HEADER ACYL-COA BINDING PROTEIN 21-AUG-09 3IRB TITLE CRYSTAL STRUCTURE OF PROTEIN WITH UNKNOWN FUNCTION FROM DUF35 FAMILY TITLE 2 (13815350) FROM SULFOLOBUS SOLFATARICUS AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN FROM DUF35 FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 ORGANISM_TAXID: 2287; SOURCE 5 GENE: 13815350, SSO2064; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 13815350, PROTEIN WITH UNKNOWN FUNCTION FROM DUF35 FAMILY, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, DOMAIN OF UNKNOWN FUNCTION DUF35, KEYWDS 4 UNKNOWN FUNCTION, ACYL-COA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3IRB 1 REMARK SEQADV REVDAT 5 24-JUL-19 3IRB 1 REMARK LINK REVDAT 4 25-OCT-17 3IRB 1 REMARK REVDAT 3 13-JUL-11 3IRB 1 VERSN REVDAT 2 10-NOV-10 3IRB 1 JRNL REVDAT 1 01-SEP-09 3IRB 0 SPRSDE 01-SEP-09 3IRB 2GNR JRNL AUTH S.S.KRISHNA,L.ARAVIND,C.BAKOLITSA,J.CARUTHERS,D.CARLTON, JRNL AUTH 2 M.D.MILLER,P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,H.J.CHIU, JRNL AUTH 3 T.CLAYTON,M.C.DELLER,L.DUAN,J.FEUERHELM,J.C.GRANT,G.W.HAN, JRNL AUTH 4 L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,A.KUMAR, JRNL AUTH 5 D.MARCIANO,D.MCMULLAN,A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH, JRNL AUTH 6 R.REYES,C.L.RIFE,H.VAN DEN BEDEM,D.WEEKES,Q.XU,K.O.HODGSON, JRNL AUTH 7 J.WOOLEY,M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY, JRNL AUTH 8 I.A.WILSON JRNL TITL THE STRUCTURE OF SSO2064, THE FIRST REPRESENTATIVE OF PFAM JRNL TITL 2 FAMILY PF01796, REVEALS A NOVEL TWO-DOMAIN ZINC-RIBBON JRNL TITL 3 OB-FOLD ARCHITECTURE WITH A POTENTIAL ACYL-COA-BINDING ROLE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1160 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944206 JRNL DOI 10.1107/S1744309110002514 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0099 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2275 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1518 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3098 ; 1.408 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3695 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 5.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;31.355 ;24.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;11.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.629 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2565 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 479 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1375 ; 1.846 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 561 ; 0.531 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2213 ; 3.194 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 900 ; 5.467 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 876 ; 8.230 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 144 REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4830 30.3980 13.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.0225 T22: 0.0114 REMARK 3 T33: 0.0278 T12: -0.0043 REMARK 3 T13: -0.0102 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.4098 L22: 1.6983 REMARK 3 L33: 1.1612 L12: -0.5330 REMARK 3 L13: 0.1129 L23: -0.4950 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0112 S13: -0.0286 REMARK 3 S21: 0.0232 S22: 0.0009 S23: -0.0829 REMARK 3 S31: -0.0886 S32: 0.0937 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 144 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4430 20.2460 26.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.0503 REMARK 3 T33: 0.0322 T12: -0.0384 REMARK 3 T13: 0.0004 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3983 L22: 0.6475 REMARK 3 L33: 2.2305 L12: 0.0278 REMARK 3 L13: 0.5339 L23: -0.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.0154 S13: -0.0266 REMARK 3 S21: 0.0269 S22: 0.0359 S23: 0.0383 REMARK 3 S31: 0.0766 S32: -0.1429 S33: -0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ZINC REMARK 3 IONS ARE MODELED IN THE CONSERVED RUBREDOXIN DOMAIN ZINC BINDING REMARK 3 SITE IN EACH CHAIN. THE PRESENCE OF ZINC IS SUPPORTED BY X-RAY REMARK 3 FLUORESCENCE EXCITATION AND WAVELENGTH SCANS, ANOMALOUS REMARK 3 DIFFERENCE FOURIERS AND COORDINATION GEOMETRY. 5. ACETATE (ACY) REMARK 3 AND SULFATE IONS (SO4) FROM THE CRYSTALLIZATION CONDITIONS ARE REMARK 3 MODELED. REMARK 4 REMARK 4 3IRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370,0.979386,0.979170 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 26.939 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.056 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M (NH4)2SO4, 0.1M ACETATE PH 4.6, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.70000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.85000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.55000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.70000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.55000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. CRYSTAL PACKING SUGGESTS A REMARK 300 POSSIBLE DIMER OR TETRAMER IN THE CRYSTAL. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.17000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.70000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 TRP A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 TRP B 3 REMARK 465 GLU B 4 REMARK 465 LYS B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 9 REMARK 465 VAL B 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 40 CE NZ REMARK 470 LYS A 69 NZ REMARK 470 LYS A 97 CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 131 CD CE NZ REMARK 470 GLU B 33 CD OE1 OE2 REMARK 470 LYS B 40 CD CE NZ REMARK 470 LYS B 69 CD CE NZ REMARK 470 LYS B 97 NZ REMARK 470 LYS B 125 NZ REMARK 470 LYS B 129 CD CE NZ REMARK 470 LYS B 131 CD CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 106.0 REMARK 620 3 CYS A 63 SG 108.2 111.8 REMARK 620 4 CYS A 66 SG 112.1 104.5 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 49 SG REMARK 620 2 CYS B 52 SG 109.0 REMARK 620 3 CYS B 63 SG 107.9 108.1 REMARK 620 4 CYS B 66 SG 111.2 104.8 115.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 361217 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQ/G. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3IRB A 1 144 UNP Q97WQ4 Q97WQ4_SULSO 1 144 DBREF 3IRB B 1 144 UNP Q97WQ4 Q97WQ4_SULSO 1 144 SEQADV 3IRB GLY A 0 UNP Q97WQ4 EXPRESSION TAG SEQADV 3IRB GLY B 0 UNP Q97WQ4 EXPRESSION TAG SEQRES 1 A 145 GLY MSE SER TRP GLU LYS SER GLY LYS GLU GLY SER LEU SEQRES 2 A 145 LEU ARG TRP TYR ASP VAL MSE GLU ALA GLU ARG TYR GLU SEQRES 3 A 145 TYR THR VAL GLY PRO ALA GLY GLU GLN PHE PHE ASN GLY SEQRES 4 A 145 LEU LYS GLN ASN LYS ILE ILE GLY SER LYS CYS SER LYS SEQRES 5 A 145 CYS GLY ARG ILE PHE VAL PRO ALA ARG SER TYR CYS GLU SEQRES 6 A 145 HIS CYS PHE VAL LYS ILE GLU ASN TYR VAL GLU ILE ASN SEQRES 7 A 145 LYS ASP GLU ALA TYR VAL ASP SER TYR THR ILE ILE TYR SEQRES 8 A 145 ASN ASP ASP GLU GLY ASN LYS LEU ALA GLN PRO VAL TYR SEQRES 9 A 145 ILE ALA LEU ILE ARG PHE PRO ASN ILE GLU GLY GLY LEU SEQRES 10 A 145 LEU CYS TYR ALA GLU GLY ASN VAL LYS VAL GLY ALA LYS SEQRES 11 A 145 ALA LYS ILE LEU SER PHE GLN TRP PRO LEU ARG VAL LYS SEQRES 12 A 145 VAL ASP SEQRES 1 B 145 GLY MSE SER TRP GLU LYS SER GLY LYS GLU GLY SER LEU SEQRES 2 B 145 LEU ARG TRP TYR ASP VAL MSE GLU ALA GLU ARG TYR GLU SEQRES 3 B 145 TYR THR VAL GLY PRO ALA GLY GLU GLN PHE PHE ASN GLY SEQRES 4 B 145 LEU LYS GLN ASN LYS ILE ILE GLY SER LYS CYS SER LYS SEQRES 5 B 145 CYS GLY ARG ILE PHE VAL PRO ALA ARG SER TYR CYS GLU SEQRES 6 B 145 HIS CYS PHE VAL LYS ILE GLU ASN TYR VAL GLU ILE ASN SEQRES 7 B 145 LYS ASP GLU ALA TYR VAL ASP SER TYR THR ILE ILE TYR SEQRES 8 B 145 ASN ASP ASP GLU GLY ASN LYS LEU ALA GLN PRO VAL TYR SEQRES 9 B 145 ILE ALA LEU ILE ARG PHE PRO ASN ILE GLU GLY GLY LEU SEQRES 10 B 145 LEU CYS TYR ALA GLU GLY ASN VAL LYS VAL GLY ALA LYS SEQRES 11 B 145 ALA LYS ILE LEU SER PHE GLN TRP PRO LEU ARG VAL LYS SEQRES 12 B 145 VAL ASP MODRES 3IRB MSE A 19 MET SELENOMETHIONINE MODRES 3IRB MSE B 19 MET SELENOMETHIONINE HET MSE A 19 8 HET MSE B 19 8 HET ZN A 201 1 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 208 5 HET SO4 A 209 5 HET ZN B 201 1 HET ACY B 202 4 HET ACY B 203 4 HET SO4 B 206 5 HET SO4 B 207 5 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 6(O4 S 2-) FORMUL 9 ACY 2(C2 H4 O2) FORMUL 13 HOH *201(H2 O) HELIX 1 1 GLY A 10 VAL A 28 1 19 HELIX 2 2 VAL A 28 GLN A 41 1 14 HELIX 3 3 ASN A 77 ALA A 81 5 5 HELIX 4 4 SER B 11 GLU B 25 1 15 HELIX 5 5 GLY B 29 GLN B 41 1 13 HELIX 6 6 ASN B 77 ALA B 81 5 5 SHEET 1 A 4 ASN A 72 GLU A 75 0 SHEET 2 A 4 ILE A 45 LYS A 48 -1 N GLY A 46 O VAL A 74 SHEET 3 A 4 ILE A 55 VAL A 57 -1 O PHE A 56 N SER A 47 SHEET 4 A 4 GLU A 113 GLY A 114 1 O GLU A 113 N ILE A 55 SHEET 1 B 2 TYR A 62 CYS A 63 0 SHEET 2 B 2 VAL A 68 LYS A 69 -1 O VAL A 68 N CYS A 63 SHEET 1 C 5 TYR A 82 ASN A 91 0 SHEET 2 C 5 LYS A 97 ARG A 108 -1 O LEU A 106 N ASP A 84 SHEET 3 C 5 LEU A 116 GLY A 122 -1 O CYS A 118 N ALA A 105 SHEET 4 C 5 ARG A 140 VAL A 143 1 O VAL A 141 N TYR A 119 SHEET 5 C 5 LYS A 131 SER A 134 -1 N LYS A 131 O LYS A 142 SHEET 1 D 4 ASN B 72 ILE B 76 0 SHEET 2 D 4 ILE B 44 LYS B 48 -1 N ILE B 44 O ILE B 76 SHEET 3 D 4 ILE B 55 VAL B 57 -1 O PHE B 56 N SER B 47 SHEET 4 D 4 GLU B 113 GLY B 114 1 O GLU B 113 N ILE B 55 SHEET 1 E 5 TYR B 82 ASN B 91 0 SHEET 2 E 5 LYS B 97 ARG B 108 -1 O LEU B 98 N TYR B 90 SHEET 3 E 5 LEU B 116 GLY B 122 -1 O LEU B 116 N ILE B 107 SHEET 4 E 5 ARG B 140 VAL B 143 1 O VAL B 143 N GLU B 121 SHEET 5 E 5 LYS B 131 SER B 134 -1 N LEU B 133 O ARG B 140 LINK C VAL A 18 N MSE A 19 1555 1555 1.33 LINK C MSE A 19 N GLU A 20 1555 1555 1.32 LINK C VAL B 18 N MSE B 19 1555 1555 1.32 LINK C MSE B 19 N GLU B 20 1555 1555 1.33 LINK SG CYS A 49 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 52 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 63 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 66 ZN ZN A 201 1555 1555 2.29 LINK SG CYS B 49 ZN ZN B 201 1555 1555 2.29 LINK SG CYS B 52 ZN ZN B 201 1555 1555 2.35 LINK SG CYS B 63 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 66 ZN ZN B 201 1555 1555 2.29 CISPEP 1 VAL A 57 PRO A 58 0 -9.83 CISPEP 2 VAL A 57 PRO A 58 0 -9.49 CISPEP 3 TRP A 137 PRO A 138 0 -5.99 CISPEP 4 VAL B 57 PRO B 58 0 -8.42 CISPEP 5 TRP B 137 PRO B 138 0 -1.50 SITE 1 AC1 4 CYS A 49 CYS A 52 CYS A 63 CYS A 66 SITE 1 AC2 6 ILE A 89 TYR A 90 ASN A 91 LYS A 125 SITE 2 AC2 6 HOH A 307 HOH A 339 SITE 1 AC3 5 SER A 134 ARG A 140 GLY B 10 SER B 11 SITE 2 AC3 5 ARG B 14 SITE 1 AC4 7 ASP A 84 ARG A 108 HOH A 342 HOH A 403 SITE 2 AC4 7 HOH A 404 ARG B 54 HIS B 65 SITE 1 AC5 4 ARG A 60 ARG B 108 GLU B 113 HOH B 392 SITE 1 AC6 4 CYS B 49 CYS B 52 CYS B 63 CYS B 66 SITE 1 AC7 7 PRO A 30 SER A 61 LYS A 69 SER B 85 SITE 2 AC7 7 TYR B 86 VAL B 126 SO4 B 207 SITE 1 AC8 2 HOH A 358 HOH B 373 SITE 1 AC9 9 ARG A 14 GLY B 29 PRO B 30 ALA B 31 SITE 2 AC9 9 GLY B 32 ARG B 60 SER B 61 HOH B 338 SITE 3 AC9 9 HOH B 391 SITE 1 BC1 5 TYR B 86 LYS B 125 VAL B 126 ACY B 202 SITE 2 BC1 5 HOH B 290 CRYST1 75.170 75.170 115.400 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013303 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008666 0.00000