 21 SER 21 32 32 SER SER A . n A 1 22 ILE 22 33 33 ILE ILE A . n A 1 23 VAL 23 34 34 VAL VAL A . n A 1 24 GLN 24 35 35 GLN GLN A . n A 1 25 LEU 25 36 36 LEU LEU A . n A 1 26 CYS 26 37 37 CYS CYS A . n A 1 27 THR 27 38 38 THR THR A . n A 1 28 ALA 28 39 39 ALA ALA A . n A 1 29 ARG 29 40 40 ARG ARG A . n A 1 30 PRO 30 41 41 PRO PRO A . n A 1 31 GLU 31 42 42 GLU GLU A . n A 1 32 ARG 32 43 43 ARG ARG A . n A 1 33 PRO 33 44 44 PRO PRO A . n A 1 34 MET 34 45 45 MET MET A . n A 1 35 ALA 35 46 46 ALA ALA A . n A 1 36 PHE 36 47 47 PHE PHE A . n A 1 37 LEU 37 48 48 LEU LEU A . n A 1 38 ARG 38 49 49 ARG ARG A . n A 1 39 GLU 39 50 50 GLU GLU A . n A 1 40 TYR 40 51 51 TYR TYR A . n A 1 41 PHE 41 52 52 PHE PHE A . n A 1 42 GLU 42 53 53 GLU GLU A . n A 1 43 LYS 43 54 54 LYS LYS A . n A 1 44 LEU 44 55 55 LEU LEU A . n A 1 45 GLU 45 56 56 GLU GLU A . n A 1 46 LYS 46 57 57 LYS LYS A . n A 1 47 GLU 47 58 58 GLU GLU A . n A 1 48 GLU 48 59 59 GLU GLU A . n A 1 49 ALA 49 60 60 ALA ALA A . n A 1 50 LYS 50 61 61 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT 1 81 101 FMT FMT A . C 2 FMT 1 82 102 FMT FMT A . D 3 HOH 1 101 1 HOH HOH A . D 3 HOH 2 102 2 HOH HOH A . D 3 HOH 3 103 3 HOH HOH A . D 3 HOH 4 104 4 HOH HOH A . D 3 HOH 5 105 5 HOH HOH A . D 3 HOH 6 106 6 HOH HOH A . D 3 HOH 7 107 7 HOH HOH A . D 3 HOH 8 108 8 HOH HOH A . D 3 HOH 9 109 9 HOH HOH A . D 3 HOH 10 110 10 HOH HOH A . D 3 HOH 11 111 11 HOH HOH A . D 3 HOH 12 112 12 HOH HOH A . D 3 HOH 13 113 13 HOH HOH A . D 3 HOH 14 114 14 HOH HOH A . D 3 HOH 15 115 15 HOH HOH A . D 3 HOH 16 116 16 HOH HOH A . D 3 HOH 17 117 17 HOH HOH A . D 3 HOH 18 118 18 HOH HOH A . D 3 HOH 19 119 19 HOH HOH A . D 3 HOH 20 120 20 HOH HOH A . D 3 HOH 21 121 21 HOH HOH A . D 3 HOH 22 122 22 HOH HOH A . D 3 HOH 23 123 23 HOH HOH A . D 3 HOH 24 124 24 HOH HOH A . D 3 HOH 25 125 25 HOH HOH A . D 3 HOH 26 126 26 HOH HOH A . D 3 HOH 27 127 27 HOH HOH A . D 3 HOH 28 128 28 HOH HOH A . D 3 HOH 29 129 29 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3IM3 _cell.length_a 44.122 _cell.length_b 44.122 _cell.length_c 93.036 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IM3 _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3IM3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '30% PEG 3350, 0.2 mM Sodium formate, 0.1 M Bis-Tris propane pH 9.0, MICROBATCH, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 193 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3IM3 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.00 _reflns.number_obs 4047 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 36.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 27.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3IM3 _refine.ls_number_reflns_obs 3929 _refine.ls_number_reflns_all 3929 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.0811 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 97.71 _refine.ls_R_factor_obs 0.1930 _refine.ls_R_factor_all 0.1930 _refine.ls_R_factor_R_work 0.1871 _refine.ls_R_factor_R_free 0.2488 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.85 _refine.ls_number_reflns_R_free 387 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.351 _refine.solvent_model_param_bsol 81.312 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 428 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 463 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 24.0811 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 441 'X-RAY DIFFRACTION' ? f_angle_d 0.835 ? ? 588 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.452 ? ? 178 'X-RAY DIFFRACTION' ? f_chiral_restr 0.055 ? ? 64 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 76 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.000 2.2894 1113 0.1841 96.00 0.2484 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.2894 2.8836 1147 0.1699 98.00 0.2729 . . 127 . . . . 'X-RAY DIFFRACTION' . 2.8836 24.0811 1282 0.1933 100.00 0.2384 . . 140 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3IM3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3IM3 _struct.title 'Crystal structure of PKA RI alpha dimerization/docking domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IM3 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN, SIGNALING PROTEIN' _struct_keywords.text ;helix-turn-helix, Acetylation, cAMP, cAMP-binding, Disulfide bond, Nucleotide-binding, Phosphoprotein, STRUCTURAL PROTEIN, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KAP0_BOVIN _struct_ref.pdbx_db_accession P00514 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SLRECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEKEEAK _struct_ref.pdbx_align_begin 13 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IM3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 50 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00514 _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 62 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 61 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2450 ? 1 MORE -27.0 ? 1 'SSA (A^2)' 7370 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 44.1220000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 2 ? GLN A 10 ? LEU A 13 GLN A 21 1 ? 9 HELX_P HELX_P2 2 ILE A 14 ? THR A 27 ? ILE A 25 THR A 38 1 ? 14 HELX_P HELX_P3 3 PRO A 33 ? ALA A 49 ? PRO A 44 ALA A 60 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 5 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 26 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 16 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 37 _struct_conn.ptnr2_symmetry 4_655 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.040 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 5 _pdbx_modification_feature.label_alt_id A _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 26 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 16 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 37 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 4_655 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMT 81 ? 1 'BINDING SITE FOR RESIDUE FMT A 81' AC2 Software A FMT 82 ? 7 'BINDING SITE FOR RESIDUE FMT A 82' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 LYS A 19 ? LYS A 30 . ? 8_555 ? 2 AC2 7 SER A 1 ? SER A 12 . ? 1_555 ? 3 AC2 7 LEU A 2 ? LEU A 13 . ? 1_555 ? 4 AC2 7 ARG A 3 ? ARG A 14 . ? 1_555 ? 5 AC2 7 ARG A 38 ? ARG A 49 . ? 6_555 ? 6 AC2 7 HOH D . ? HOH A 102 . ? 8_555 ? 7 AC2 7 HOH D . ? HOH A 107 . ? 1_555 ? 8 AC2 7 HOH D . ? HOH A 115 . ? 1_555 ? # _pdbx_entry_details.entry_id 3IM3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 118 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.8277 _pdbx_refine_tls.origin_y -0.4668 _pdbx_refine_tls.origin_z -11.5683 _pdbx_refine_tls.T[1][1] 0.1501 _pdbx_refine_tls.T[2][2] 0.2580 _pdbx_refine_tls.T[3][3] 0.2215 _pdbx_refine_tls.T[1][2] -0.0325 _pdbx_refine_tls.T[1][3] 0.0263 _pdbx_refine_tls.T[2][3] 0.0282 _pdbx_refine_tls.L[1][1] 0.7044 _pdbx_refine_tls.L[2][2] 2.9855 _pdbx_refine_tls.L[3][3] 1.9343 _pdbx_refine_tls.L[1][2] 0.2591 _pdbx_refine_tls.L[1][3] 0.6056 _pdbx_refine_tls.L[2][3] -0.9891 _pdbx_refine_tls.S[1][1] -0.0432 _pdbx_refine_tls.S[1][2] -0.0432 _pdbx_refine_tls.S[1][3] 0.0270 _pdbx_refine_tls.S[2][1] 0.1256 _pdbx_refine_tls.S[2][2] 0.2525 _pdbx_refine_tls.S[2][3] 0.3979 _pdbx_refine_tls.S[3][1] 0.0611 _pdbx_refine_tls.S[3][2] -0.3353 _pdbx_refine_tls.S[3][3] -0.1415 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FMT C C N N 88 FMT O1 O N N 89 FMT O2 O N N 90 FMT H H N N 91 FMT HO2 H N N 92 GLN N N N N 93 GLN CA C N S 94 GLN C C N N 95 GLN O O N N 96 GLN CB C N N 97 GLN CG C N N 98 GLN CD C N N 99 GLN OE1 O N N 100 GLN NE2 N N N 101 GLN OXT O N N 102 GLN H H N N 103 GLN H2 H N N 104 GLN HA H N N 105 GLN HB2 H N N 106 GLN HB3 H N N 107 GLN HG2 H N N 108 GLN HG3 H N N 109 GLN HE21 H N N 110 GLN HE22 H N N 111 GLN HXT H N N 112 GLU N N N N 113 GLU CA C N S 114 GLU C C N N 115 GLU O O N N 116 GLU CB C N N 117 GLU CG C N N 118 GLU CD C N N 119 GLU OE1 O N N 120 GLU OE2 O N N 121 GLU OXT O N N 122 GLU H H N N 123 GLU H2 H N N 124 GLU HA H N N 125 GLU HB2 H N N 126 GLU HB3 H N N 127 GLU HG2 H N N 128 GLU HG3 H N N 129 GLU HE2 H N N 130 GLU HXT H N N 131 HIS N N N N 132 HIS CA C N S 133 HIS C C N N 134 HIS O O N N 135 HIS CB C N N 136 HIS CG C Y N 137 HIS ND1 N Y N 138 HIS CD2 C Y N 139 HIS CE1 C Y N 140 HIS NE2 N Y N 141 HIS OXT O N N 142 HIS H H N N 143 HIS H2 H N N 144 HIS HA H N N 145 HIS HB2 H N N 146 HIS HB3 H N N 147 HIS HD1 H N N 148 HIS HD2 H N N 149 HIS HE1 H N N 150 HIS HE2 H N N 151 HIS HXT H N N 152 HOH O O N N 153 HOH H1 H N N 154 HOH H2 H N N 155 ILE N N N N 156 ILE CA C N S 157 ILE C C N N 158 ILE O O N N 159 ILE CB C N S 160 ILE CG1 C N N 161 ILE CG2 C N N 162 ILE CD1 C N N 163 ILE OXT O N N 164 ILE H H N N 165 ILE H2 H N N 166 ILE HA H N N 167 ILE HB H N N 168 ILE HG12 H N N 169 ILE HG13 H N N 170 ILE HG21 H N N 171 ILE HG22 H N N 172 ILE HG23 H N N 173 ILE HD11 H N N 174 ILE HD12 H N N 175 ILE HD13 H N N 176 ILE HXT H N N 177 LEU N N N N 178 LEU CA C N S 179 LEU C C N N 180 LEU O O N N 181 LEU CB C N N 182 LEU CG C N N 183 LEU CD1 C N N 184 LEU CD2 C N N 185 LEU OXT O N N 186 LEU H H N N 187 LEU H2 H N N 188 LEU HA H N N 189 LEU HB2 H N N 190 LEU HB3 H N N 191 LEU HG H N N 192 LEU HD11 H N N 193 LEU HD12 H N N 194 LEU HD13 H N N 195 LEU HD21 H N N 196 LEU HD22 H N N 197 LEU HD23 H N N 198 LEU HXT H N N 199 LYS N N N N 200 LYS CA C N S 201 LYS C C N N 202 LYS O O N N 203 LYS CB C N N 204 LYS CG C N N 205 LYS CD C N N 206 LYS CE C N N 207 LYS NZ N N N 208 LYS OXT O N N 209 LYS H H N N 210 LYS H2 H N N 211 LYS HA H N N 212 LYS HB2 H N N 213 LYS HB3 H N N 214 LYS HG2 H N N 215 LYS HG3 H N N 216 LYS HD2 H N N 217 LYS HD3 H N N 218 LYS HE2 H N N 219 LYS HE3 H N N 220 LYS HZ1 H N N 221 LYS HZ2 H N N 222 LYS HZ3 H N N 223 LYS HXT H N N 224 MET N N N N 225 MET CA C N S 226 MET C C N N 227 MET O O N N 228 MET CB C N N 229 MET CG C N N 230 MET SD S N N 231 MET CE C N N 232 MET OXT O N N 233 MET H H N N 234 MET H2 H N N 235 MET HA H N N 236 MET HB2 H N N 237 MET HB3 H N N 238 MET HG2 H N N 239 MET HG3 H N N 240 MET HE1 H N N 241 MET HE2 H N N 242 MET HE3 H N N 243 MET HXT H N N 244 PHE N N N N 245 PHE CA C N S 246 PHE C C N N 247 PHE O O N N 248 PHE CB C N N 249 PHE CG C Y N 250 PHE CD1 C Y N 251 PHE CD2 C Y N 252 PHE CE1 C Y N 253 PHE CE2 C Y N 254 PHE CZ C Y N 255 PHE OXT O N N 256 PHE H H N N 257 PHE H2 H N N 258 PHE HA H N N 259 PHE HB2 H N N 260 PHE HB3 H N N 261 PHE HD1 H N N 262 PHE HD2 H N N 263 PHE HE1 H N N 264 PHE HE2 H N N 265 PHE HZ H N N 266 PHE HXT H N N 267 PRO N N N N 268 PRO CA C N S 269 PRO C C N N 270 PRO O O N N 271 PRO CB C N N 272 PRO CG C N N 273 PRO CD C N N 274 PRO OXT O N N 275 PRO H H N N 276 PRO HA H N N 277 PRO HB2 H N N 278 PRO HB3 H N N 279 PRO HG2 H N N 280 PRO HG3 H N N 281 PRO HD2 H N N 282 PRO HD3 H N N 283 PRO HXT H N N 284 SER N N N N 285 SER CA C N S 286 SER C C N N 287 SER O O N N 288 SER CB C N N 289 SER OG O N N 290 SER OXT O N N 291 SER H H N N 292 SER H2 H N N 293 SER HA H N N 294 SER HB2 H N N 295 SER HB3 H N N 296 SER HG H N N 297 SER HXT H N N 298 THR N N N N 299 THR CA C N S 300 THR C C N N 301 THR O O N N 302 THR CB C N R 303 THR OG1 O N N 304 THR CG2 C N N 305 THR OXT O N N 306 THR H H N N 307 THR H2 H N N 308 THR HA H N N 309 THR HB H N N 310 THR HG1 H N N 311 THR HG21 H N N 312 THR HG22 H N N 313 THR HG23 H N N 314 THR HXT H N N 315 TYR N N N N 316 TYR CA C N S 317 TYR C C N N 318 TYR O O N N 319 TYR CB C N N 320 TYR CG C Y N 321 TYR CD1 C Y N 322 TYR CD2 C Y N 323 TYR CE1 C Y N 324 TYR CE2 C Y N 325 TYR CZ C Y N 326 TYR OH O N N 327 TYR OXT O N N 328 TYR H H N N 329 TYR H2 H N N 330 TYR HA H N N 331 TYR HB2 H N N 332 TYR HB3 H N N 333 TYR HD1 H N N 334 TYR HD2 H N N 335 TYR HE1 H N N 336 TYR HE2 H N N 337 TYR HH H N N 338 TYR HXT H N N 339 VAL N N N N 340 VAL CA C N S 341 VAL C C N N 342 VAL O O N N 343 VAL CB C N N 344 VAL CG1 C N N 345 VAL CG2 C N N 346 VAL OXT O N N 347 VAL H H N N 348 VAL H2 H N N 349 VAL HA H N N 350 VAL HB H N N 351 VAL HG11 H N N 352 VAL HG12 H N N 353 VAL HG13 H N N 354 VAL HG21 H N N 355 VAL HG22 H N N 356 VAL HG23 H N N 357 VAL HXT H N N 358 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FMT C O1 doub N N 83 FMT C O2 sing N N 84 FMT C H sing N N 85 FMT O2 HO2 sing N N 86 GLN N CA sing N N 87 GLN N H sing N N 88 GLN N H2 sing N N 89 GLN CA C sing N N 90 GLN CA CB sing N N 91 GLN CA HA sing N N 92 GLN C O doub N N 93 GLN C OXT sing N N 94 GLN CB CG sing N N 95 GLN CB HB2 sing N N 96 GLN CB HB3 sing N N 97 GLN CG CD sing N N 98 GLN CG HG2 sing N N 99 GLN CG HG3 sing N N 100 GLN CD OE1 doub N N 101 GLN CD NE2 sing N N 102 GLN NE2 HE21 sing N N 103 GLN NE2 HE22 sing N N 104 GLN OXT HXT sing N N 105 GLU N CA sing N N 106 GLU N H sing N N 107 GLU N H2 sing N N 108 GLU CA C sing N N 109 GLU CA CB sing N N 110 GLU CA HA sing N N 111 GLU C O doub N N 112 GLU C OXT sing N N 113 GLU CB CG sing N N 114 GLU CB HB2 sing N N 115 GLU CB HB3 sing N N 116 GLU CG CD sing N N 117 GLU CG HG2 sing N N 118 GLU CG HG3 sing N N 119 GLU CD OE1 doub N N 120 GLU CD OE2 sing N N 121 GLU OE2 HE2 sing N N 122 GLU OXT HXT sing N N 123 HIS N CA sing N N 124 HIS N H sing N N 125 HIS N H2 sing N N 126 HIS CA C sing N N 127 HIS CA CB sing N N 128 HIS CA HA sing N N 129 HIS C O doub N N 130 HIS C OXT sing N N 131 HIS CB CG sing N N 132 HIS CB HB2 sing N N 133 HIS CB HB3 sing N N 134 HIS CG ND1 sing Y N 135 HIS CG CD2 doub Y N 136 HIS ND1 CE1 doub Y N 137 HIS ND1 HD1 sing N N 138 HIS CD2 NE2 sing Y N 139 HIS CD2 HD2 sing N N 140 HIS CE1 NE2 sing Y N 141 HIS CE1 HE1 sing N N 142 HIS NE2 HE2 sing N N 143 HIS OXT HXT sing N N 144 HOH O H1 sing N N 145 HOH O H2 sing N N 146 ILE N CA sing N N 147 ILE N H sing N N 148 ILE N H2 sing N N 149 ILE CA C sing N N 150 ILE CA CB sing N N 151 ILE CA HA sing N N 152 ILE C O doub N N 153 ILE C OXT sing N N 154 ILE CB CG1 sing N N 155 ILE CB CG2 sing N N 156 ILE CB HB sing N N 157 ILE CG1 CD1 sing N N 158 ILE CG1 HG12 sing N N 159 ILE CG1 HG13 sing N N 160 ILE CG2 HG21 sing N N 161 ILE CG2 HG22 sing N N 162 ILE CG2 HG23 sing N N 163 ILE CD1 HD11 sing N N 164 ILE CD1 HD12 sing N N 165 ILE CD1 HD13 sing N N 166 ILE OXT HXT sing N N 167 LEU N CA sing N N 168 LEU N H sing N N 169 LEU N H2 sing N N 170 LEU CA C sing N N 171 LEU CA CB sing N N 172 LEU CA HA sing N N 173 LEU C O doub N N 174 LEU C OXT sing N N 175 LEU CB CG sing N N 176 LEU CB HB2 sing N N 177 LEU CB HB3 sing N N 178 LEU CG CD1 sing N N 179 LEU CG CD2 sing N N 180 LEU CG HG sing N N 181 LEU CD1 HD11 sing N N 182 LEU CD1 HD12 sing N N 183 LEU CD1 HD13 sing N N 184 LEU CD2 HD21 sing N N 185 LEU CD2 HD22 sing N N 186 LEU CD2 HD23 sing N N 187 LEU OXT HXT sing N N 188 LYS N CA sing N N 189 LYS N H sing N N 190 LYS N H2 sing N N 191 LYS CA C sing N N 192 LYS CA CB sing N N 193 LYS CA HA sing N N 194 LYS C O doub N N 195 LYS C OXT sing N N 196 LYS CB CG sing N N 197 LYS CB HB2 sing N N 198 LYS CB HB3 sing N N 199 LYS CG CD sing N N 200 LYS CG HG2 sing N N 201 LYS CG HG3 sing N N 202 LYS CD CE sing N N 203 LYS CD HD2 sing N N 204 LYS CD HD3 sing N N 205 LYS CE NZ sing N N 206 LYS CE HE2 sing N N 207 LYS CE HE3 sing N N 208 LYS NZ HZ1 sing N N 209 LYS NZ HZ2 sing N N 210 LYS NZ HZ3 sing N N 211 LYS OXT HXT sing N N 212 MET N CA sing N N 213 MET N H sing N N 214 MET N H2 sing N N 215 MET CA C sing N N 216 MET CA CB sing N N 217 MET CA HA sing N N 218 MET C O doub N N 219 MET C OXT sing N N 220 MET CB CG sing N N 221 MET CB HB2 sing N N 222 MET CB HB3 sing N N 223 MET CG SD sing N N 224 MET CG HG2 sing N N 225 MET CG HG3 sing N N 226 MET SD CE sing N N 227 MET CE HE1 sing N N 228 MET CE HE2 sing N N 229 MET CE HE3 sing N N 230 MET OXT HXT sing N N 231 PHE N CA sing N N 232 PHE N H sing N N 233 PHE N H2 sing N N 234 PHE CA C sing N N 235 PHE CA CB sing N N 236 PHE CA HA sing N N 237 PHE C O doub N N 238 PHE C OXT sing N N 239 PHE CB CG sing N N 240 PHE CB HB2 sing N N 241 PHE CB HB3 sing N N 242 PHE CG CD1 doub Y N 243 PHE CG CD2 sing Y N 244 PHE CD1 CE1 sing Y N 245 PHE CD1 HD1 sing N N 246 PHE CD2 CE2 doub Y N 247 PHE CD2 HD2 sing N N 248 PHE CE1 CZ doub Y N 249 PHE CE1 HE1 sing N N 250 PHE CE2 CZ sing Y N 251 PHE CE2 HE2 sing N N 252 PHE CZ HZ sing N N 253 PHE OXT HXT sing N N 254 PRO N CA sing N N 255 PRO N CD sing N N 256 PRO N H sing N N 257 PRO CA C sing N N 258 PRO CA CB sing N N 259 PRO CA HA sing N N 260 PRO C O doub N N 261 PRO C OXT sing N N 262 PRO CB CG sing N N 263 PRO CB HB2 sing N N 264 PRO CB HB3 sing N N 265 PRO CG CD sing N N 266 PRO CG HG2 sing N N 267 PRO CG HG3 sing N N 268 PRO CD HD2 sing N N 269 PRO CD HD3 sing N N 270 PRO OXT HXT sing N N 271 SER N CA sing N N 272 SER N H sing N N 273 SER N H2 sing N N 274 SER CA C sing N N 275 SER CA CB sing N N 276 SER CA HA sing N N 277 SER C O doub N N 278 SER C OXT sing N N 279 SER CB OG sing N N 280 SER CB HB2 sing N N 281 SER CB HB3 sing N N 282 SER OG HG sing N N 283 SER OXT HXT sing N N 284 THR N CA sing N N 285 THR N H sing N N 286 THR N H2 sing N N 287 THR CA C sing N N 288 THR CA CB sing N N 289 THR CA HA sing N N 290 THR C O doub N N 291 THR C OXT sing N N 292 THR CB OG1 sing N N 293 THR CB CG2 sing N N 294 THR CB HB sing N N 295 THR OG1 HG1 sing N N 296 THR CG2 HG21 sing N N 297 THR CG2 HG22 sing N N 298 THR CG2 HG23 sing N N 299 THR OXT HXT sing N N 300 TYR N CA sing N N 301 TYR N H sing N N 302 TYR N H2 sing N N 303 TYR CA C sing N N 304 TYR CA CB sing N N 305 TYR CA HA sing N N 306 TYR C O doub N N 307 TYR C OXT sing N N 308 TYR CB CG sing N N 309 TYR CB HB2 sing N N 310 TYR CB HB3 sing N N 311 TYR CG CD1 doub Y N 312 TYR CG CD2 sing Y N 313 TYR CD1 CE1 sing Y N 314 TYR CD1 HD1 sing N N 315 TYR CD2 CE2 doub Y N 316 TYR CD2 HD2 sing N N 317 TYR CE1 CZ doub Y N 318 TYR CE1 HE1 sing N N 319 TYR CE2 CZ sing Y N 320 TYR CE2 HE2 sing N N 321 TYR CZ OH sing N N 322 TYR OH HH sing N N 323 TYR OXT HXT sing N N 324 VAL N CA sing N N 325 VAL N H sing N N 326 VAL N H2 sing N N 327 VAL CA C sing N N 328 VAL CA CB sing N N 329 VAL CA HA sing N N 330 VAL C O doub N N 331 VAL C OXT sing N N 332 VAL CB CG1 sing N N 333 VAL CB CG2 sing N N 334 VAL CB HB sing N N 335 VAL CG1 HG11 sing N N 336 VAL CG1 HG12 sing N N 337 VAL CG1 HG13 sing N N 338 VAL CG2 HG21 sing N N 339 VAL CG2 HG22 sing N N 340 VAL CG2 HG23 sing N N 341 VAL OXT HXT sing N N 342 # _atom_sites.entry_id 3IM3 _atom_sites.fract_transf_matrix[1][1] 0.022664 _atom_sites.fract_transf_matrix[1][2] 0.013085 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026171 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010749 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_