HEADER LIGASE 10-AUG-09 3IMC TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE TITLE 2 SYNTHETASE AT 1.6 ANG RESOLUTION IN COMPLEX WITH FRAGMENT COMPOUND 5- TITLE 3 METHOXYINDOLE, SULFATE AND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-300; COMPND 5 SYNONYM: PS, PANTOATE-BETA-ALANINE LIGASE, PANTOATE-ACTIVATING COMPND 6 ENZYME; COMPND 7 EC: 6.3.2.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MT3707, MTCY07H7B.20, PANC, RV3602C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS MYCOBACTERIUM TUBERCULOSIS, PANTOTHENATE BIOSYNTHESIS, ENZYMES, KEYWDS 2 LIGASE, DRUG DESIGN, FRAGMENT-BASED, ATP-BINDING, MAGNESIUM, METAL- KEYWDS 3 BINDING, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.CIULLI,A.W.HUNG,H.L.SILVESTRE,S.WEN,T.L.BLUNDELL,C.ABELL REVDAT 5 06-SEP-23 3IMC 1 REMARK REVDAT 4 13-OCT-21 3IMC 1 REMARK SEQADV REVDAT 3 13-JUL-11 3IMC 1 VERSN REVDAT 2 10-NOV-09 3IMC 1 JRNL REVDAT 1 13-OCT-09 3IMC 0 JRNL AUTH A.W.HUNG,H.L.SILVESTRE,S.WEN,A.CIULLI,T.L.BLUNDELL,C.ABELL JRNL TITL APPLICATION OF FRAGMENT GROWING AND FRAGMENT LINKING TO THE JRNL TITL 2 DISCOVERY OF INHIBITORS OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 3 PANTOTHENATE SYNTHETASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 48 8452 2009 JRNL REFN ISSN 1433-7851 JRNL PMID 19780086 JRNL DOI 10.1002/ANIE.200903821 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 66631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3547 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4296 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5863 ; 1.263 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 565 ; 5.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;36.793 ;22.560 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;12.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;15.668 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 696 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3260 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2027 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2998 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 414 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 101 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2862 ; 2.081 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4501 ; 2.865 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1551 ; 2.881 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1360 ; 4.408 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3COV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-14% W/V PEG3000, 100-150 MM LITHIUM REMARK 280 SULFATE, 100 MM IMIDAZOLE, PH 8.0, 2-4% V/V ETHANOL, 10% V/V REMARK 280 GLYCEROL AND 20 MM MAGNESIUM CHLORIDE., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.45000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 13.11480 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -80.79450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 291 REMARK 465 GLY A 292 REMARK 465 THR A 293 REMARK 465 ASP A 294 REMARK 465 ARG A 295 REMARK 465 PRO A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 TYR A 299 REMARK 465 ARG A 300 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 PHE B 73 REMARK 465 GLY B 74 REMARK 465 ALA B 75 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 ASP B 78 REMARK 465 LEU B 79 REMARK 465 ASP B 80 REMARK 465 ALA B 81 REMARK 465 TYR B 82 REMARK 465 PRO B 83 REMARK 465 ARG B 84 REMARK 465 THR B 289 REMARK 465 PHE B 290 REMARK 465 ALA B 291 REMARK 465 GLY B 292 REMARK 465 THR B 293 REMARK 465 ASP B 294 REMARK 465 ARG B 295 REMARK 465 PRO B 296 REMARK 465 ASP B 297 REMARK 465 GLY B 298 REMARK 465 TYR B 299 REMARK 465 ARG B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 151 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 262 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 263 O HOH A 529 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 115 -98.07 -117.86 REMARK 500 LEU A 127 -115.01 52.89 REMARK 500 LEU A 257 10.97 57.57 REMARK 500 ARG B 115 -95.42 -133.37 REMARK 500 LEU B 127 -111.44 53.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BZ3 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BZ3 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 708 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3COV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE REMARK 900 SYNTHETASE AT 1.5 ANG RESOLUTION- APO FORM REMARK 900 RELATED ID: 3IME RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE REMARK 900 SYNTHETASE AT 2.40 ANG RESOLUTION IN COMPLEX WITH FRAGMENT COMPOUND REMARK 900 1-BENZOFURAN-2-CARBOXYLIC ACID REMARK 900 RELATED ID: 3IMG RELATED DB: PDB REMARK 900 SAME PROTEIN AT 1.8 ANG RESOLUTION IN A TERNARY COMPLEX WITH REMARK 900 FRAGMENT COMPOUNDS 5-METHOXYINDOLE AND 1-BENZOFURAN-2-CARBOXYLIC REMARK 900 ACID DBREF 3IMC A 1 300 UNP P0A5R0 PANC_MYCTU 1 300 DBREF 3IMC B 1 300 UNP P0A5R0 PANC_MYCTU 1 300 SEQADV 3IMC ALA A 0 UNP P0A5R0 EXPRESSION TAG SEQADV 3IMC ALA A 2 UNP P0A5R0 THR 2 ENGINEERED MUTATION SEQADV 3IMC GLY A 77 UNP P0A5R0 GLU 77 ENGINEERED MUTATION SEQADV 3IMC ALA B 0 UNP P0A5R0 EXPRESSION TAG SEQADV 3IMC ALA B 2 UNP P0A5R0 THR 2 ENGINEERED MUTATION SEQADV 3IMC GLY B 77 UNP P0A5R0 GLU 77 ENGINEERED MUTATION SEQRES 1 A 301 ALA MET ALA ILE PRO ALA PHE HIS PRO GLY GLU LEU ASN SEQRES 2 A 301 VAL TYR SER ALA PRO GLY ASP VAL ALA ASP VAL SER ARG SEQRES 3 A 301 ALA LEU ARG LEU THR GLY ARG ARG VAL MET LEU VAL PRO SEQRES 4 A 301 THR MET GLY ALA LEU HIS GLU GLY HIS LEU ALA LEU VAL SEQRES 5 A 301 ARG ALA ALA LYS ARG VAL PRO GLY SER VAL VAL VAL VAL SEQRES 6 A 301 SER ILE PHE VAL ASN PRO MET GLN PHE GLY ALA GLY GLY SEQRES 7 A 301 ASP LEU ASP ALA TYR PRO ARG THR PRO ASP ASP ASP LEU SEQRES 8 A 301 ALA GLN LEU ARG ALA GLU GLY VAL GLU ILE ALA PHE THR SEQRES 9 A 301 PRO THR THR ALA ALA MET TYR PRO ASP GLY LEU ARG THR SEQRES 10 A 301 THR VAL GLN PRO GLY PRO LEU ALA ALA GLU LEU GLU GLY SEQRES 11 A 301 GLY PRO ARG PRO THR HIS PHE ALA GLY VAL LEU THR VAL SEQRES 12 A 301 VAL LEU LYS LEU LEU GLN ILE VAL ARG PRO ASP ARG VAL SEQRES 13 A 301 PHE PHE GLY GLU LYS ASP TYR GLN GLN LEU VAL LEU ILE SEQRES 14 A 301 ARG GLN LEU VAL ALA ASP PHE ASN LEU ASP VAL ALA VAL SEQRES 15 A 301 VAL GLY VAL PRO THR VAL ARG GLU ALA ASP GLY LEU ALA SEQRES 16 A 301 MET SER SER ARG ASN ARG TYR LEU ASP PRO ALA GLN ARG SEQRES 17 A 301 ALA ALA ALA VAL ALA LEU SER ALA ALA LEU THR ALA ALA SEQRES 18 A 301 ALA HIS ALA ALA THR ALA GLY ALA GLN ALA ALA LEU ASP SEQRES 19 A 301 ALA ALA ARG ALA VAL LEU ASP ALA ALA PRO GLY VAL ALA SEQRES 20 A 301 VAL ASP TYR LEU GLU LEU ARG ASP ILE GLY LEU GLY PRO SEQRES 21 A 301 MET PRO LEU ASN GLY SER GLY ARG LEU LEU VAL ALA ALA SEQRES 22 A 301 ARG LEU GLY THR THR ARG LEU LEU ASP ASN ILE ALA ILE SEQRES 23 A 301 GLU ILE GLY THR PHE ALA GLY THR ASP ARG PRO ASP GLY SEQRES 24 A 301 TYR ARG SEQRES 1 B 301 ALA MET ALA ILE PRO ALA PHE HIS PRO GLY GLU LEU ASN SEQRES 2 B 301 VAL TYR SER ALA PRO GLY ASP VAL ALA ASP VAL SER ARG SEQRES 3 B 301 ALA LEU ARG LEU THR GLY ARG ARG VAL MET LEU VAL PRO SEQRES 4 B 301 THR MET GLY ALA LEU HIS GLU GLY HIS LEU ALA LEU VAL SEQRES 5 B 301 ARG ALA ALA LYS ARG VAL PRO GLY SER VAL VAL VAL VAL SEQRES 6 B 301 SER ILE PHE VAL ASN PRO MET GLN PHE GLY ALA GLY GLY SEQRES 7 B 301 ASP LEU ASP ALA TYR PRO ARG THR PRO ASP ASP ASP LEU SEQRES 8 B 301 ALA GLN LEU ARG ALA GLU GLY VAL GLU ILE ALA PHE THR SEQRES 9 B 301 PRO THR THR ALA ALA MET TYR PRO ASP GLY LEU ARG THR SEQRES 10 B 301 THR VAL GLN PRO GLY PRO LEU ALA ALA GLU LEU GLU GLY SEQRES 11 B 301 GLY PRO ARG PRO THR HIS PHE ALA GLY VAL LEU THR VAL SEQRES 12 B 301 VAL LEU LYS LEU LEU GLN ILE VAL ARG PRO ASP ARG VAL SEQRES 13 B 301 PHE PHE GLY GLU LYS ASP TYR GLN GLN LEU VAL LEU ILE SEQRES 14 B 301 ARG GLN LEU VAL ALA ASP PHE ASN LEU ASP VAL ALA VAL SEQRES 15 B 301 VAL GLY VAL PRO THR VAL ARG GLU ALA ASP GLY LEU ALA SEQRES 16 B 301 MET SER SER ARG ASN ARG TYR LEU ASP PRO ALA GLN ARG SEQRES 17 B 301 ALA ALA ALA VAL ALA LEU SER ALA ALA LEU THR ALA ALA SEQRES 18 B 301 ALA HIS ALA ALA THR ALA GLY ALA GLN ALA ALA LEU ASP SEQRES 19 B 301 ALA ALA ARG ALA VAL LEU ASP ALA ALA PRO GLY VAL ALA SEQRES 20 B 301 VAL ASP TYR LEU GLU LEU ARG ASP ILE GLY LEU GLY PRO SEQRES 21 B 301 MET PRO LEU ASN GLY SER GLY ARG LEU LEU VAL ALA ALA SEQRES 22 B 301 ARG LEU GLY THR THR ARG LEU LEU ASP ASN ILE ALA ILE SEQRES 23 B 301 GLU ILE GLY THR PHE ALA GLY THR ASP ARG PRO ASP GLY SEQRES 24 B 301 TYR ARG HET BZ3 A 702 11 HET SO4 A 703 5 HET SO4 A 706 5 HET GOL A 707 6 HET GOL A 709 6 HET EOH A 710 3 HET EOH A 711 3 HET EOH A 712 3 HET BZ3 B 701 11 HET SO4 B 704 5 HET SO4 B 705 5 HET GOL B 708 6 HETNAM BZ3 5-METHOXY-1H-INDOLE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EOH ETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BZ3 2(C9 H9 N O) FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 8 EOH 3(C2 H6 O) FORMUL 15 HOH *593(H2 O) HELIX 1 1 ALA A 16 THR A 30 1 15 HELIX 2 2 HIS A 44 ARG A 56 1 13 HELIX 3 3 ASN A 69 PHE A 73 5 5 HELIX 4 4 GLY A 77 TYR A 82 1 6 HELIX 5 5 THR A 85 GLU A 96 1 12 HELIX 6 6 THR A 105 TYR A 110 1 6 HELIX 7 7 GLY A 121 GLY A 130 5 10 HELIX 8 8 THR A 134 ARG A 151 1 18 HELIX 9 9 ASP A 161 PHE A 175 1 15 HELIX 10 10 ARG A 198 LEU A 202 5 5 HELIX 11 11 ASP A 203 ALA A 210 1 8 HELIX 12 12 VAL A 211 ALA A 224 1 14 HELIX 13 13 GLY A 227 ALA A 241 1 15 HELIX 14 14 ALA B 16 THR B 30 1 15 HELIX 15 15 HIS B 44 ARG B 56 1 13 HELIX 16 16 THR B 85 GLU B 96 1 12 HELIX 17 17 THR B 105 TYR B 110 1 6 HELIX 18 18 GLY B 121 GLY B 130 5 10 HELIX 19 19 THR B 134 ARG B 151 1 18 HELIX 20 20 ASP B 161 PHE B 175 1 15 HELIX 21 21 ARG B 198 LEU B 202 5 5 HELIX 22 22 ASP B 203 VAL B 211 1 9 HELIX 23 23 VAL B 211 ALA B 224 1 14 HELIX 24 24 GLY B 227 ALA B 241 1 15 SHEET 1 A 6 ASN A 12 TYR A 14 0 SHEET 2 A 6 ILE A 100 PHE A 102 1 O ALA A 101 N ASN A 12 SHEET 3 A 6 SER A 60 ILE A 66 1 N ILE A 66 O PHE A 102 SHEET 4 A 6 ARG A 33 THR A 39 1 N MET A 35 O VAL A 63 SHEET 5 A 6 ARG A 154 GLY A 158 1 O PHE A 156 N LEU A 36 SHEET 6 A 6 ALA A 180 VAL A 184 1 O VAL A 182 N VAL A 155 SHEET 1 B 2 THR A 117 GLN A 119 0 SHEET 2 B 2 THR B 117 GLN B 119 -1 O THR B 117 N GLN A 119 SHEET 1 C 3 ALA A 246 ASP A 254 0 SHEET 2 C 3 SER A 265 LEU A 274 -1 O LEU A 269 N GLU A 251 SHEET 3 C 3 THR A 277 GLU A 286 -1 O LEU A 279 N ALA A 272 SHEET 1 D 6 ASN B 12 TYR B 14 0 SHEET 2 D 6 ILE B 100 PHE B 102 1 O ALA B 101 N TYR B 14 SHEET 3 D 6 SER B 60 ILE B 66 1 N ILE B 66 O PHE B 102 SHEET 4 D 6 ARG B 33 THR B 39 1 N MET B 35 O VAL B 63 SHEET 5 D 6 ARG B 154 GLY B 158 1 O PHE B 156 N LEU B 36 SHEET 6 D 6 ALA B 180 VAL B 184 1 O VAL B 182 N VAL B 155 SHEET 1 E 3 ALA B 246 ASP B 254 0 SHEET 2 E 3 GLY B 264 LEU B 274 -1 O ARG B 267 N ARG B 253 SHEET 3 E 3 THR B 277 ILE B 287 -1 O ILE B 285 N GLY B 266 CISPEP 1 GLY A 76 GLY A 77 0 0.82 SITE 1 AC1 11 HIS A 44 GLY A 46 HIS A 47 GLY A 158 SITE 2 AC1 11 LYS A 160 VAL A 184 PRO A 185 THR A 186 SITE 3 AC1 11 VAL A 187 MET A 195 SO4 A 703 SITE 1 AC2 9 HIS A 44 HIS A 47 LYS A 160 SER A 196 SITE 2 AC2 9 SER A 197 ARG A 198 HOH A 594 BZ3 A 702 SITE 3 AC2 9 HOH A 860 SITE 1 AC3 4 ARG A 56 PRO A 58 ARG A 154 HOH A 426 SITE 1 AC4 5 GLN A 72 VAL A 139 VAL A 142 GLN A 164 SITE 2 AC4 5 HOH A 518 SITE 1 AC5 9 MET A 109 TYR A 110 PRO A 111 ASP A 112 SITE 2 AC5 9 GLY A 113 ARG A 115 THR A 116 LYS A 145 SITE 3 AC5 9 ASP B 174 SITE 1 AC6 6 LEU A 114 ARG A 115 THR A 117 HOH A 738 SITE 2 AC6 6 GLN B 119 PRO B 120 SITE 1 AC7 2 PRO A 111 ASP A 112 SITE 1 AC8 2 MET A 71 LEU A 114 SITE 1 AC9 7 HIS B 44 GLY B 46 PRO B 185 THR B 186 SITE 2 AC9 7 VAL B 187 MET B 195 SO4 B 704 SITE 1 BC1 6 HIS B 44 LYS B 160 SER B 196 SER B 197 SITE 2 BC1 6 HOH B 596 BZ3 B 701 SITE 1 BC2 2 ARG B 200 HOH B 490 SITE 1 BC3 6 PRO B 38 GLN B 72 VAL B 142 GLN B 164 SITE 2 BC3 6 HOH B 706 HOH B 933 CRYST1 48.234 70.900 81.852 90.00 99.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020732 0.000000 0.003364 0.00000 SCALE2 0.000000 0.014104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012377 0.00000