HEADER SUGAR BINDING PROTEIN 31-AUG-09 3IV0 TITLE CRYSTAL STRUCTURE OF SUSD HOMOLOG (NP_809186.1) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 1.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_0273, NP_809186.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_809186.1, SUSD HOMOLOG, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 RAGB, SUSD AND HYPOTHETICAL PROTEINS, UNKNOWN FUNCTION, SUGAR KEYWDS 4 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3IV0 1 REMARK SEQADV REVDAT 4 24-JUL-19 3IV0 1 REMARK LINK REVDAT 3 01-NOV-17 3IV0 1 REMARK REVDAT 2 24-NOV-09 3IV0 1 TITLE REVDAT 1 08-SEP-09 3IV0 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD HOMOLOG (NP_809186.1) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 87959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4361 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 336 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 605 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4012 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2695 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5462 ; 1.417 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6521 ; 0.859 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ;10.091 ; 5.039 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;34.396 ;23.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;11.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.620 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4645 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 890 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 963 ; 0.268 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3164 ; 0.216 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2088 ; 0.196 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1985 ; 0.092 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 780 ; 0.189 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.085 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.247 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.223 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2507 ; 1.522 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 988 ; 0.374 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3955 ; 2.239 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1745 ; 3.654 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1507 ; 4.978 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED REMARK 3 IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3.CHLORIDE ANION FROM CRYSTALLIZATION AND REMARK 3 ETHYLENE GLYCOL FROM CRYOPROTECTANT ARE MODELED IN THE STRUCTURE, REMARK 3 RESPECTIVELY. 4.RESIDUE 191 IS CHEMICALLY MODIFIED TO S- REMARK 3 HYDROXYCYSTINE WITH ELECTRON DENSITY SUPPORT. REMARK 4 REMARK 4 3IV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97848,0.97787 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25900 REMARK 200 R SYM FOR SHELL (I) : 0.25900 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NANO3, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.18500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 LYS A 29 REMARK 465 LEU A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 ASP A 33 REMARK 465 TYR A 174 REMARK 465 ASN A 175 REMARK 465 GLU A 176 REMARK 465 ALA A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 178 CG CD REMARK 470 LEU A 179 CG CD1 CD2 REMARK 470 GLN A 244 CD OE1 NE2 REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 PHE A 296 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 297 CG OD1 ND2 REMARK 470 ARG A 487 CD NE CZ NH1 NH2 REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 ASN A 492 CG OD1 ND2 REMARK 470 THR A 494 OG1 CG2 REMARK 470 GLN A 495 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 169 CE2 TYR A 169 CD2 0.110 REMARK 500 MSE A 302 SE MSE A 302 CE -0.534 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 166 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 169 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 60 -38.66 -134.16 REMARK 500 PRO A 64 47.74 -84.52 REMARK 500 PRO A 64 47.74 -81.23 REMARK 500 TYR A 312 -39.14 -139.42 REMARK 500 ASP A 339 108.18 -173.56 REMARK 500 ASN A 406 72.72 -164.27 REMARK 500 ASN A 493 110.25 -160.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396192 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 24-503 OF THE FULL LENGTH PROTEIN. DBREF 3IV0 A 24 503 UNP Q8AB38 Q8AB38_BACTN 24 503 SEQADV 3IV0 GLY A 0 UNP Q8AB38 EXPRESSION TAG SEQRES 1 A 481 GLY ASN LYS SER GLU ASP LYS LEU SER GLY ASP ASP PHE SEQRES 2 A 481 TRP ALA GLN GLY ASN GLU THR ASN ALA GLU ALA PHE LEU SEQRES 3 A 481 LEU SER ILE TYR ASN SER PHE ARG ASN ALA THR MSE SER SEQRES 4 A 481 GLN ARG PRO PHE LEU THR TYR SER GLY ASP MSE ARG CYS SEQRES 5 A 481 ALA PRO ILE THR ALA TYR SER THR GLY ASP LYS TYR VAL SEQRES 6 A 481 ALA TYR LEU ALA ASN ASN ASP MSE GLY GLU LEU ARG ASN SEQRES 7 A 481 THR TYR PRO ASP ASP ALA ARG GLY GLY LEU ILE MSE GLN SEQRES 8 A 481 TRP ASP VAL PHE TYR THR ALA ILE GLN ASP ALA ASN ILE SEQRES 9 A 481 LEU LEU ALA GLU ILE ASP LYS VAL PRO GLY MSE ASP GLU SEQRES 10 A 481 LEU LYS ARG SER ARG PHE LYS ALA GLU ALA ILE PHE MSE SEQRES 11 A 481 ARG SER LEU SER TYR PHE PHE ILE VAL ARG ALA PHE GLY SEQRES 12 A 481 ASP VAL PRO TYR TYR THR ASN ALA TYR ASN GLU ALA PRO SEQRES 13 A 481 LEU PRO ARG THR ASN MSE VAL ILE VAL LEU GLN ASN CSO SEQRES 14 A 481 LEU ALA ASP LEU GLN PRO LEU LEU ASP ASP ASP PRO GLY SEQRES 15 A 481 ALA GLU VAL LEU PRO TRP SER TYR SER SER TYR SER SER SEQRES 16 A 481 LYS GLY ILE ARG ALA SER ARG GLY SER VAL ILE ALA LEU SEQRES 17 A 481 MSE MSE HIS ILE ASN LEU TRP LEU VAL GLN PHE ASP ALA SEQRES 18 A 481 GLN ASN LYS GLU GLN TYR TYR ARG ASN VAL VAL SER LEU SEQRES 19 A 481 GLY GLU GLU LEU GLU ARG ASN ASN GLY ALA TYR SER LEU SEQRES 20 A 481 LEU ASP ILE ASN ARG SER SER VAL ILE PHE ALA GLY GLY SEQRES 21 A 481 SER ASP GLU GLY LEU PHE GLU ILE ALA GLN ASN ILE ASN SEQRES 22 A 481 PHE ASN GLU ILE PHE MSE MSE ASN ALA LYS PHE SER ASP SEQRES 23 A 481 ASN VAL SER TYR SER CYS LEU ASN LYS SER MSE PRO LEU SEQRES 24 A 481 PHE CYS TYR SER GLY ASP TYR LEU MSE THR LEU PHE PRO SEQRES 25 A 481 MSE TYR GLU ASP ASP ALA ARG LYS GLU LEU TRP PHE ASP SEQRES 26 A 481 GLU LYS ILE TYR SER THR SER VAL SER SER SER ALA PRO SEQRES 27 A 481 LYS GLU ILE LYS LYS PHE TRP ASN ILE ASP THR TYR GLY SEQRES 28 A 481 ASN GLY THR ILE THR SER ASN SER GLY ASN GLN ILE VAL SEQRES 29 A 481 PHE ARG TYR ALA GLY ALA LEU LEU LEU TYR ALA GLU ALA SEQRES 30 A 481 LEU ALA ALA LEU GLY THR ASN ASP THR LYS ALA CYS GLU SEQRES 31 A 481 LEU LEU ASN ARG VAL ARG ASN ARG ALA HIS ALA SER GLU SEQRES 32 A 481 ILE ASN THR SER GLY SER GLU LEU MSE ASP ALA ILE PHE SEQRES 33 A 481 TRP GLU ARG CYS ARG GLU LEU ILE GLY GLU GLY HIS TYR SEQRES 34 A 481 TYR TYR ASP LEU VAL ARG THR GLY LYS VAL TYR ASN ARG SEQRES 35 A 481 ASN TYR CYS MSE ASN PRO MSE THR ARG THR ASN PHE ASN SEQRES 36 A 481 VAL GLY ALA TRP THR TRP PRO ILE HIS ARG ASN ALA LEU SEQRES 37 A 481 LYS ASN ASN THR GLN ILE GLY LEU ASN LEU PHE TRP GLU MODRES 3IV0 MSE A 60 MET SELENOMETHIONINE MODRES 3IV0 MSE A 72 MET SELENOMETHIONINE MODRES 3IV0 MSE A 95 MET SELENOMETHIONINE MODRES 3IV0 MSE A 112 MET SELENOMETHIONINE MODRES 3IV0 MSE A 137 MET SELENOMETHIONINE MODRES 3IV0 MSE A 152 MET SELENOMETHIONINE MODRES 3IV0 MSE A 184 MET SELENOMETHIONINE MODRES 3IV0 CSO A 191 CYS S-HYDROXYCYSTEINE MODRES 3IV0 MSE A 231 MET SELENOMETHIONINE MODRES 3IV0 MSE A 232 MET SELENOMETHIONINE MODRES 3IV0 MSE A 301 MET SELENOMETHIONINE MODRES 3IV0 MSE A 302 MET SELENOMETHIONINE MODRES 3IV0 MSE A 319 MET SELENOMETHIONINE MODRES 3IV0 MSE A 330 MET SELENOMETHIONINE MODRES 3IV0 MSE A 335 MET SELENOMETHIONINE MODRES 3IV0 MSE A 434 MET SELENOMETHIONINE MODRES 3IV0 MSE A 468 MET SELENOMETHIONINE MODRES 3IV0 MSE A 471 MET SELENOMETHIONINE HET MSE A 60 8 HET MSE A 72 8 HET MSE A 95 8 HET MSE A 112 8 HET MSE A 137 8 HET MSE A 152 8 HET MSE A 184 8 HET CSO A 191 7 HET MSE A 231 8 HET MSE A 232 16 HET MSE A 301 8 HET MSE A 302 16 HET MSE A 319 16 HET MSE A 330 16 HET MSE A 335 16 HET MSE A 434 8 HET MSE A 468 16 HET MSE A 471 8 HET CL A 1 1 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HETNAM MSE SELENOMETHIONINE HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 CL CL 1- FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *605(H2 O) HELIX 1 1 ASN A 40 MSE A 60 1 21 HELIX 2 2 PRO A 64 ASP A 71 1 8 HELIX 3 3 LYS A 85 ASN A 92 1 8 HELIX 4 4 ASP A 94 TYR A 102 1 9 HELIX 5 5 TRP A 114 ILE A 131 1 18 HELIX 6 6 ASP A 132 VAL A 134 5 3 HELIX 7 7 ASP A 138 GLY A 165 1 28 HELIX 8 8 ASN A 183 ASP A 201 1 19 HELIX 9 9 SER A 223 ASP A 242 1 20 HELIX 10 10 ASN A 245 GLU A 261 1 17 HELIX 11 11 ASP A 271 ASN A 273 5 3 HELIX 12 12 ARG A 274 GLY A 281 1 8 HELIX 13 13 ASN A 293 ASN A 297 5 5 HELIX 14 14 MSE A 301 ALA A 304 5 4 HELIX 15 15 LYS A 305 VAL A 310 1 6 HELIX 16 16 TYR A 312 ASN A 316 5 5 HELIX 17 17 SER A 325 PHE A 333 1 9 HELIX 18 18 ASP A 339 PHE A 346 1 8 HELIX 19 19 TYR A 389 GLY A 404 1 16 HELIX 20 20 ASN A 406 ALA A 421 1 16 HELIX 21 21 SER A 429 LEU A 445 1 17 HELIX 22 22 HIS A 450 THR A 458 1 9 HELIX 23 23 GLY A 459 ASN A 463 5 5 HELIX 24 24 THR A 472 VAL A 478 1 7 HELIX 25 25 ARG A 487 ASN A 493 1 7 HELIX 26 26 ASN A 499 GLU A 503 5 5 SHEET 1 A 2 ILE A 77 ALA A 79 0 SHEET 2 A 2 PHE A 322 TYR A 324 -1 O CYS A 323 N THR A 78 SHEET 1 B 2 GLY A 286 ILE A 290 0 SHEET 2 B 2 GLN A 384 ARG A 388 -1 O PHE A 387 N LEU A 287 SHEET 1 C 2 ASP A 370 TYR A 372 0 SHEET 2 C 2 THR A 376 THR A 378 -1 O THR A 378 N ASP A 370 LINK C THR A 59 N MSE A 60 1555 1555 1.35 LINK C MSE A 60 N SER A 61 1555 1555 1.33 LINK C ASP A 71 N MSE A 72 1555 1555 1.32 LINK C MSE A 72 N ARG A 73 1555 1555 1.31 LINK C ASP A 94 N MSE A 95 1555 1555 1.34 LINK C MSE A 95 N GLY A 96 1555 1555 1.32 LINK C ILE A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N GLN A 113 1555 1555 1.33 LINK C GLY A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N ASP A 138 1555 1555 1.32 LINK C PHE A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N ARG A 153 1555 1555 1.31 LINK C ASN A 183 N MSE A 184 1555 1555 1.32 LINK C MSE A 184 N VAL A 185 1555 1555 1.33 LINK C ASN A 190 N CSO A 191 1555 1555 1.34 LINK C CSO A 191 N LEU A 192 1555 1555 1.30 LINK C LEU A 230 N MSE A 231 1555 1555 1.32 LINK C MSE A 231 N AMSE A 232 1555 1555 1.34 LINK C MSE A 231 N BMSE A 232 1555 1555 1.33 LINK C AMSE A 232 N HIS A 233 1555 1555 1.34 LINK C BMSE A 232 N HIS A 233 1555 1555 1.33 LINK C PHE A 300 N MSE A 301 1555 1555 1.32 LINK C MSE A 301 N AMSE A 302 1555 1555 1.32 LINK C MSE A 301 N BMSE A 302 1555 1555 1.34 LINK C AMSE A 302 N ASN A 303 1555 1555 1.32 LINK C BMSE A 302 N ASN A 303 1555 1555 1.33 LINK C SER A 318 N AMSE A 319 1555 1555 1.34 LINK C SER A 318 N BMSE A 319 1555 1555 1.33 LINK C AMSE A 319 N PRO A 320 1555 1555 1.35 LINK C BMSE A 319 N PRO A 320 1555 1555 1.34 LINK C LEU A 329 N AMSE A 330 1555 1555 1.33 LINK C LEU A 329 N BMSE A 330 1555 1555 1.33 LINK C AMSE A 330 N THR A 331 1555 1555 1.33 LINK C BMSE A 330 N THR A 331 1555 1555 1.33 LINK C APRO A 334 N AMSE A 335 1555 1555 1.34 LINK C BPRO A 334 N BMSE A 335 1555 1555 1.33 LINK C AMSE A 335 N TYR A 336 1555 1555 1.34 LINK C BMSE A 335 N TYR A 336 1555 1555 1.33 LINK C LEU A 433 N MSE A 434 1555 1555 1.31 LINK C MSE A 434 N ASP A 435 1555 1555 1.32 LINK C CYS A 467 N AMSE A 468 1555 1555 1.32 LINK C CYS A 467 N BMSE A 468 1555 1555 1.33 LINK C AMSE A 468 N ASN A 469 1555 1555 1.34 LINK C BMSE A 468 N ASN A 469 1555 1555 1.34 LINK C PRO A 470 N MSE A 471 1555 1555 1.33 LINK C MSE A 471 N THR A 472 1555 1555 1.33 SITE 1 AC1 4 HOH A 16 HIS A 233 GLY A 391 ARG A 441 SITE 1 AC2 6 TRP A 114 TYR A 118 TYR A 170 ASN A 493 SITE 2 AC2 6 HOH A 646 HOH A 937 SITE 1 AC3 8 GLY A 165 ASP A 166 ARG A 181 GLY A 479 SITE 2 AC3 8 TRP A 481 HOH A 651 HOH A 812 HOH A 960 SITE 1 AC4 5 GLN A 196 MSE A 231 SER A 255 HOH A 594 SITE 2 AC4 5 HOH A 661 SITE 1 AC5 4 MSE A 302 ASP A 308 ASN A 309 LYS A 317 SITE 1 AC6 6 ASN A 415 ARG A 416 ASN A 419 HOH A 710 SITE 2 AC6 6 HOH A 717 HOH A 864 CRYST1 50.650 74.370 67.375 90.00 111.64 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019744 0.000000 0.007831 0.00000 SCALE2 0.000000 0.013446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015967 0.00000