HEADER DNA BINDING PROTEIN 13-AUG-09 3IO5 TITLE CRYSTAL STRUCTURE OF A DIMERIC FORM OF THE UVSX RECOMBINASE CORE TITLE 2 DOMAIN FROM ENTEROBACTERIA PHAGE T4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECOMBINATION AND REPAIR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-358; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 10665; SOURCE 5 GENE: FDSA, UVSX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS STORAGE DIMER, INACTIVE CONFORMATION, RECA LIKE CORE DOMAIN, ATP- KEYWDS 2 BINDING, DNA DAMAGE, DNA RECOMBINATION, DNA REPAIR, DNA REPLICATION, KEYWDS 3 NUCLEOTIDE-BINDING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GAJEWSKI REVDAT 4 21-FEB-24 3IO5 1 REMARK SEQADV REVDAT 3 01-NOV-17 3IO5 1 REMARK REVDAT 2 05-JAN-11 3IO5 1 JRNL REVDAT 1 25-AUG-10 3IO5 0 JRNL AUTH S.GAJEWSKI,M.R.WEBB,V.GALKIN,E.H.EGELMAN,K.N.KREUZER, JRNL AUTH 2 S.W.WHITE JRNL TITL CRYSTAL STRUCTURE OF THE PHAGE T4 RECOMBINASE UVSX AND ITS JRNL TITL 2 FUNCTIONAL INTERACTION WITH THE T4 SF2 HELICASE UVSW. JRNL REF J.MOL.BIOL. V. 405 65 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21035462 JRNL DOI 10.1016/J.JMB.2010.10.004 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0035 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1738 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : -0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.374 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.557 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4319 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5838 ; 1.759 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 535 ; 9.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;40.820 ;23.352 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;18.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.485 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3216 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2695 ; 0.812 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4341 ; 1.545 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1624 ; 2.553 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 4.183 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 22 A 336 4 REMARK 3 1 B 22 B 336 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2039 ; 0.310 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2039 ; 1.060 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5440 33.5890 79.0790 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.3097 REMARK 3 T33: 0.0321 T12: 0.0299 REMARK 3 T13: 0.0380 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.8129 L22: 3.1237 REMARK 3 L33: 2.8299 L12: -1.6042 REMARK 3 L13: 0.2515 L23: -0.7889 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.1994 S13: 0.1366 REMARK 3 S21: -0.0101 S22: -0.0510 S23: -0.0672 REMARK 3 S31: -0.5423 S32: -0.3281 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0620 40.4660 110.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.3783 REMARK 3 T33: 0.0685 T12: 0.0570 REMARK 3 T13: 0.0185 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 4.3061 L22: 2.8345 REMARK 3 L33: 1.6230 L12: -2.7088 REMARK 3 L13: -0.9320 L23: 0.4156 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: 0.1351 S13: 0.1342 REMARK 3 S21: -0.0588 S22: 0.0723 S23: -0.0120 REMARK 3 S31: -0.1012 S32: 0.0525 S33: -0.1507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3IO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI-220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 29.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, AMMONIUM PHOSPHATE, REMARK 280 DTT, HEPES-NA, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.75800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.51600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.63700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.39500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.87900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 HIS A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 152 REMARK 465 GLU A 153 REMARK 465 THR A 154 REMARK 465 GLU A 155 REMARK 465 ASP A 156 REMARK 465 ALA A 157 REMARK 465 LEU A 158 REMARK 465 ASN A 159 REMARK 465 GLU A 160 REMARK 465 LYS A 161 REMARK 465 VAL A 162 REMARK 465 VAL A 163 REMARK 465 SER A 164 REMARK 465 ASP A 165 REMARK 465 TYR A 197 REMARK 465 GLU A 198 REMARK 465 THR A 199 REMARK 465 GLN A 200 REMARK 465 GLU A 201 REMARK 465 MET A 202 REMARK 465 PHE A 203 REMARK 465 SER A 204 REMARK 465 LYS A 205 REMARK 465 THR A 206 REMARK 465 VAL A 207 REMARK 465 MET A 208 REMARK 465 GLY A 209 REMARK 465 GLY A 210 REMARK 465 GLY A 211 REMARK 465 GLN A 228 REMARK 465 ILE A 229 REMARK 465 LYS A 230 REMARK 465 ASP A 231 REMARK 465 GLY A 232 REMARK 465 SER A 233 REMARK 465 ASP A 234 REMARK 465 LEU A 235 REMARK 465 GLN A 236 REMARK 465 GLY A 237 REMARK 465 ALA A 341 REMARK 465 ILE A 342 REMARK 465 ASP A 343 REMARK 465 SER A 344 REMARK 465 ASN A 345 REMARK 465 GLU A 346 REMARK 465 ILE A 347 REMARK 465 VAL A 348 REMARK 465 GLU A 349 REMARK 465 ALA A 350 REMARK 465 GLU A 351 REMARK 465 VAL A 352 REMARK 465 ASP A 353 REMARK 465 GLU A 354 REMARK 465 LEU A 355 REMARK 465 ILE A 356 REMARK 465 ASN A 357 REMARK 465 SER A 358 REMARK 465 GLY B 26 REMARK 465 SER B 27 REMARK 465 HIS B 28 REMARK 465 MET B 29 REMARK 465 ASP B 30 REMARK 465 LYS B 152 REMARK 465 GLU B 153 REMARK 465 THR B 154 REMARK 465 GLU B 155 REMARK 465 ASP B 156 REMARK 465 ALA B 157 REMARK 465 LEU B 158 REMARK 465 ASN B 159 REMARK 465 GLU B 160 REMARK 465 LYS B 161 REMARK 465 VAL B 162 REMARK 465 VAL B 163 REMARK 465 SER B 164 REMARK 465 ASP B 165 REMARK 465 MET B 166 REMARK 465 GLU B 198 REMARK 465 THR B 199 REMARK 465 GLN B 200 REMARK 465 GLU B 201 REMARK 465 MET B 202 REMARK 465 PHE B 203 REMARK 465 SER B 204 REMARK 465 LYS B 205 REMARK 465 THR B 206 REMARK 465 VAL B 207 REMARK 465 MET B 208 REMARK 465 GLY B 209 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 GLN B 228 REMARK 465 ILE B 229 REMARK 465 LYS B 230 REMARK 465 ASP B 231 REMARK 465 GLY B 232 REMARK 465 SER B 233 REMARK 465 ASP B 234 REMARK 465 LEU B 235 REMARK 465 GLN B 236 REMARK 465 GLY B 237 REMARK 465 TYR B 238 REMARK 465 ASP B 343 REMARK 465 SER B 344 REMARK 465 ASN B 345 REMARK 465 GLU B 346 REMARK 465 ILE B 347 REMARK 465 VAL B 348 REMARK 465 GLU B 349 REMARK 465 ALA B 350 REMARK 465 GLU B 351 REMARK 465 VAL B 352 REMARK 465 ASP B 353 REMARK 465 GLU B 354 REMARK 465 LEU B 355 REMARK 465 ILE B 356 REMARK 465 ASN B 357 REMARK 465 SER B 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 238 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 PHE A 262 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 263 CG OD1 OD2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 VAL B 31 CG1 CG2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 PHE B 262 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 LYS B 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 177 O HOH B 365 2.17 REMARK 500 OG SER A 75 NH2 ARG A 79 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 SER B 144 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 32 73.54 71.07 REMARK 500 SER B 270 120.52 -37.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 143 SER A 144 60.16 REMARK 500 ASP B 143 SER B 144 -68.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 143 15.77 REMARK 500 ASP B 143 -13.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2 DBREF 3IO5 A 30 358 UNP P04529 UVSX_BPT4 30 358 DBREF 3IO5 B 30 358 UNP P04529 UVSX_BPT4 30 358 SEQADV 3IO5 GLY A 26 UNP P04529 EXPRESSION TAG SEQADV 3IO5 SER A 27 UNP P04529 EXPRESSION TAG SEQADV 3IO5 HIS A 28 UNP P04529 EXPRESSION TAG SEQADV 3IO5 MET A 29 UNP P04529 EXPRESSION TAG SEQADV 3IO5 GLY B 26 UNP P04529 EXPRESSION TAG SEQADV 3IO5 SER B 27 UNP P04529 EXPRESSION TAG SEQADV 3IO5 HIS B 28 UNP P04529 EXPRESSION TAG SEQADV 3IO5 MET B 29 UNP P04529 EXPRESSION TAG SEQRES 1 A 333 GLY SER HIS MET ASP VAL VAL ARG THR LYS ILE PRO MET SEQRES 2 A 333 MET ASN ILE ALA LEU SER GLY GLU ILE THR GLY GLY MET SEQRES 3 A 333 GLN SER GLY LEU LEU ILE LEU ALA GLY PRO SER LYS SER SEQRES 4 A 333 PHE LYS SER ASN PHE GLY LEU THR MET VAL SER SER TYR SEQRES 5 A 333 MET ARG GLN TYR PRO ASP ALA VAL CYS LEU PHE TYR ASP SEQRES 6 A 333 SER GLU PHE GLY ILE THR PRO ALA TYR LEU ARG SER MET SEQRES 7 A 333 GLY VAL ASP PRO GLU ARG VAL ILE HIS THR PRO VAL GLN SEQRES 8 A 333 SER LEU GLU GLN LEU ARG ILE ASP MET VAL ASN GLN LEU SEQRES 9 A 333 ASP ALA ILE GLU ARG GLY GLU LYS VAL VAL VAL PHE ILE SEQRES 10 A 333 ASP SER LEU GLY ASN LEU ALA SER LYS LYS GLU THR GLU SEQRES 11 A 333 ASP ALA LEU ASN GLU LYS VAL VAL SER ASP MET THR ARG SEQRES 12 A 333 ALA LYS THR MET LYS SER LEU PHE ARG ILE VAL THR PRO SEQRES 13 A 333 TYR PHE SER THR LYS ASN ILE PRO CYS ILE ALA ILE ASN SEQRES 14 A 333 HIS THR TYR GLU THR GLN GLU MET PHE SER LYS THR VAL SEQRES 15 A 333 MET GLY GLY GLY THR GLY PRO MET TYR SER ALA ASP THR SEQRES 16 A 333 VAL PHE ILE ILE GLY LYS ARG GLN ILE LYS ASP GLY SER SEQRES 17 A 333 ASP LEU GLN GLY TYR GLN PHE VAL LEU ASN VAL GLU LYS SEQRES 18 A 333 SER ARG THR VAL LYS GLU LYS SER LYS PHE PHE ILE ASP SEQRES 19 A 333 VAL LYS PHE ASP GLY GLY ILE ASP PRO TYR SER GLY LEU SEQRES 20 A 333 LEU ASP MET ALA LEU GLU LEU GLY PHE VAL VAL LYS PRO SEQRES 21 A 333 LYS ASN GLY TRP TYR ALA ARG GLU PHE LEU ASP GLU GLU SEQRES 22 A 333 THR GLY GLU MET ILE ARG GLU GLU LYS SER TRP ARG ALA SEQRES 23 A 333 LYS ASP THR ASN CYS THR THR PHE TRP GLY PRO LEU PHE SEQRES 24 A 333 LYS HIS GLN PRO PHE ARG ASP ALA ILE LYS ARG ALA TYR SEQRES 25 A 333 GLN LEU GLY ALA ILE ASP SER ASN GLU ILE VAL GLU ALA SEQRES 26 A 333 GLU VAL ASP GLU LEU ILE ASN SER SEQRES 1 B 333 GLY SER HIS MET ASP VAL VAL ARG THR LYS ILE PRO MET SEQRES 2 B 333 MET ASN ILE ALA LEU SER GLY GLU ILE THR GLY GLY MET SEQRES 3 B 333 GLN SER GLY LEU LEU ILE LEU ALA GLY PRO SER LYS SER SEQRES 4 B 333 PHE LYS SER ASN PHE GLY LEU THR MET VAL SER SER TYR SEQRES 5 B 333 MET ARG GLN TYR PRO ASP ALA VAL CYS LEU PHE TYR ASP SEQRES 6 B 333 SER GLU PHE GLY ILE THR PRO ALA TYR LEU ARG SER MET SEQRES 7 B 333 GLY VAL ASP PRO GLU ARG VAL ILE HIS THR PRO VAL GLN SEQRES 8 B 333 SER LEU GLU GLN LEU ARG ILE ASP MET VAL ASN GLN LEU SEQRES 9 B 333 ASP ALA ILE GLU ARG GLY GLU LYS VAL VAL VAL PHE ILE SEQRES 10 B 333 ASP SER LEU GLY ASN LEU ALA SER LYS LYS GLU THR GLU SEQRES 11 B 333 ASP ALA LEU ASN GLU LYS VAL VAL SER ASP MET THR ARG SEQRES 12 B 333 ALA LYS THR MET LYS SER LEU PHE ARG ILE VAL THR PRO SEQRES 13 B 333 TYR PHE SER THR LYS ASN ILE PRO CYS ILE ALA ILE ASN SEQRES 14 B 333 HIS THR TYR GLU THR GLN GLU MET PHE SER LYS THR VAL SEQRES 15 B 333 MET GLY GLY GLY THR GLY PRO MET TYR SER ALA ASP THR SEQRES 16 B 333 VAL PHE ILE ILE GLY LYS ARG GLN ILE LYS ASP GLY SER SEQRES 17 B 333 ASP LEU GLN GLY TYR GLN PHE VAL LEU ASN VAL GLU LYS SEQRES 18 B 333 SER ARG THR VAL LYS GLU LYS SER LYS PHE PHE ILE ASP SEQRES 19 B 333 VAL LYS PHE ASP GLY GLY ILE ASP PRO TYR SER GLY LEU SEQRES 20 B 333 LEU ASP MET ALA LEU GLU LEU GLY PHE VAL VAL LYS PRO SEQRES 21 B 333 LYS ASN GLY TRP TYR ALA ARG GLU PHE LEU ASP GLU GLU SEQRES 22 B 333 THR GLY GLU MET ILE ARG GLU GLU LYS SER TRP ARG ALA SEQRES 23 B 333 LYS ASP THR ASN CYS THR THR PHE TRP GLY PRO LEU PHE SEQRES 24 B 333 LYS HIS GLN PRO PHE ARG ASP ALA ILE LYS ARG ALA TYR SEQRES 25 B 333 GLN LEU GLY ALA ILE ASP SER ASN GLU ILE VAL GLU ALA SEQRES 26 B 333 GLU VAL ASP GLU LEU ILE ASN SER HET PO4 A 1 5 HET PO4 B 2 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *55(H2 O) HELIX 1 1 ILE A 36 GLY A 45 1 10 HELIX 2 2 PHE A 65 TYR A 81 1 17 HELIX 3 3 THR A 96 MET A 103 1 8 HELIX 4 4 ASP A 106 GLU A 108 5 3 HELIX 5 5 SER A 117 ALA A 131 1 15 HELIX 6 6 THR A 167 LYS A 186 1 20 HELIX 7 7 GLY A 213 ALA A 218 5 6 HELIX 8 8 GLY A 271 LEU A 279 1 9 HELIX 9 9 LYS A 312 ASN A 315 5 4 HELIX 10 10 CYS A 316 LYS A 325 1 10 HELIX 11 11 HIS A 326 GLN A 338 1 13 HELIX 12 12 ILE B 36 GLY B 45 1 10 HELIX 13 13 PHE B 65 TYR B 81 1 17 HELIX 14 14 THR B 96 MET B 103 1 8 HELIX 15 15 ASP B 106 GLU B 108 5 3 HELIX 16 16 SER B 117 ALA B 131 1 15 HELIX 17 17 THR B 167 LYS B 186 1 20 HELIX 18 18 GLY B 213 ALA B 218 5 6 HELIX 19 19 GLY B 271 LEU B 279 1 9 HELIX 20 20 ARG B 310 ASN B 315 1 6 HELIX 21 21 CYS B 316 LYS B 325 1 10 HELIX 22 22 HIS B 326 GLN B 338 1 13 SHEET 1 A 8 VAL A 110 PRO A 114 0 SHEET 2 A 8 VAL A 85 ASP A 90 1 N CYS A 86 O ILE A 111 SHEET 3 A 8 VAL A 138 ASP A 143 1 O ASP A 143 N TYR A 89 SHEET 4 A 8 PRO A 189 HIS A 195 1 O ILE A 191 N VAL A 140 SHEET 5 A 8 GLY A 54 GLY A 60 1 N LEU A 56 O CYS A 190 SHEET 6 A 8 THR A 220 LYS A 226 1 O PHE A 222 N ALA A 59 SHEET 7 A 8 GLN A 239 LYS A 246 -1 O ASN A 243 N ILE A 223 SHEET 8 A 8 LYS A 255 ASP A 259 -1 O ILE A 258 N PHE A 240 SHEET 1 B 3 VAL A 282 VAL A 283 0 SHEET 2 B 3 TRP A 289 LEU A 295 -1 O ALA A 291 N VAL A 283 SHEET 3 B 3 MET A 302 ARG A 304 -1 O ILE A 303 N PHE A 294 SHEET 1 C 3 VAL A 282 VAL A 283 0 SHEET 2 C 3 TRP A 289 LEU A 295 -1 O ALA A 291 N VAL A 283 SHEET 3 C 3 TRP A 309 ARG A 310 -1 O TRP A 309 N TYR A 290 SHEET 1 D 8 VAL B 110 PRO B 114 0 SHEET 2 D 8 VAL B 85 ASP B 90 1 N PHE B 88 O THR B 113 SHEET 3 D 8 VAL B 138 ASP B 143 1 O VAL B 139 N LEU B 87 SHEET 4 D 8 PRO B 189 THR B 196 1 O ILE B 191 N VAL B 140 SHEET 5 D 8 GLY B 54 PRO B 61 1 N LEU B 56 O CYS B 190 SHEET 6 D 8 THR B 220 GLY B 225 1 O THR B 220 N ILE B 57 SHEET 7 D 8 PHE B 240 LYS B 246 -1 O ASN B 243 N ILE B 223 SHEET 8 D 8 LYS B 255 ILE B 258 -1 O ILE B 258 N PHE B 240 SHEET 1 E 3 VAL B 282 VAL B 283 0 SHEET 2 E 3 ALA B 291 ASP B 296 -1 O ALA B 291 N VAL B 283 SHEET 3 E 3 GLU B 301 ARG B 304 -1 O ILE B 303 N PHE B 294 SITE 1 AC1 9 SER A 62 LYS A 63 SER A 64 PHE A 65 SITE 2 AC1 9 LYS A 66 SER A 67 HIS A 195 HOH A 359 SITE 3 AC1 9 HOH A 368 SITE 1 AC2 8 HOH B 22 SER B 62 LYS B 63 SER B 64 SITE 2 AC2 8 PHE B 65 LYS B 66 SER B 67 HIS B 195 CRYST1 95.974 95.974 131.274 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010419 0.006016 0.000000 0.00000 SCALE2 0.000000 0.012031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007618 0.00000