HEADER FLAVOPROTEIN 11-AUG-09 3IN6 TITLE CRYSTAL STRUCTURE OF A FMN-BINDING PROTEIN (SWOL_0183) FROM TITLE 2 SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI AT 2.12 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI; SOURCE 3 ORGANISM_TAXID: 335541; SOURCE 4 STRAIN: GOETTINGEN; SOURCE 5 GENE: SWOL_0183, YP_752906.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3IN6 1 REMARK SEQADV REVDAT 5 24-JUL-19 3IN6 1 REMARK LINK REVDAT 4 25-OCT-17 3IN6 1 REMARK REVDAT 3 13-JUL-11 3IN6 1 VERSN REVDAT 2 23-MAR-11 3IN6 1 HEADER TITLE KEYWDS REVDAT 1 25-AUG-09 3IN6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF FMN-BINDING PROTEIN (YP_752906.1) FROM JRNL TITL 2 SYNTROPHOMONAS WOLFEI STR. GOETTINGEN AT 2.12 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.90000 REMARK 3 B22 (A**2) : -2.90000 REMARK 3 B33 (A**2) : 5.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2397 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1572 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3254 ; 1.431 ; 2.017 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3853 ; 0.842 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 3.483 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;23.961 ;24.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;11.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2586 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 1.301 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 597 ; 0.342 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2362 ; 2.359 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 938 ; 4.443 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 891 ; 6.174 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 146 6 REMARK 3 1 B 5 B 146 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1810 ; 0.710 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1810 ; 3.080 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1294 -37.4722 12.1492 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1593 REMARK 3 T33: 0.0067 T12: 0.0179 REMARK 3 T13: 0.0264 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.4832 L22: 3.4761 REMARK 3 L33: 0.2637 L12: -1.6385 REMARK 3 L13: 0.9429 L23: -0.5005 REMARK 3 S TENSOR REMARK 3 S11: -0.1410 S12: -0.4762 S13: -0.0550 REMARK 3 S21: 0.2051 S22: 0.1570 S23: 0.1113 REMARK 3 S31: -0.0188 S32: -0.1457 S33: -0.0160 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2647 -15.0228 14.4023 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1096 REMARK 3 T33: 0.3448 T12: 0.0431 REMARK 3 T13: -0.1511 T23: -0.1170 REMARK 3 L TENSOR REMARK 3 L11: 3.5250 L22: 3.8445 REMARK 3 L33: 1.0539 L12: -2.3592 REMARK 3 L13: -0.5895 L23: -0.0143 REMARK 3 S TENSOR REMARK 3 S11: -0.3279 S12: -0.4083 S13: 0.9321 REMARK 3 S21: 0.4570 S22: 0.2303 S23: -0.9047 REMARK 3 S31: -0.1066 S32: 0.0542 S33: 0.0977 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.ENDOGENOUS FLAVIN MONONUCLEOTIDE(FMN) HAS BEEN MODELED AT THE REMARK 3 PUTATIVE ACTIVE SITE BASED ON CLEAR ELECTRON DENSITY. 5.2,4- REMARK 3 METHANEPENTANEDIOL (MPD) FROM THE CRYSTALLIZATION SOLUTION HAS REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 3IN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.29 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97936,0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 28.712 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.120 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.5000% 2-METHYL-2,4-PENTANEDIOL, REMARK 280 0.1M SODIUM ACETATE PH 4.29, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.55400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.55400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.89300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.55400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.55400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.89300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.55400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.55400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.89300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.55400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.55400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.89300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 147 REMARK 465 LYS B 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 ASP A 87 CB CG OD1 OD2 REMARK 470 ASN A 88 CB CG OD1 ND2 REMARK 470 LYS A 115 CD CE NZ REMARK 470 LYS A 116 CD CE NZ REMARK 470 LYS A 124 CD CE NZ REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 3 CD OE1 OE2 REMARK 470 GLU B 16 CD OE1 OE2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 90 CE NZ REMARK 470 LYS B 92 CD CE NZ REMARK 470 GLU B 109 CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 116 CD CE NZ REMARK 470 ASN B 120 CG OD1 ND2 REMARK 470 LYS B 124 CD CE NZ REMARK 470 LYS B 135 CD CE NZ REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 31 53.80 -90.26 REMARK 500 ASP B 89 -82.59 -133.04 REMARK 500 ASN B 120 34.90 -98.70 REMARK 500 SER B 143 104.65 -164.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 380043 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3IN6 A 1 147 UNP Q0B0G9 Q0B0G9_SYNWW 1 147 DBREF 3IN6 B 1 147 UNP Q0B0G9 Q0B0G9_SYNWW 1 147 SEQADV 3IN6 GLY A 0 UNP Q0B0G9 EXPRESSION TAG SEQADV 3IN6 GLY B 0 UNP Q0B0G9 EXPRESSION TAG SEQRES 1 A 148 GLY MSE LEU GLU SER VAL ARG LYS GLU TRP LEU GLU ILE SEQRES 2 A 148 MSE ASP ARG GLU LEU LEU GLU LYS ALA ARG SER LEU ILE SEQRES 3 A 148 ASN ALA ASN TYR ILE SER THR THR LEU SER THR VAL ASP SEQRES 4 A 148 ARG ASN TYR GLU VAL ASN ILE ALA VAL ILE SER VAL LEU SEQRES 5 A 148 GLU MSE ILE GLY ASP ASP THR ILE ILE CYS ALA ARG PHE SEQRES 6 A 148 GLY ALA ASP LYS THR TYR ALA ASN LEU LYS GLU THR GLY SEQRES 7 A 148 LYS GLY VAL PHE MSE VAL LEU LEU THR ASP ASN ASP LYS SEQRES 8 A 148 SER LYS ASP GLY ILE ARG VAL TYR VAL GLU LEU SER ALA SEQRES 9 A 148 ASP LEU GLN GLU GLY GLU TYR PHE ASP ARG ILE LYS LYS SEQRES 10 A 148 ARG LEU ASP ASN THR THR TYR LYS ASN PHE PRO LEU LYS SEQRES 11 A 148 ASN CYS LEU VAL PHE LYS ILE VAL LYS ILE LEU PRO VAL SEQRES 12 A 148 SER LEU LEU ARG LYS SEQRES 1 B 148 GLY MSE LEU GLU SER VAL ARG LYS GLU TRP LEU GLU ILE SEQRES 2 B 148 MSE ASP ARG GLU LEU LEU GLU LYS ALA ARG SER LEU ILE SEQRES 3 B 148 ASN ALA ASN TYR ILE SER THR THR LEU SER THR VAL ASP SEQRES 4 B 148 ARG ASN TYR GLU VAL ASN ILE ALA VAL ILE SER VAL LEU SEQRES 5 B 148 GLU MSE ILE GLY ASP ASP THR ILE ILE CYS ALA ARG PHE SEQRES 6 B 148 GLY ALA ASP LYS THR TYR ALA ASN LEU LYS GLU THR GLY SEQRES 7 B 148 LYS GLY VAL PHE MSE VAL LEU LEU THR ASP ASN ASP LYS SEQRES 8 B 148 SER LYS ASP GLY ILE ARG VAL TYR VAL GLU LEU SER ALA SEQRES 9 B 148 ASP LEU GLN GLU GLY GLU TYR PHE ASP ARG ILE LYS LYS SEQRES 10 B 148 ARG LEU ASP ASN THR THR TYR LYS ASN PHE PRO LEU LYS SEQRES 11 B 148 ASN CYS LEU VAL PHE LYS ILE VAL LYS ILE LEU PRO VAL SEQRES 12 B 148 SER LEU LEU ARG LYS MODRES 3IN6 MSE A 1 MET SELENOMETHIONINE MODRES 3IN6 MSE A 13 MET SELENOMETHIONINE MODRES 3IN6 MSE A 53 MET SELENOMETHIONINE MODRES 3IN6 MSE A 82 MET SELENOMETHIONINE MODRES 3IN6 MSE B 1 MET SELENOMETHIONINE MODRES 3IN6 MSE B 13 MET SELENOMETHIONINE MODRES 3IN6 MSE B 53 MET SELENOMETHIONINE MODRES 3IN6 MSE B 82 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 13 8 HET MSE A 53 8 HET MSE A 82 8 HET MSE B 1 8 HET MSE B 13 8 HET MSE B 53 8 HET MSE B 82 8 HET FMN A 148 31 HET MPD A 149 8 HET FMN B 148 31 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 MPD C6 H14 O2 FORMUL 6 HOH *41(H2 O) HELIX 1 1 GLY A 0 ASN A 28 1 29 HELIX 2 2 ALA A 66 GLY A 77 1 12 HELIX 3 3 GLY A 108 ASN A 120 1 13 HELIX 4 4 THR A 121 PHE A 126 5 6 HELIX 5 5 GLY B 0 ALA B 27 1 28 HELIX 6 6 ALA B 66 GLY B 77 1 12 HELIX 7 7 GLY B 108 ASN B 120 1 13 HELIX 8 8 THR B 121 PHE B 126 5 6 SHEET 1 A 7 VAL A 43 VAL A 47 0 SHEET 2 A 7 THR A 32 VAL A 37 -1 N THR A 36 O ASN A 44 SHEET 3 A 7 LYS A 78 THR A 86 -1 O MSE A 82 N THR A 33 SHEET 4 A 7 SER A 91 LEU A 105 -1 O ASP A 93 N LEU A 85 SHEET 5 A 7 ASN A 130 LEU A 140 -1 O VAL A 133 N ALA A 103 SHEET 6 A 7 THR A 58 ARG A 63 -1 N ILE A 59 O PHE A 134 SHEET 7 A 7 LEU A 51 ILE A 54 -1 N GLU A 52 O ILE A 60 SHEET 1 B 7 VAL B 43 VAL B 47 0 SHEET 2 B 7 THR B 32 VAL B 37 -1 N THR B 36 O ASN B 44 SHEET 3 B 7 LYS B 78 THR B 86 -1 O VAL B 80 N SER B 35 SHEET 4 B 7 LYS B 92 LEU B 105 -1 O VAL B 97 N PHE B 81 SHEET 5 B 7 ASN B 130 PRO B 141 -1 O VAL B 133 N SER B 102 SHEET 6 B 7 THR B 58 ARG B 63 -1 N ILE B 59 O PHE B 134 SHEET 7 B 7 LEU B 51 ILE B 54 -1 N GLU B 52 O ILE B 60 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C ILE A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N ASP A 14 1555 1555 1.33 LINK C GLU A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N ILE A 54 1555 1555 1.33 LINK C PHE A 81 N MSE A 82 1555 1555 1.32 LINK C MSE A 82 N VAL A 83 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C ILE B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N ASP B 14 1555 1555 1.33 LINK C GLU B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N ILE B 54 1555 1555 1.33 LINK C PHE B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N VAL B 83 1555 1555 1.33 SITE 1 AC1 20 ILE A 30 ARG A 39 ASN A 44 ALA A 46 SITE 2 AC1 20 VAL A 47 ILE A 48 SER A 49 VAL A 50 SITE 3 AC1 20 ALA A 62 PHE A 64 GLY A 65 ALA A 66 SITE 4 AC1 20 LYS A 68 THR A 69 TYR A 123 LYS B 92 SITE 5 AC1 20 ARG B 96 SER B 143 LEU B 144 LEU B 145 SITE 1 AC2 5 ASP A 14 ILE A 136 LYS A 138 ILE A 139 SITE 2 AC2 5 HOH A 164 SITE 1 AC3 19 ARG A 96 SER A 143 LEU A 144 HOH A 168 SITE 2 AC3 19 ASN B 44 ALA B 46 VAL B 47 ILE B 48 SITE 3 AC3 19 SER B 49 VAL B 50 ALA B 62 ARG B 63 SITE 4 AC3 19 PHE B 64 GLY B 65 ALA B 66 ASP B 67 SITE 5 AC3 19 LYS B 68 THR B 69 TYR B 123 CRYST1 103.108 103.108 59.786 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016726 0.00000