data_3IV4 # _entry.id 3IV4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IV4 RCSB RCSB054902 WWPDB D_1000054902 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC23140 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IV4 _pdbx_database_status.recvd_initial_deposition_date 2009-08-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fan, Y.' 1 'Xu, X.' 2 'Cui, H.' 3 'Ng, J.' 4 'Savchenko, A.' 5 'Joachimiak, A.' 6 'Edwards, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'The crystal structure of a putative oxidoreductase with a thioredoxin fold' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fan, Y.' 1 primary 'Xu, X.' 2 primary 'Cui, H.' 3 primary 'Ng, J.' 4 primary 'Savchenko, A.' 5 primary 'Joachimiak, A.' 6 primary 'Edwards, A.' 7 # _cell.entry_id 3IV4 _cell.length_a 57.830 _cell.length_b 33.078 _cell.length_c 47.325 _cell.angle_alpha 90.00 _cell.angle_beta 102.71 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IV4 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative oxidoreductase' 13234.326 1 ? ? ? ? 2 water nat water 18.015 142 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative uncharacterized protein SA0696' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;NLYFQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYERD(MSE)DGYYLIVQQERDLSDYIAKKT NVKHESPQAFYFVNGE(MSE)VWNRDHGDINVSSLAQAEE ; _entity_poly.pdbx_seq_one_letter_code_can ;NLYFQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKH ESPQAFYFVNGEMVWNRDHGDINVSSLAQAEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC23140 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 TYR n 1 4 PHE n 1 5 GLN n 1 6 GLY n 1 7 VAL n 1 8 ALA n 1 9 ILE n 1 10 LYS n 1 11 LEU n 1 12 SER n 1 13 SER n 1 14 ILE n 1 15 ASP n 1 16 GLN n 1 17 PHE n 1 18 GLU n 1 19 GLN n 1 20 VAL n 1 21 ILE n 1 22 GLU n 1 23 GLU n 1 24 ASN n 1 25 LYS n 1 26 TYR n 1 27 VAL n 1 28 PHE n 1 29 VAL n 1 30 LEU n 1 31 LYS n 1 32 HIS n 1 33 SER n 1 34 GLU n 1 35 THR n 1 36 CYS n 1 37 PRO n 1 38 ILE n 1 39 SER n 1 40 ALA n 1 41 ASN n 1 42 ALA n 1 43 TYR n 1 44 ASP n 1 45 GLN n 1 46 PHE n 1 47 ASN n 1 48 LYS n 1 49 PHE n 1 50 LEU n 1 51 TYR n 1 52 GLU n 1 53 ARG n 1 54 ASP n 1 55 MSE n 1 56 ASP n 1 57 GLY n 1 58 TYR n 1 59 TYR n 1 60 LEU n 1 61 ILE n 1 62 VAL n 1 63 GLN n 1 64 GLN n 1 65 GLU n 1 66 ARG n 1 67 ASP n 1 68 LEU n 1 69 SER n 1 70 ASP n 1 71 TYR n 1 72 ILE n 1 73 ALA n 1 74 LYS n 1 75 LYS n 1 76 THR n 1 77 ASN n 1 78 VAL n 1 79 LYS n 1 80 HIS n 1 81 GLU n 1 82 SER n 1 83 PRO n 1 84 GLN n 1 85 ALA n 1 86 PHE n 1 87 TYR n 1 88 PHE n 1 89 VAL n 1 90 ASN n 1 91 GLY n 1 92 GLU n 1 93 MSE n 1 94 VAL n 1 95 TRP n 1 96 ASN n 1 97 ARG n 1 98 ASP n 1 99 HIS n 1 100 GLY n 1 101 ASP n 1 102 ILE n 1 103 ASN n 1 104 VAL n 1 105 SER n 1 106 SER n 1 107 LEU n 1 108 ALA n 1 109 GLN n 1 110 ALA n 1 111 GLU n 1 112 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SA0696 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain N315 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 158879 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain pPK1037 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7A6S3_STAAN _struct_ref.pdbx_db_accession Q7A6S3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFY FVNGEMVWNRDHGDINVSSLAQAEE ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IV4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7A6S3 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 106 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IV4 ASN A 1 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' -5 1 1 3IV4 LEU A 2 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' -4 2 1 3IV4 TYR A 3 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' -3 3 1 3IV4 PHE A 4 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' -2 4 1 3IV4 GLN A 5 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' -1 5 1 3IV4 GLY A 6 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' 0 6 1 3IV4 VAL A 7 ? UNP Q7A6S3 ? ? 'EXPRESSION TAG' 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IV4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.67 _exptl_crystal.density_percent_sol 26.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.2M MgCl2, 25% PEG3350, 1/10 V8, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2009-06-07 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97937 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97937 # _reflns.entry_id 3IV4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.50 _reflns.number_obs 14118 _reflns.number_all 14118 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 51.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.53 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.256 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.64 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 689 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3IV4 _refine.ls_number_reflns_obs 13408 _refine.ls_number_reflns_all 13408 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.18 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.45 _refine.ls_R_factor_obs 0.15436 _refine.ls_R_factor_all 0.15436 _refine.ls_R_factor_R_work 0.15250 _refine.ls_R_factor_R_free 0.18988 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 708 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 17.218 _refine.aniso_B[1][1] 0.95 _refine.aniso_B[2][2] -0.19 _refine.aniso_B[3][3] -0.84 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.16 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.188 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.058 _refine.overall_SU_B 3.371 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 927 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1069 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 46.18 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1164 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.271 1.931 ? 1591 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.676 5.000 ? 149 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.542 25.672 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.890 15.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.148 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 164 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 946 'X-RAY DIFFRACTION' ? r_mcbond_it 0.897 1.500 ? 695 'X-RAY DIFFRACTION' ? r_mcangle_it 1.557 2.000 ? 1144 'X-RAY DIFFRACTION' ? r_scbond_it 2.339 3.000 ? 469 'X-RAY DIFFRACTION' ? r_scangle_it 3.674 4.500 ? 447 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.330 3.000 ? 1164 'X-RAY DIFFRACTION' ? r_sphericity_free 4.127 3.000 ? 142 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.675 3.000 ? 1130 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.499 _refine_ls_shell.d_res_low 1.538 _refine_ls_shell.number_reflns_R_work 963 _refine_ls_shell.R_factor_R_work 0.166 _refine_ls_shell.percent_reflns_obs 98.64 _refine_ls_shell.R_factor_R_free 0.257 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3IV4 _struct.title 'A putative oxidoreductase with a thioredoxin fold' _struct.pdbx_descriptor 'Putative oxidoreductase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IV4 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;APC23140, meticillin-resistant Staphylococcus aureus, oxidoreductase, thioredoxin fold, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 3 ? GLY A 6 ? TYR A -3 GLY A 0 5 ? 4 HELX_P HELX_P2 2 SER A 13 ? ASN A 24 ? SER A 7 ASN A 18 1 ? 12 HELX_P HELX_P3 3 CYS A 36 ? ASP A 54 ? CYS A 30 ASP A 48 1 ? 19 HELX_P HELX_P4 4 GLU A 65 ? ASN A 77 ? GLU A 59 ASN A 71 1 ? 13 HELX_P HELX_P5 5 GLY A 100 ? ILE A 102 ? GLY A 94 ILE A 96 5 ? 3 HELX_P HELX_P6 6 ASN A 103 ? GLU A 111 ? ASN A 97 GLU A 105 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASP 54 C A ? ? 1_555 A MSE 55 N A ? A ASP 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A ASP 54 C B ? ? 1_555 A MSE 55 N B ? A ASP 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 55 C A ? ? 1_555 A ASP 56 N ? ? A MSE 49 A ASP 50 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 55 C B ? ? 1_555 A ASP 56 N ? ? A MSE 49 A ASP 50 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A GLU 92 C A ? ? 1_555 A MSE 93 N A ? A GLU 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.321 ? covale6 covale ? ? A GLU 92 C B ? ? 1_555 A MSE 93 N B ? A GLU 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 93 C A ? ? 1_555 A VAL 94 N ? ? A MSE 87 A VAL 88 1_555 ? ? ? ? ? ? ? 1.314 ? covale8 covale ? ? A MSE 93 C B ? ? 1_555 A VAL 94 N ? ? A MSE 87 A VAL 88 1_555 ? ? ? ? ? ? ? 1.348 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 82 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 76 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 83 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 77 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.84 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 8 ? LYS A 10 ? ALA A 2 LYS A 4 A 2 GLY A 57 ? ILE A 61 ? GLY A 51 ILE A 55 A 3 TYR A 26 ? HIS A 32 ? TYR A 20 HIS A 26 A 4 GLN A 84 ? VAL A 89 ? GLN A 78 VAL A 83 A 5 GLU A 92 ? ASP A 98 ? GLU A 86 ASP A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 9 ? N ILE A 3 O GLY A 57 ? O GLY A 51 A 2 3 O LEU A 60 ? O LEU A 54 N HIS A 32 ? N HIS A 26 A 3 4 N VAL A 27 ? N VAL A 21 O PHE A 88 ? O PHE A 82 A 4 5 N ALA A 85 ? N ALA A 79 O ARG A 97 ? O ARG A 91 # _database_PDB_matrix.entry_id 3IV4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IV4 _atom_sites.fract_transf_matrix[1][1] 0.017292 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003899 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030232 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021661 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 -5 -5 ASN ASN A . n A 1 2 LEU 2 -4 -4 LEU LEU A . n A 1 3 TYR 3 -3 -3 TYR TYR A . n A 1 4 PHE 4 -2 -2 PHE PHE A . n A 1 5 GLN 5 -1 -1 GLN GLN A . n A 1 6 GLY 6 0 0 GLY GLY A . n A 1 7 VAL 7 1 1 VAL VAL A . n A 1 8 ALA 8 2 2 ALA ALA A . n A 1 9 ILE 9 3 3 ILE ILE A . n A 1 10 LYS 10 4 4 LYS LYS A . n A 1 11 LEU 11 5 5 LEU LEU A . n A 1 12 SER 12 6 6 SER SER A . n A 1 13 SER 13 7 7 SER SER A . n A 1 14 ILE 14 8 8 ILE ILE A . n A 1 15 ASP 15 9 9 ASP ASP A . n A 1 16 GLN 16 10 10 GLN GLN A . n A 1 17 PHE 17 11 11 PHE PHE A . n A 1 18 GLU 18 12 12 GLU GLU A . n A 1 19 GLN 19 13 13 GLN GLN A . n A 1 20 VAL 20 14 14 VAL VAL A . n A 1 21 ILE 21 15 15 ILE ILE A . n A 1 22 GLU 22 16 16 GLU GLU A . n A 1 23 GLU 23 17 17 GLU GLU A . n A 1 24 ASN 24 18 18 ASN ASN A . n A 1 25 LYS 25 19 19 LYS LYS A . n A 1 26 TYR 26 20 20 TYR TYR A . n A 1 27 VAL 27 21 21 VAL VAL A . n A 1 28 PHE 28 22 22 PHE PHE A . n A 1 29 VAL 29 23 23 VAL VAL A . n A 1 30 LEU 30 24 24 LEU LEU A . n A 1 31 LYS 31 25 25 LYS LYS A . n A 1 32 HIS 32 26 26 HIS HIS A . n A 1 33 SER 33 27 27 SER SER A . n A 1 34 GLU 34 28 28 GLU GLU A . n A 1 35 THR 35 29 29 THR THR A . n A 1 36 CYS 36 30 30 CYS CYS A . n A 1 37 PRO 37 31 31 PRO PRO A . n A 1 38 ILE 38 32 32 ILE ILE A . n A 1 39 SER 39 33 33 SER SER A . n A 1 40 ALA 40 34 34 ALA ALA A . n A 1 41 ASN 41 35 35 ASN ASN A . n A 1 42 ALA 42 36 36 ALA ALA A . n A 1 43 TYR 43 37 37 TYR TYR A . n A 1 44 ASP 44 38 38 ASP ASP A . n A 1 45 GLN 45 39 39 GLN GLN A . n A 1 46 PHE 46 40 40 PHE PHE A . n A 1 47 ASN 47 41 41 ASN ASN A . n A 1 48 LYS 48 42 42 LYS LYS A . n A 1 49 PHE 49 43 43 PHE PHE A . n A 1 50 LEU 50 44 44 LEU LEU A . n A 1 51 TYR 51 45 45 TYR TYR A . n A 1 52 GLU 52 46 46 GLU GLU A . n A 1 53 ARG 53 47 47 ARG ARG A . n A 1 54 ASP 54 48 48 ASP ASP A . n A 1 55 MSE 55 49 49 MSE MSE A . n A 1 56 ASP 56 50 50 ASP ASP A . n A 1 57 GLY 57 51 51 GLY GLY A . n A 1 58 TYR 58 52 52 TYR TYR A . n A 1 59 TYR 59 53 53 TYR TYR A . n A 1 60 LEU 60 54 54 LEU LEU A . n A 1 61 ILE 61 55 55 ILE ILE A . n A 1 62 VAL 62 56 56 VAL VAL A . n A 1 63 GLN 63 57 57 GLN GLN A . n A 1 64 GLN 64 58 58 GLN GLN A . n A 1 65 GLU 65 59 59 GLU GLU A . n A 1 66 ARG 66 60 60 ARG ARG A . n A 1 67 ASP 67 61 61 ASP ASP A . n A 1 68 LEU 68 62 62 LEU LEU A . n A 1 69 SER 69 63 63 SER SER A . n A 1 70 ASP 70 64 64 ASP ASP A . n A 1 71 TYR 71 65 65 TYR TYR A . n A 1 72 ILE 72 66 66 ILE ILE A . n A 1 73 ALA 73 67 67 ALA ALA A . n A 1 74 LYS 74 68 68 LYS LYS A . n A 1 75 LYS 75 69 69 LYS LYS A . n A 1 76 THR 76 70 70 THR THR A . n A 1 77 ASN 77 71 71 ASN ASN A . n A 1 78 VAL 78 72 72 VAL VAL A . n A 1 79 LYS 79 73 73 LYS LYS A . n A 1 80 HIS 80 74 74 HIS HIS A . n A 1 81 GLU 81 75 75 GLU GLU A . n A 1 82 SER 82 76 76 SER SER A . n A 1 83 PRO 83 77 77 PRO PRO A . n A 1 84 GLN 84 78 78 GLN GLN A . n A 1 85 ALA 85 79 79 ALA ALA A . n A 1 86 PHE 86 80 80 PHE PHE A . n A 1 87 TYR 87 81 81 TYR TYR A . n A 1 88 PHE 88 82 82 PHE PHE A . n A 1 89 VAL 89 83 83 VAL VAL A . n A 1 90 ASN 90 84 84 ASN ASN A . n A 1 91 GLY 91 85 85 GLY GLY A . n A 1 92 GLU 92 86 86 GLU GLU A . n A 1 93 MSE 93 87 87 MSE MSE A . n A 1 94 VAL 94 88 88 VAL VAL A . n A 1 95 TRP 95 89 89 TRP TRP A . n A 1 96 ASN 96 90 90 ASN ASN A . n A 1 97 ARG 97 91 91 ARG ARG A . n A 1 98 ASP 98 92 92 ASP ASP A . n A 1 99 HIS 99 93 93 HIS HIS A . n A 1 100 GLY 100 94 94 GLY GLY A . n A 1 101 ASP 101 95 95 ASP ASP A . n A 1 102 ILE 102 96 96 ILE ILE A . n A 1 103 ASN 103 97 97 ASN ASN A . n A 1 104 VAL 104 98 98 VAL VAL A . n A 1 105 SER 105 99 99 SER SER A . n A 1 106 SER 106 100 100 SER SER A . n A 1 107 LEU 107 101 101 LEU LEU A . n A 1 108 ALA 108 102 102 ALA ALA A . n A 1 109 GLN 109 103 103 GLN GLN A . n A 1 110 ALA 110 104 104 ALA ALA A . n A 1 111 GLU 111 105 105 GLU GLU A . n A 1 112 GLU 112 106 106 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 107 107 HOH HOH A . B 2 HOH 2 108 108 HOH HOH A . B 2 HOH 3 109 109 HOH HOH A . B 2 HOH 4 110 110 HOH HOH A . B 2 HOH 5 111 111 HOH HOH A . B 2 HOH 6 112 112 HOH HOH A . B 2 HOH 7 113 113 HOH HOH A . B 2 HOH 8 114 114 HOH HOH A . B 2 HOH 9 115 115 HOH HOH A . B 2 HOH 10 116 116 HOH HOH A . B 2 HOH 11 117 117 HOH HOH A . B 2 HOH 12 118 118 HOH HOH A . B 2 HOH 13 119 119 HOH HOH A . B 2 HOH 14 120 120 HOH HOH A . B 2 HOH 15 121 121 HOH HOH A . B 2 HOH 16 122 1 HOH HOH A . B 2 HOH 17 123 123 HOH HOH A . B 2 HOH 18 124 124 HOH HOH A . B 2 HOH 19 125 125 HOH HOH A . B 2 HOH 20 126 126 HOH HOH A . B 2 HOH 21 127 127 HOH HOH A . B 2 HOH 22 128 128 HOH HOH A . B 2 HOH 23 129 129 HOH HOH A . B 2 HOH 24 130 2 HOH HOH A . B 2 HOH 25 131 131 HOH HOH A . B 2 HOH 26 132 132 HOH HOH A . B 2 HOH 27 133 133 HOH HOH A . B 2 HOH 28 134 134 HOH HOH A . B 2 HOH 29 135 135 HOH HOH A . B 2 HOH 30 136 3 HOH HOH A . B 2 HOH 31 137 137 HOH HOH A . B 2 HOH 32 138 138 HOH HOH A . B 2 HOH 33 139 4 HOH HOH A . B 2 HOH 34 140 5 HOH HOH A . B 2 HOH 35 141 141 HOH HOH A . B 2 HOH 36 142 142 HOH HOH A . B 2 HOH 37 143 6 HOH HOH A . B 2 HOH 38 144 7 HOH HOH A . B 2 HOH 39 145 145 HOH HOH A . B 2 HOH 40 146 146 HOH HOH A . B 2 HOH 41 147 147 HOH HOH A . B 2 HOH 42 148 8 HOH HOH A . B 2 HOH 43 149 9 HOH HOH A . B 2 HOH 44 150 150 HOH HOH A . B 2 HOH 45 151 10 HOH HOH A . B 2 HOH 46 152 11 HOH HOH A . B 2 HOH 47 153 13 HOH HOH A . B 2 HOH 48 154 14 HOH HOH A . B 2 HOH 49 155 155 HOH HOH A . B 2 HOH 50 156 156 HOH HOH A . B 2 HOH 51 157 157 HOH HOH A . B 2 HOH 52 158 158 HOH HOH A . B 2 HOH 53 159 159 HOH HOH A . B 2 HOH 54 160 160 HOH HOH A . B 2 HOH 55 161 161 HOH HOH A . B 2 HOH 56 162 162 HOH HOH A . B 2 HOH 57 163 163 HOH HOH A . B 2 HOH 58 164 164 HOH HOH A . B 2 HOH 59 165 165 HOH HOH A . B 2 HOH 60 166 166 HOH HOH A . B 2 HOH 61 167 16 HOH HOH A . B 2 HOH 62 168 168 HOH HOH A . B 2 HOH 63 169 169 HOH HOH A . B 2 HOH 64 170 170 HOH HOH A . B 2 HOH 65 171 171 HOH HOH A . B 2 HOH 66 172 172 HOH HOH A . B 2 HOH 67 173 173 HOH HOH A . B 2 HOH 68 174 174 HOH HOH A . B 2 HOH 69 175 19 HOH HOH A . B 2 HOH 70 176 22 HOH HOH A . B 2 HOH 71 177 23 HOH HOH A . B 2 HOH 72 178 26 HOH HOH A . B 2 HOH 73 179 179 HOH HOH A . B 2 HOH 74 180 180 HOH HOH A . B 2 HOH 75 181 181 HOH HOH A . B 2 HOH 76 182 182 HOH HOH A . B 2 HOH 77 183 28 HOH HOH A . B 2 HOH 78 184 29 HOH HOH A . B 2 HOH 79 185 30 HOH HOH A . B 2 HOH 80 186 31 HOH HOH A . B 2 HOH 81 187 33 HOH HOH A . B 2 HOH 82 188 188 HOH HOH A . B 2 HOH 83 189 189 HOH HOH A . B 2 HOH 84 190 34 HOH HOH A . B 2 HOH 85 191 191 HOH HOH A . B 2 HOH 86 192 192 HOH HOH A . B 2 HOH 87 193 193 HOH HOH A . B 2 HOH 88 194 35 HOH HOH A . B 2 HOH 89 195 36 HOH HOH A . B 2 HOH 90 196 37 HOH HOH A . B 2 HOH 91 197 197 HOH HOH A . B 2 HOH 92 198 40 HOH HOH A . B 2 HOH 93 199 199 HOH HOH A . B 2 HOH 94 200 200 HOH HOH A . B 2 HOH 95 201 201 HOH HOH A . B 2 HOH 96 202 202 HOH HOH A . B 2 HOH 97 203 203 HOH HOH A . B 2 HOH 98 204 204 HOH HOH A . B 2 HOH 99 205 205 HOH HOH A . B 2 HOH 100 206 41 HOH HOH A . B 2 HOH 101 207 42 HOH HOH A . B 2 HOH 102 208 43 HOH HOH A . B 2 HOH 103 209 44 HOH HOH A . B 2 HOH 104 210 46 HOH HOH A . B 2 HOH 105 211 48 HOH HOH A . B 2 HOH 106 212 49 HOH HOH A . B 2 HOH 107 213 50 HOH HOH A . B 2 HOH 108 214 51 HOH HOH A . B 2 HOH 109 215 52 HOH HOH A . B 2 HOH 110 216 53 HOH HOH A . B 2 HOH 111 217 54 HOH HOH A . B 2 HOH 112 218 55 HOH HOH A . B 2 HOH 113 219 56 HOH HOH A . B 2 HOH 114 220 57 HOH HOH A . B 2 HOH 115 221 59 HOH HOH A . B 2 HOH 116 222 62 HOH HOH A . B 2 HOH 117 223 63 HOH HOH A . B 2 HOH 118 224 64 HOH HOH A . B 2 HOH 119 225 65 HOH HOH A . B 2 HOH 120 226 66 HOH HOH A . B 2 HOH 121 227 67 HOH HOH A . B 2 HOH 122 228 68 HOH HOH A . B 2 HOH 123 229 71 HOH HOH A . B 2 HOH 124 230 72 HOH HOH A . B 2 HOH 125 231 73 HOH HOH A . B 2 HOH 126 232 76 HOH HOH A . B 2 HOH 127 233 79 HOH HOH A . B 2 HOH 128 234 82 HOH HOH A . B 2 HOH 129 235 83 HOH HOH A . B 2 HOH 130 236 88 HOH HOH A . B 2 HOH 131 237 92 HOH HOH A . B 2 HOH 132 238 93 HOH HOH A . B 2 HOH 133 239 94 HOH HOH A . B 2 HOH 134 240 95 HOH HOH A . B 2 HOH 135 241 96 HOH HOH A . B 2 HOH 136 242 97 HOH HOH A . B 2 HOH 137 243 98 HOH HOH A . B 2 HOH 138 244 99 HOH HOH A . B 2 HOH 139 245 101 HOH HOH A . B 2 HOH 140 246 103 HOH HOH A . B 2 HOH 141 247 104 HOH HOH A . B 2 HOH 142 248 106 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 55 A MSE 49 ? MET SELENOMETHIONINE 2 A MSE 93 A MSE 87 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 150 ? B HOH . 2 1 A HOH 174 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' collect ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 ARP 'model building' . ? 4 WARP 'model building' . ? 5 HKL-3000 phasing . ? 6 REFMAC refinement 5.5.0054 ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 103 ? ? O A HOH 170 ? ? 1.88 2 1 O A HOH 179 ? ? O A HOH 216 ? ? 2.03 3 1 OD2 A ASP 64 ? A O A HOH 172 ? ? 2.18 4 1 OD2 A ASP 92 ? ? O A HOH 220 ? ? 2.18 5 1 C A GLU 106 ? ? O A HOH 203 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OD1 A ASP 64 ? B 1_555 O A HOH 247 ? ? 3_545 1.86 2 1 O A HOH 121 ? ? 1_555 O A HOH 220 ? ? 4_545 2.07 3 1 OE1 A GLN 13 ? B 1_555 NE2 A GLN 103 ? ? 1_545 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 29 ? B 73.43 31.27 2 1 HIS A 93 ? ? 50.08 -137.48 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #