HEADER HYDROLASE 13-AUG-09 3IO1 TITLE CRYSTAL STRUCTURE OF AMINOBENZOYL-GLUTAMATE UTILIZATION PROTEIN FROM TITLE 2 KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOBENZOYL-GLUTAMATE UTILIZATION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH SOURCE 3 78578; SOURCE 4 ORGANISM_TAXID: 272620; SOURCE 5 STRAIN: STRAIN ATCC 700721 / MGH 78578; SOURCE 6 GENE: ABGA, KPN78578_15040, KPN_01534; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS AMINOBENZOYL-GLUTAMATE UTILIZATION PROTEIN, PEPTIDASE_M20D KEYWDS 2 SUPERFAMILY, PROTEIN STRUCTURE INITIATIVE II, NYSGXRC, 11203B, KEYWDS 3 STRUCTURAL GENOMICS, PSI-2, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,K.BAUMANN,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 2 10-FEB-21 3IO1 1 AUTHOR JRNL REMARK LINK REVDAT 1 25-AUG-09 3IO1 0 JRNL AUTH D.KUMARAN,K.BAUMANN,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF AMINOBENZOYL-GLUTAMATE UTILIZATION JRNL TITL 2 PROTEIN FROM KLEBSIELLA PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 71876.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 33359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4886 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 265 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.68000 REMARK 3 B22 (A**2) : 12.07000 REMARK 3 B33 (A**2) : -7.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 29.05 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3IO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MALIC ACID, 20% PEG 3350, 0.01 M REMARK 280 YTTRIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 91.69500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.25950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 91.69500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.25950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 366.78000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 SER A 1 REMARK 465 ASN A 123 REMARK 465 GLU A 124 REMARK 465 GLN A 125 REMARK 465 HIS A 126 REMARK 465 ASP A 127 REMARK 465 ASP A 128 REMARK 465 SER A 129 REMARK 465 HIS A 130 REMARK 465 ARG A 131 REMARK 465 PRO A 132 REMARK 465 HIS A 133 REMARK 465 ARG A 134 REMARK 465 ASP A 135 REMARK 465 HIS A 136 REMARK 465 PHE A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 CYS A 140 REMARK 465 ASN A 141 REMARK 465 ALA A 142 REMARK 465 GLY A 143 REMARK 465 MSE A 144 REMARK 465 MSE A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 SER A 401 REMARK 465 ALA A 402 REMARK 465 GLY A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 ASN A 406 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 PHE A 409 REMARK 465 ASP A 410 REMARK 465 PHE A 411 REMARK 465 GLY A 435 REMARK 465 VAL A 436 REMARK 465 GLU A 437 REMARK 465 GLY A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 MSE B 0 REMARK 465 SER B 1 REMARK 465 ASN B 123 REMARK 465 GLU B 124 REMARK 465 GLN B 125 REMARK 465 HIS B 126 REMARK 465 ASP B 127 REMARK 465 ASP B 128 REMARK 465 SER B 129 REMARK 465 HIS B 130 REMARK 465 ARG B 131 REMARK 465 PRO B 132 REMARK 465 HIS B 133 REMARK 465 ARG B 134 REMARK 465 ASP B 135 REMARK 465 HIS B 136 REMARK 465 PHE B 137 REMARK 465 ALA B 138 REMARK 465 SER B 139 REMARK 465 CYS B 140 REMARK 465 ASN B 141 REMARK 465 ALA B 142 REMARK 465 GLY B 143 REMARK 465 MSE B 144 REMARK 465 MSE B 145 REMARK 465 HIS B 146 REMARK 465 ALA B 147 REMARK 465 CYS B 148 REMARK 465 GLY B 149 REMARK 465 HIS B 150 REMARK 465 GLU B 399 REMARK 465 LEU B 400 REMARK 465 SER B 401 REMARK 465 ALA B 402 REMARK 465 GLY B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 ASN B 406 REMARK 465 GLU B 407 REMARK 465 LYS B 408 REMARK 465 PHE B 409 REMARK 465 ASP B 410 REMARK 465 PHE B 411 REMARK 465 ASP B 412 REMARK 465 GLU B 437 REMARK 465 GLY B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 465 HIS B 443 REMARK 465 HIS B 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 3 18.98 56.01 REMARK 500 LEU A 11 -32.18 -134.93 REMARK 500 HIS A 25 57.82 -110.02 REMARK 500 TRP A 30 -3.82 72.17 REMARK 500 GLU A 32 42.26 -74.48 REMARK 500 ALA A 119 -168.19 -103.39 REMARK 500 HIS A 150 -29.30 174.06 REMARK 500 ALA A 182 54.47 37.83 REMARK 500 ASN A 224 26.97 -78.36 REMARK 500 ASN A 251 97.41 -68.79 REMARK 500 PRO A 359 -79.63 -38.88 REMARK 500 VAL A 365 -52.75 45.68 REMARK 500 ASP A 366 -58.33 87.91 REMARK 500 THR A 398 -13.04 -154.62 REMARK 500 GLN A 433 -73.29 -59.87 REMARK 500 LEU B 4 -58.56 145.32 REMARK 500 HIS B 25 52.58 -102.90 REMARK 500 GLU B 32 41.82 -82.84 REMARK 500 PRO B 84 108.22 -53.02 REMARK 500 ASP B 223 28.05 -144.97 REMARK 500 ASN B 224 46.76 -90.37 REMARK 500 ALA B 337 143.93 -171.17 REMARK 500 PRO B 359 -86.38 -31.02 REMARK 500 GLU B 375 116.05 -166.29 REMARK 500 GLN B 433 -81.32 -95.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD2 REMARK 620 2 ASP A 151 OD1 63.6 REMARK 620 3 ASP A 151 OD2 78.9 56.1 REMARK 620 4 GLU A 183 OE1 112.6 131.1 168.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD2 REMARK 620 2 GLU B 183 OE1 128.6 REMARK 620 3 GLU B 184 OE2 112.2 75.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11203B RELATED DB: TARGETDB DBREF 3IO1 A 3 436 UNP A6T8P4 A6T8P4_KLEP7 3 436 DBREF 3IO1 B 3 436 UNP A6T8P4 A6T8P4_KLEP7 3 436 SEQADV 3IO1 MSE A 0 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 SER A 1 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 LEU A 2 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 GLU A 437 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 GLY A 438 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS A 439 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS A 440 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS A 441 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS A 442 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS A 443 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS A 444 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 MSE B 0 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 SER B 1 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 LEU B 2 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 GLU B 437 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 GLY B 438 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS B 439 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS B 440 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS B 441 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS B 442 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS B 443 UNP A6T8P4 EXPRESSION TAG SEQADV 3IO1 HIS B 444 UNP A6T8P4 EXPRESSION TAG SEQRES 1 A 445 MSE SER LEU GLN LEU ASP GLU TYR LEU ARG GLN LEU ALA SEQRES 2 A 445 PRO SER MSE THR GLN TRP ARG ARG ASP PHE HIS LEU HIS SEQRES 3 A 445 ALA GLU SER GLY TRP LEU GLU PHE ARG THR ALA SER LYS SEQRES 4 A 445 VAL ALA ASP ILE LEU ASP GLY LEU GLY TYR GLN LEU ALA SEQRES 5 A 445 LEU GLY ARG ASP VAL ILE ASP ALA ASP SER ARG MSE GLY SEQRES 6 A 445 LEU PRO ASP GLU GLU THR LEU ALA ARG ALA PHE GLU ARG SEQRES 7 A 445 ALA ARG GLU GLN GLY ALA PRO GLU ARG TRP LEU PRO ALA SEQRES 8 A 445 PHE GLU GLY GLY PHE ALA GLY VAL VAL ALA THR LEU ASP SEQRES 9 A 445 THR GLY ARG PRO GLY PRO THR LEU ALA PHE ARG VAL ASP SEQRES 10 A 445 MSE ASP ALA LEU ASP LEU ASN GLU GLN HIS ASP ASP SER SEQRES 11 A 445 HIS ARG PRO HIS ARG ASP HIS PHE ALA SER CYS ASN ALA SEQRES 12 A 445 GLY MSE MSE HIS ALA CYS GLY HIS ASP GLY HIS THR ALA SEQRES 13 A 445 ILE GLY LEU GLY LEU ALA HIS VAL LEU LYS GLN TYR ALA SEQRES 14 A 445 ALA GLN LEU ASN GLY VAL ILE LYS LEU ILE PHE GLN PRO SEQRES 15 A 445 ALA GLU GLU GLY THR ARG GLY ALA ARG ALA MSE VAL ALA SEQRES 16 A 445 ALA GLY VAL VAL ASP ASP VAL ASP TYR PHE THR ALA ILE SEQRES 17 A 445 HIS ILE GLY THR GLY VAL PRO ALA GLY THR VAL VAL CYS SEQRES 18 A 445 GLY GLY ASP ASN PHE MSE ALA THR THR LYS PHE ASP VAL SEQRES 19 A 445 GLN PHE SER GLY VAL ALA ALA HIS ALA GLY GLY LYS PRO SEQRES 20 A 445 GLU ASP GLY ARG ASN ALA LEU LEU ALA ALA ALA GLN ALA SEQRES 21 A 445 ALA LEU GLY LEU HIS ALA ILE PRO PRO HIS SER ALA GLY SEQRES 22 A 445 ALA SER ARG VAL ASN VAL GLY VAL MSE GLN ALA GLY THR SEQRES 23 A 445 GLY ARG ASN VAL VAL PRO SER SER ALA LEU LEU LYS VAL SEQRES 24 A 445 GLU THR ARG GLY GLU SER GLU ALA ILE ASN GLN TYR VAL SEQRES 25 A 445 PHE GLU ARG ALA GLN HIS VAL VAL ALA GLY ALA ALA ALA SEQRES 26 A 445 MSE TYR GLU ALA ARG TYR GLU LEU ARG MSE MSE GLY ALA SEQRES 27 A 445 ALA THR ALA SER ALA PRO SER PRO ALA TRP VAL ASP TYR SEQRES 28 A 445 LEU ARG GLU GLN ALA ALA ARG VAL PRO GLY VAL GLN GLN SEQRES 29 A 445 ALA VAL ASP ARG ILE ALA ALA PRO ALA GLY SER GLU ASP SEQRES 30 A 445 ALA THR LEU MSE MSE ALA ARG VAL GLN ALA ARG GLY GLY SEQRES 31 A 445 LEU ALA SER TYR MSE ILE PHE GLY THR GLU LEU SER ALA SEQRES 32 A 445 GLY HIS HIS ASN GLU LYS PHE ASP PHE ASP GLU SER VAL SEQRES 33 A 445 MSE ALA VAL ALA VAL GLU THR LEU ALA ARG VAL ALA LEU SEQRES 34 A 445 ASN PHE PRO TRP GLN ARG GLY VAL GLU GLY HIS HIS HIS SEQRES 35 A 445 HIS HIS HIS SEQRES 1 B 445 MSE SER LEU GLN LEU ASP GLU TYR LEU ARG GLN LEU ALA SEQRES 2 B 445 PRO SER MSE THR GLN TRP ARG ARG ASP PHE HIS LEU HIS SEQRES 3 B 445 ALA GLU SER GLY TRP LEU GLU PHE ARG THR ALA SER LYS SEQRES 4 B 445 VAL ALA ASP ILE LEU ASP GLY LEU GLY TYR GLN LEU ALA SEQRES 5 B 445 LEU GLY ARG ASP VAL ILE ASP ALA ASP SER ARG MSE GLY SEQRES 6 B 445 LEU PRO ASP GLU GLU THR LEU ALA ARG ALA PHE GLU ARG SEQRES 7 B 445 ALA ARG GLU GLN GLY ALA PRO GLU ARG TRP LEU PRO ALA SEQRES 8 B 445 PHE GLU GLY GLY PHE ALA GLY VAL VAL ALA THR LEU ASP SEQRES 9 B 445 THR GLY ARG PRO GLY PRO THR LEU ALA PHE ARG VAL ASP SEQRES 10 B 445 MSE ASP ALA LEU ASP LEU ASN GLU GLN HIS ASP ASP SER SEQRES 11 B 445 HIS ARG PRO HIS ARG ASP HIS PHE ALA SER CYS ASN ALA SEQRES 12 B 445 GLY MSE MSE HIS ALA CYS GLY HIS ASP GLY HIS THR ALA SEQRES 13 B 445 ILE GLY LEU GLY LEU ALA HIS VAL LEU LYS GLN TYR ALA SEQRES 14 B 445 ALA GLN LEU ASN GLY VAL ILE LYS LEU ILE PHE GLN PRO SEQRES 15 B 445 ALA GLU GLU GLY THR ARG GLY ALA ARG ALA MSE VAL ALA SEQRES 16 B 445 ALA GLY VAL VAL ASP ASP VAL ASP TYR PHE THR ALA ILE SEQRES 17 B 445 HIS ILE GLY THR GLY VAL PRO ALA GLY THR VAL VAL CYS SEQRES 18 B 445 GLY GLY ASP ASN PHE MSE ALA THR THR LYS PHE ASP VAL SEQRES 19 B 445 GLN PHE SER GLY VAL ALA ALA HIS ALA GLY GLY LYS PRO SEQRES 20 B 445 GLU ASP GLY ARG ASN ALA LEU LEU ALA ALA ALA GLN ALA SEQRES 21 B 445 ALA LEU GLY LEU HIS ALA ILE PRO PRO HIS SER ALA GLY SEQRES 22 B 445 ALA SER ARG VAL ASN VAL GLY VAL MSE GLN ALA GLY THR SEQRES 23 B 445 GLY ARG ASN VAL VAL PRO SER SER ALA LEU LEU LYS VAL SEQRES 24 B 445 GLU THR ARG GLY GLU SER GLU ALA ILE ASN GLN TYR VAL SEQRES 25 B 445 PHE GLU ARG ALA GLN HIS VAL VAL ALA GLY ALA ALA ALA SEQRES 26 B 445 MSE TYR GLU ALA ARG TYR GLU LEU ARG MSE MSE GLY ALA SEQRES 27 B 445 ALA THR ALA SER ALA PRO SER PRO ALA TRP VAL ASP TYR SEQRES 28 B 445 LEU ARG GLU GLN ALA ALA ARG VAL PRO GLY VAL GLN GLN SEQRES 29 B 445 ALA VAL ASP ARG ILE ALA ALA PRO ALA GLY SER GLU ASP SEQRES 30 B 445 ALA THR LEU MSE MSE ALA ARG VAL GLN ALA ARG GLY GLY SEQRES 31 B 445 LEU ALA SER TYR MSE ILE PHE GLY THR GLU LEU SER ALA SEQRES 32 B 445 GLY HIS HIS ASN GLU LYS PHE ASP PHE ASP GLU SER VAL SEQRES 33 B 445 MSE ALA VAL ALA VAL GLU THR LEU ALA ARG VAL ALA LEU SEQRES 34 B 445 ASN PHE PRO TRP GLN ARG GLY VAL GLU GLY HIS HIS HIS SEQRES 35 B 445 HIS HIS HIS MODRES 3IO1 MSE A 15 MET SELENOMETHIONINE MODRES 3IO1 MSE A 63 MET SELENOMETHIONINE MODRES 3IO1 MSE A 117 MET SELENOMETHIONINE MODRES 3IO1 MSE A 192 MET SELENOMETHIONINE MODRES 3IO1 MSE A 226 MET SELENOMETHIONINE MODRES 3IO1 MSE A 281 MET SELENOMETHIONINE MODRES 3IO1 MSE A 325 MET SELENOMETHIONINE MODRES 3IO1 MSE A 334 MET SELENOMETHIONINE MODRES 3IO1 MSE A 335 MET SELENOMETHIONINE MODRES 3IO1 MSE A 380 MET SELENOMETHIONINE MODRES 3IO1 MSE A 381 MET SELENOMETHIONINE MODRES 3IO1 MSE A 394 MET SELENOMETHIONINE MODRES 3IO1 MSE A 416 MET SELENOMETHIONINE MODRES 3IO1 MSE B 15 MET SELENOMETHIONINE MODRES 3IO1 MSE B 63 MET SELENOMETHIONINE MODRES 3IO1 MSE B 117 MET SELENOMETHIONINE MODRES 3IO1 MSE B 192 MET SELENOMETHIONINE MODRES 3IO1 MSE B 226 MET SELENOMETHIONINE MODRES 3IO1 MSE B 281 MET SELENOMETHIONINE MODRES 3IO1 MSE B 325 MET SELENOMETHIONINE MODRES 3IO1 MSE B 334 MET SELENOMETHIONINE MODRES 3IO1 MSE B 335 MET SELENOMETHIONINE MODRES 3IO1 MSE B 380 MET SELENOMETHIONINE MODRES 3IO1 MSE B 381 MET SELENOMETHIONINE MODRES 3IO1 MSE B 394 MET SELENOMETHIONINE MODRES 3IO1 MSE B 416 MET SELENOMETHIONINE HET MSE A 15 8 HET MSE A 63 8 HET MSE A 117 8 HET MSE A 192 8 HET MSE A 226 8 HET MSE A 281 8 HET MSE A 325 8 HET MSE A 334 8 HET MSE A 335 8 HET MSE A 380 8 HET MSE A 381 8 HET MSE A 394 8 HET MSE A 416 8 HET MSE B 15 8 HET MSE B 63 8 HET MSE B 117 8 HET MSE B 192 8 HET MSE B 226 8 HET MSE B 281 8 HET MSE B 325 8 HET MSE B 334 8 HET MSE B 335 8 HET MSE B 380 8 HET MSE B 381 8 HET MSE B 394 8 HET MSE B 416 8 HET YT3 A 500 1 HET NA A 501 1 HET NA B 502 1 HETNAM MSE SELENOMETHIONINE HETNAM YT3 YTTRIUM (III) ION HETNAM NA SODIUM ION FORMUL 1 MSE 26(C5 H11 N O2 SE) FORMUL 3 YT3 Y 3+ FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *94(H2 O) HELIX 1 1 GLN A 3 GLN A 10 1 8 HELIX 2 2 LEU A 11 HIS A 25 1 15 HELIX 3 3 GLU A 32 LEU A 46 1 15 HELIX 4 4 ARG A 54 VAL A 56 5 3 HELIX 5 5 ASP A 67 GLU A 80 1 14 HELIX 6 6 TRP A 87 GLU A 92 5 6 HELIX 7 7 GLY A 152 TYR A 167 1 16 HELIX 8 8 ALA A 168 LEU A 171 5 4 HELIX 9 9 ARG A 187 ALA A 195 1 9 HELIX 10 10 LYS A 245 GLY A 249 5 5 HELIX 11 11 ASN A 251 ALA A 265 1 15 HELIX 12 12 SER A 304 TYR A 326 1 23 HELIX 13 13 SER A 344 VAL A 358 1 15 HELIX 14 14 ASP A 376 ARG A 387 1 12 HELIX 15 15 SER A 414 ASN A 429 1 16 HELIX 16 16 LEU B 4 GLN B 10 1 7 HELIX 17 17 LEU B 11 HIS B 25 1 15 HELIX 18 18 GLU B 32 LEU B 46 1 15 HELIX 19 19 ARG B 54 VAL B 56 5 3 HELIX 20 20 ASP B 58 ARG B 62 5 5 HELIX 21 21 ASP B 67 GLN B 81 1 15 HELIX 22 22 TRP B 87 GLU B 92 5 6 HELIX 23 23 GLY B 152 TYR B 167 1 16 HELIX 24 24 ALA B 168 LEU B 171 5 4 HELIX 25 25 GLY B 188 ALA B 195 1 8 HELIX 26 26 LYS B 245 GLY B 249 5 5 HELIX 27 27 ASN B 251 ALA B 265 1 15 HELIX 28 28 SER B 304 TYR B 326 1 23 HELIX 29 29 SER B 344 VAL B 358 1 15 HELIX 30 30 ASP B 376 ARG B 387 1 12 HELIX 31 31 SER B 414 ASN B 429 1 16 SHEET 1 A 7 GLN A 49 LEU A 52 0 SHEET 2 A 7 VAL A 98 ASP A 103 -1 O THR A 101 N GLN A 49 SHEET 3 A 7 VAL A 174 GLN A 180 -1 O PHE A 179 N VAL A 98 SHEET 4 A 7 THR A 110 ASP A 116 1 N PHE A 113 O ILE A 178 SHEET 5 A 7 TYR A 203 PRO A 214 1 O TYR A 203 N ALA A 112 SHEET 6 A 7 LEU A 390 GLU A 399 1 O MSE A 394 N ALA A 206 SHEET 7 A 7 VAL A 218 VAL A 219 -1 N VAL A 219 O ILE A 395 SHEET 1 B 8 ARG A 329 ALA A 338 0 SHEET 2 B 8 ALA A 227 SER A 236 -1 N LYS A 230 O GLY A 336 SHEET 3 B 8 SER A 293 GLY A 302 -1 O ALA A 294 N PHE A 235 SHEET 4 B 8 SER A 274 ALA A 283 -1 N ARG A 275 O ARG A 301 SHEET 5 B 8 SER B 274 ALA B 283 -1 O MSE B 281 N ALA A 283 SHEET 6 B 8 SER B 293 GLY B 302 -1 O LEU B 295 N GLN B 282 SHEET 7 B 8 ALA B 227 SER B 236 -1 N PHE B 235 O ALA B 294 SHEET 8 B 8 ARG B 329 ALA B 338 -1 O ARG B 329 N SER B 236 SHEET 1 C 8 GLN B 49 LEU B 52 0 SHEET 2 C 8 VAL B 98 ASP B 103 -1 O THR B 101 N GLN B 49 SHEET 3 C 8 VAL B 174 GLN B 180 -1 O ILE B 175 N LEU B 102 SHEET 4 C 8 THR B 110 ASP B 116 1 N VAL B 115 O GLN B 180 SHEET 5 C 8 TYR B 203 GLY B 210 1 O TYR B 203 N ALA B 112 SHEET 6 C 8 LEU B 390 GLY B 397 1 O PHE B 396 N GLY B 210 SHEET 7 C 8 THR B 217 VAL B 219 -1 N VAL B 219 O ILE B 395 SHEET 8 C 8 GLN B 363 VAL B 365 1 O GLN B 363 N VAL B 218 LINK C SER A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N THR A 16 1555 1555 1.33 LINK C ARG A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N GLY A 64 1555 1555 1.33 LINK C ASP A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N ASP A 118 1555 1555 1.33 LINK C ALA A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N VAL A 193 1555 1555 1.33 LINK C PHE A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N ALA A 227 1555 1555 1.33 LINK C VAL A 280 N MSE A 281 1555 1555 1.33 LINK C MSE A 281 N GLN A 282 1555 1555 1.32 LINK C ALA A 324 N MSE A 325 1555 1555 1.34 LINK C MSE A 325 N TYR A 326 1555 1555 1.33 LINK C ARG A 333 N MSE A 334 1555 1555 1.33 LINK C MSE A 334 N MSE A 335 1555 1555 1.33 LINK C MSE A 335 N GLY A 336 1555 1555 1.32 LINK C LEU A 379 N MSE A 380 1555 1555 1.33 LINK C MSE A 380 N MSE A 381 1555 1555 1.33 LINK C MSE A 381 N ALA A 382 1555 1555 1.33 LINK C TYR A 393 N MSE A 394 1555 1555 1.33 LINK C MSE A 394 N ILE A 395 1555 1555 1.33 LINK C VAL A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N ALA A 417 1555 1555 1.33 LINK C SER B 14 N MSE B 15 1555 1555 1.33 LINK C MSE B 15 N THR B 16 1555 1555 1.33 LINK C ARG B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N GLY B 64 1555 1555 1.33 LINK C ASP B 116 N MSE B 117 1555 1555 1.33 LINK C MSE B 117 N ASP B 118 1555 1555 1.33 LINK C ALA B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N VAL B 193 1555 1555 1.33 LINK C PHE B 225 N MSE B 226 1555 1555 1.33 LINK C MSE B 226 N ALA B 227 1555 1555 1.33 LINK C VAL B 280 N MSE B 281 1555 1555 1.32 LINK C MSE B 281 N GLN B 282 1555 1555 1.33 LINK C ALA B 324 N MSE B 325 1555 1555 1.33 LINK C MSE B 325 N TYR B 326 1555 1555 1.33 LINK C ARG B 333 N MSE B 334 1555 1555 1.33 LINK C MSE B 334 N MSE B 335 1555 1555 1.32 LINK C MSE B 335 N GLY B 336 1555 1555 1.33 LINK C LEU B 379 N MSE B 380 1555 1555 1.33 LINK C MSE B 380 N MSE B 381 1555 1555 1.33 LINK C MSE B 381 N ALA B 382 1555 1555 1.33 LINK C TYR B 393 N MSE B 394 1555 1555 1.33 LINK C MSE B 394 N ILE B 395 1555 1555 1.33 LINK C VAL B 415 N MSE B 416 1555 1555 1.33 LINK C MSE B 416 N ALA B 417 1555 1555 1.33 LINK OD2 ASP A 116 NA NA A 501 1555 1555 2.38 LINK OD1 ASP A 151 NA NA A 501 1555 1555 2.39 LINK OD2 ASP A 151 NA NA A 501 1555 1555 2.27 LINK OE1 GLU A 183 NA NA A 501 1555 1555 2.44 LINK OD2 ASP B 151 NA NA B 502 1555 1555 2.30 LINK OE1 GLU B 183 NA NA B 502 1555 1555 2.50 LINK OE2 GLU B 184 NA NA B 502 1555 1555 2.76 SITE 1 AC1 5 ASP A 5 GLU A 6 HOH A 479 HOH A 481 SITE 2 AC1 5 ASP B 5 SITE 1 AC2 4 ASP A 116 ASP A 151 GLU A 183 GLU A 184 SITE 1 AC3 4 ASP B 116 ASP B 151 GLU B 183 GLU B 184 CRYST1 183.390 48.519 107.998 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005453 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009259 0.00000