HEADER OXIDOREDUCTASE 02-SEP-09 3IWJ TITLE CRYSTAL STRUCTURE OF AMINOALDEHYDE DEHYDROGENASE 2 FROM PISUM SATIVUM TITLE 2 (PSAMADH2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINOALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.19; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 3 ORGANISM_COMMON: GARDEN PEA; SOURCE 4 ORGANISM_TAXID: 3888; SOURCE 5 GENE: AMADH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: T7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDFDUET KEYWDS ROSSMANN FOLD, DIMER, AMINOALDEHYDE DEHYDROGENASE, BETAINE ALDEHYDE KEYWDS 2 DEHYDROGENASE, NAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOPECNY,S.MORERA,P.BRIOZZO REVDAT 3 01-NOV-23 3IWJ 1 REMARK LINK REVDAT 2 04-DEC-13 3IWJ 1 JRNL VERSN REVDAT 1 19-JAN-10 3IWJ 0 JRNL AUTH M.TYLICHOVA,D.KOPECNY,S.MORERA,P.BRIOZZO,R.LENOBEL, JRNL AUTH 2 J.SNEGAROFF,M.SEBELA JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PLANT JRNL TITL 2 AMINOALDEHYDE DEHYDROGENASE FROM PISUM SATIVUM WITH A BROAD JRNL TITL 3 SPECIFICITY FOR NATURAL AND SYNTHETIC AMINOALDEHYDES. JRNL REF J.MOL.BIOL. V. 396 870 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20026072 JRNL DOI 10.1016/J.JMB.2009.12.015 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : 4.82000 REMARK 3 B33 (A**2) : -3.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.311 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.042 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7898 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10757 ; 1.168 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1000 ; 5.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;33.179 ;24.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1302 ;16.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.634 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1227 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5836 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4987 ; 0.372 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8050 ; 0.722 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2911 ; 1.143 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2706 ; 1.995 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000054953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IWK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 10% ISOPROPANOL, 0.5% REMARK 280 BETA-OCTYLGLUCOSIDE, 5MM NAD, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.12500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.58000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.58000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ILE A 3 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ILE B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 8 NH2 ARG B 24 2.10 REMARK 500 O HOH A 515 O HOH A 543 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 24.53 38.31 REMARK 500 TRP A 66 -75.17 -133.38 REMARK 500 ALA A 190 77.74 -155.13 REMARK 500 GLN A 292 58.10 -93.07 REMARK 500 THR A 417 146.17 -170.62 REMARK 500 LEU A 421 -75.94 -77.20 REMARK 500 GLN A 451 -28.81 102.08 REMARK 500 LYS A 463 -131.54 46.00 REMARK 500 LEU A 471 165.87 66.04 REMARK 500 TRP B 66 -75.36 -139.32 REMARK 500 ALA B 190 90.42 -160.91 REMARK 500 VAL B 254 48.73 39.46 REMARK 500 GLN B 292 57.18 -97.01 REMARK 500 LEU B 421 -75.11 -87.48 REMARK 500 GLN B 451 -23.81 99.63 REMARK 500 LYS B 463 -126.39 47.43 REMARK 500 LEU B 471 163.94 66.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 504 REMARK 610 NAD B 504 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 28 O REMARK 620 2 ASP A 99 O 98.4 REMARK 620 3 ASP A 99 OD1 127.8 77.0 REMARK 620 4 LEU A 189 O 149.7 91.1 82.3 REMARK 620 5 HOH A 562 O 78.3 164.4 117.2 84.9 REMARK 620 6 HOH A 572 O 80.6 84.7 147.8 71.7 79.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 28 O REMARK 620 2 ASP B 99 O 97.2 REMARK 620 3 ASP B 99 OD1 121.5 70.1 REMARK 620 4 LEU B 189 O 159.2 83.4 78.4 REMARK 620 5 HOH B 526 O 88.3 77.9 138.0 71.4 REMARK 620 6 HOH B 537 O 95.0 167.4 106.0 84.1 99.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IWK RELATED DB: PDB DBREF 3IWJ A 1 503 UNP Q93YB2 Q93YB2_PEA 1 503 DBREF 3IWJ B 1 503 UNP Q93YB2 Q93YB2_PEA 1 503 SEQRES 1 A 503 MET ASP ILE PRO ILE PRO THR ARG GLN LEU PHE ILE ASN SEQRES 2 A 503 GLY ASP TRP LYS ALA PRO VAL LEU ASN LYS ARG ILE PRO SEQRES 3 A 503 VAL ILE ASN PRO ALA THR GLN ASN ILE ILE GLY ASP ILE SEQRES 4 A 503 PRO ALA ALA THR LYS GLU ASP VAL ASP VAL ALA VAL ALA SEQRES 5 A 503 ALA ALA LYS THR ALA LEU THR ARG ASN LYS GLY ALA ASP SEQRES 6 A 503 TRP ALA THR ALA SER GLY ALA VAL ARG ALA ARG TYR LEU SEQRES 7 A 503 ARG ALA ILE ALA ALA LYS VAL THR GLU LYS LYS PRO GLU SEQRES 8 A 503 LEU ALA LYS LEU GLU SER ILE ASP CYS GLY LYS PRO LEU SEQRES 9 A 503 ASP GLU ALA ALA TRP ASP ILE ASP ASP VAL ALA GLY CYS SEQRES 10 A 503 PHE GLU TYR TYR ALA ASP LEU ALA GLU LYS LEU ASP ALA SEQRES 11 A 503 ARG GLN LYS ALA PRO VAL SER LEU PRO MET ASP THR PHE SEQRES 12 A 503 LYS SER HIS VAL LEU ARG GLU PRO ILE GLY VAL VAL GLY SEQRES 13 A 503 LEU ILE THR PRO TRP ASN TYR PRO MET LEU MET ALA THR SEQRES 14 A 503 TRP LYS VAL ALA PRO ALA LEU ALA ALA GLY CYS ALA ALA SEQRES 15 A 503 ILE LEU LYS PRO SER GLU LEU ALA SER LEU THR CYS LEU SEQRES 16 A 503 GLU LEU GLY GLU ILE CYS LYS GLU VAL GLY LEU PRO PRO SEQRES 17 A 503 GLY VAL LEU ASN ILE LEU THR GLY LEU GLY PRO GLU ALA SEQRES 18 A 503 GLY ALA PRO LEU ALA THR HIS PRO ASP VAL ASP LYS VAL SEQRES 19 A 503 ALA PHE THR GLY SER SER ALA THR GLY SER LYS ILE MET SEQRES 20 A 503 THR ALA ALA ALA GLN LEU VAL LYS PRO VAL SER LEU GLU SEQRES 21 A 503 LEU GLY GLY LYS SER PRO LEU VAL VAL PHE GLU ASP VAL SEQRES 22 A 503 ASP LEU ASP LYS ALA ALA GLU TRP ALA ILE PHE GLY CYS SEQRES 23 A 503 PHE TRP THR ASN GLY GLN ILE CYS SER ALA THR SER ARG SEQRES 24 A 503 LEU ILE LEU HIS GLU SER ILE ALA THR GLU PHE LEU ASN SEQRES 25 A 503 ARG ILE VAL LYS TRP ILE LYS ASN ILE LYS ILE SER ASP SEQRES 26 A 503 PRO LEU GLU GLU GLY CYS ARG LEU GLY PRO VAL VAL SER SEQRES 27 A 503 GLU GLY GLN TYR GLU LYS ILE LEU LYS PHE VAL SER ASN SEQRES 28 A 503 ALA LYS SER GLU GLY ALA THR ILE LEU THR GLY GLY SER SEQRES 29 A 503 ARG PRO GLU HIS LEU LYS LYS GLY PHE PHE ILE GLU PRO SEQRES 30 A 503 THR ILE ILE THR ASP VAL THR THR ASN MET GLN ILE TRP SEQRES 31 A 503 ARG GLU GLU VAL PHE GLY PRO VAL LEU CYS VAL LYS THR SEQRES 32 A 503 PHE SER THR GLU GLU GLU ALA ILE ASP LEU ALA ASN ASP SEQRES 33 A 503 THR VAL TYR GLY LEU GLY ALA ALA VAL ILE SER ASN ASP SEQRES 34 A 503 LEU GLU ARG CYS GLU ARG VAL THR LYS ALA PHE LYS ALA SEQRES 35 A 503 GLY ILE VAL TRP VAL ASN CYS SER GLN PRO CYS PHE THR SEQRES 36 A 503 GLN ALA PRO TRP GLY GLY VAL LYS ARG SER GLY PHE GLY SEQRES 37 A 503 ARG GLU LEU GLY GLU TRP GLY LEU ASP ASN TYR LEU SER SEQRES 38 A 503 VAL LYS GLN VAL THR GLN TYR ILE SER GLU GLU PRO TRP SEQRES 39 A 503 GLY TRP TYR GLN PRO PRO ALA LYS LEU SEQRES 1 B 503 MET ASP ILE PRO ILE PRO THR ARG GLN LEU PHE ILE ASN SEQRES 2 B 503 GLY ASP TRP LYS ALA PRO VAL LEU ASN LYS ARG ILE PRO SEQRES 3 B 503 VAL ILE ASN PRO ALA THR GLN ASN ILE ILE GLY ASP ILE SEQRES 4 B 503 PRO ALA ALA THR LYS GLU ASP VAL ASP VAL ALA VAL ALA SEQRES 5 B 503 ALA ALA LYS THR ALA LEU THR ARG ASN LYS GLY ALA ASP SEQRES 6 B 503 TRP ALA THR ALA SER GLY ALA VAL ARG ALA ARG TYR LEU SEQRES 7 B 503 ARG ALA ILE ALA ALA LYS VAL THR GLU LYS LYS PRO GLU SEQRES 8 B 503 LEU ALA LYS LEU GLU SER ILE ASP CYS GLY LYS PRO LEU SEQRES 9 B 503 ASP GLU ALA ALA TRP ASP ILE ASP ASP VAL ALA GLY CYS SEQRES 10 B 503 PHE GLU TYR TYR ALA ASP LEU ALA GLU LYS LEU ASP ALA SEQRES 11 B 503 ARG GLN LYS ALA PRO VAL SER LEU PRO MET ASP THR PHE SEQRES 12 B 503 LYS SER HIS VAL LEU ARG GLU PRO ILE GLY VAL VAL GLY SEQRES 13 B 503 LEU ILE THR PRO TRP ASN TYR PRO MET LEU MET ALA THR SEQRES 14 B 503 TRP LYS VAL ALA PRO ALA LEU ALA ALA GLY CYS ALA ALA SEQRES 15 B 503 ILE LEU LYS PRO SER GLU LEU ALA SER LEU THR CYS LEU SEQRES 16 B 503 GLU LEU GLY GLU ILE CYS LYS GLU VAL GLY LEU PRO PRO SEQRES 17 B 503 GLY VAL LEU ASN ILE LEU THR GLY LEU GLY PRO GLU ALA SEQRES 18 B 503 GLY ALA PRO LEU ALA THR HIS PRO ASP VAL ASP LYS VAL SEQRES 19 B 503 ALA PHE THR GLY SER SER ALA THR GLY SER LYS ILE MET SEQRES 20 B 503 THR ALA ALA ALA GLN LEU VAL LYS PRO VAL SER LEU GLU SEQRES 21 B 503 LEU GLY GLY LYS SER PRO LEU VAL VAL PHE GLU ASP VAL SEQRES 22 B 503 ASP LEU ASP LYS ALA ALA GLU TRP ALA ILE PHE GLY CYS SEQRES 23 B 503 PHE TRP THR ASN GLY GLN ILE CYS SER ALA THR SER ARG SEQRES 24 B 503 LEU ILE LEU HIS GLU SER ILE ALA THR GLU PHE LEU ASN SEQRES 25 B 503 ARG ILE VAL LYS TRP ILE LYS ASN ILE LYS ILE SER ASP SEQRES 26 B 503 PRO LEU GLU GLU GLY CYS ARG LEU GLY PRO VAL VAL SER SEQRES 27 B 503 GLU GLY GLN TYR GLU LYS ILE LEU LYS PHE VAL SER ASN SEQRES 28 B 503 ALA LYS SER GLU GLY ALA THR ILE LEU THR GLY GLY SER SEQRES 29 B 503 ARG PRO GLU HIS LEU LYS LYS GLY PHE PHE ILE GLU PRO SEQRES 30 B 503 THR ILE ILE THR ASP VAL THR THR ASN MET GLN ILE TRP SEQRES 31 B 503 ARG GLU GLU VAL PHE GLY PRO VAL LEU CYS VAL LYS THR SEQRES 32 B 503 PHE SER THR GLU GLU GLU ALA ILE ASP LEU ALA ASN ASP SEQRES 33 B 503 THR VAL TYR GLY LEU GLY ALA ALA VAL ILE SER ASN ASP SEQRES 34 B 503 LEU GLU ARG CYS GLU ARG VAL THR LYS ALA PHE LYS ALA SEQRES 35 B 503 GLY ILE VAL TRP VAL ASN CYS SER GLN PRO CYS PHE THR SEQRES 36 B 503 GLN ALA PRO TRP GLY GLY VAL LYS ARG SER GLY PHE GLY SEQRES 37 B 503 ARG GLU LEU GLY GLU TRP GLY LEU ASP ASN TYR LEU SER SEQRES 38 B 503 VAL LYS GLN VAL THR GLN TYR ILE SER GLU GLU PRO TRP SEQRES 39 B 503 GLY TRP TYR GLN PRO PRO ALA LYS LEU HET NAD A 504 27 HET NA A 505 1 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET NAD B 504 27 HET NA B 505 1 HET GOL B 506 6 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 NA 2(NA 1+) FORMUL 5 GOL 7(C3 H8 O3) FORMUL 14 HOH *290(H2 O) HELIX 1 1 THR A 43 ARG A 60 1 18 HELIX 2 2 ASN A 61 ALA A 64 5 4 HELIX 3 3 SER A 70 LYS A 88 1 19 HELIX 4 4 LYS A 88 GLY A 101 1 14 HELIX 5 5 PRO A 103 GLN A 132 1 30 HELIX 6 6 TYR A 163 ALA A 178 1 16 HELIX 7 7 SER A 191 GLY A 205 1 15 HELIX 8 8 LEU A 217 GLY A 222 1 6 HELIX 9 9 GLY A 222 THR A 227 1 6 HELIX 10 10 SER A 239 ALA A 251 1 13 HELIX 11 11 GLN A 252 VAL A 254 5 3 HELIX 12 12 ASP A 274 PHE A 287 1 14 HELIX 13 13 TRP A 288 GLN A 292 5 5 HELIX 14 14 ILE A 306 ASN A 320 1 15 HELIX 15 15 SER A 338 GLU A 355 1 18 HELIX 16 16 MET A 387 GLU A 392 1 6 HELIX 17 17 THR A 406 ASN A 415 1 10 HELIX 18 18 ASP A 429 PHE A 440 1 12 HELIX 19 19 VAL A 462 ARG A 464 5 3 HELIX 20 20 LEU A 471 ASN A 478 1 8 HELIX 21 21 THR B 43 ARG B 60 1 18 HELIX 22 22 ASN B 61 ALA B 64 5 4 HELIX 23 23 SER B 70 LYS B 88 1 19 HELIX 24 24 LYS B 88 GLY B 101 1 14 HELIX 25 25 PRO B 103 ASP B 129 1 27 HELIX 26 26 ALA B 130 GLN B 132 5 3 HELIX 27 27 TYR B 163 ALA B 178 1 16 HELIX 28 28 SER B 191 GLY B 205 1 15 HELIX 29 29 LEU B 217 GLY B 222 1 6 HELIX 30 30 ALA B 223 ALA B 226 5 4 HELIX 31 31 SER B 239 GLN B 252 1 14 HELIX 32 32 ASP B 274 PHE B 287 1 14 HELIX 33 33 TRP B 288 GLN B 292 5 5 HELIX 34 34 ILE B 306 ASN B 320 1 15 HELIX 35 35 SER B 338 GLU B 355 1 18 HELIX 36 36 MET B 387 GLU B 392 1 6 HELIX 37 37 THR B 406 ASN B 415 1 10 HELIX 38 38 ASP B 429 PHE B 440 1 12 HELIX 39 39 VAL B 462 ARG B 464 5 3 HELIX 40 40 LEU B 471 ASN B 478 1 8 SHEET 1 A 2 LEU A 10 ILE A 12 0 SHEET 2 A 2 ASP A 15 LYS A 17 -1 O LYS A 17 N LEU A 10 SHEET 1 B 2 ARG A 24 ILE A 28 0 SHEET 2 B 2 ILE A 35 PRO A 40 -1 O ILE A 36 N VAL A 27 SHEET 1 C10 ALA A 134 VAL A 136 0 SHEET 2 C10 PHE A 143 PRO A 151 -1 O SER A 145 N VAL A 136 SHEET 3 C10 LEU A 480 TYR A 488 -1 O GLN A 487 N LYS A 144 SHEET 4 C10 ILE B 444 VAL B 447 1 O VAL B 445 N GLN A 484 SHEET 5 C10 GLY B 422 ILE B 426 1 N ALA B 423 O TRP B 446 SHEET 6 C10 SER B 265 VAL B 269 1 N VAL B 268 O ALA B 424 SHEET 7 C10 THR B 297 HIS B 303 1 O ILE B 301 N VAL B 269 SHEET 8 C10 VAL B 398 PHE B 404 1 O CYS B 400 N LEU B 300 SHEET 9 C10 THR B 378 THR B 381 1 N ILE B 380 O LEU B 399 SHEET 10 C10 THR B 358 THR B 361 -1 N THR B 358 O THR B 381 SHEET 1 D 6 LEU A 211 ILE A 213 0 SHEET 2 D 6 ALA A 181 LYS A 185 1 N LEU A 184 O ASN A 212 SHEET 3 D 6 VAL A 154 ILE A 158 1 N LEU A 157 O LYS A 185 SHEET 4 D 6 LYS A 233 THR A 237 1 O ALA A 235 N ILE A 158 SHEET 5 D 6 VAL A 257 GLU A 260 1 O SER A 258 N PHE A 236 SHEET 6 D 6 GLY A 466 PHE A 467 -1 O PHE A 467 N LEU A 259 SHEET 1 E10 THR A 358 THR A 361 0 SHEET 2 E10 THR A 378 THR A 381 -1 O THR A 381 N THR A 358 SHEET 3 E10 VAL A 398 PHE A 404 1 O LEU A 399 N ILE A 380 SHEET 4 E10 THR A 297 HIS A 303 1 N LEU A 300 O CYS A 400 SHEET 5 E10 SER A 265 VAL A 269 1 N VAL A 269 O ILE A 301 SHEET 6 E10 GLY A 422 ILE A 426 1 O ILE A 426 N VAL A 268 SHEET 7 E10 ILE A 444 VAL A 447 1 O TRP A 446 N ALA A 423 SHEET 8 E10 LEU B 480 TYR B 488 1 O GLN B 484 N VAL A 445 SHEET 9 E10 PHE B 143 PRO B 151 -1 N LYS B 144 O GLN B 487 SHEET 10 E10 ALA B 134 VAL B 136 -1 N VAL B 136 O SER B 145 SHEET 1 F 2 LEU B 10 ILE B 12 0 SHEET 2 F 2 ASP B 15 LYS B 17 -1 O LYS B 17 N LEU B 10 SHEET 1 G 2 ARG B 24 ILE B 28 0 SHEET 2 G 2 ILE B 35 PRO B 40 -1 O ILE B 36 N VAL B 27 SHEET 1 H 6 LEU B 211 ILE B 213 0 SHEET 2 H 6 ALA B 181 LYS B 185 1 N LEU B 184 O ASN B 212 SHEET 3 H 6 VAL B 154 ILE B 158 1 N LEU B 157 O LYS B 185 SHEET 4 H 6 LYS B 233 THR B 237 1 O ALA B 235 N GLY B 156 SHEET 5 H 6 VAL B 257 GLU B 260 1 O GLU B 260 N PHE B 236 SHEET 6 H 6 GLY B 466 PHE B 467 -1 O PHE B 467 N LEU B 259 LINK O ILE A 28 NA NA A 505 1555 1555 3.03 LINK O ASP A 99 NA NA A 505 1555 1555 2.41 LINK OD1 ASP A 99 NA NA A 505 1555 1555 2.72 LINK O LEU A 189 NA NA A 505 1555 1555 2.63 LINK NA NA A 505 O HOH A 562 1555 1555 2.23 LINK NA NA A 505 O HOH A 572 1555 1555 2.31 LINK O ILE B 28 NA NA B 505 1555 1555 2.77 LINK O ASP B 99 NA NA B 505 1555 1555 2.49 LINK OD1 ASP B 99 NA NA B 505 1555 1555 2.65 LINK O LEU B 189 NA NA B 505 1555 1555 2.74 LINK NA NA B 505 O HOH B 526 1555 1555 2.25 LINK NA NA B 505 O HOH B 537 1555 1555 2.18 SITE 1 AC1 17 ILE A 158 THR A 159 TRP A 161 LYS A 185 SITE 2 AC1 17 PRO A 186 SER A 187 GLU A 188 GLY A 218 SITE 3 AC1 17 GLY A 222 ALA A 223 PHE A 236 GLY A 238 SITE 4 AC1 17 SER A 239 THR A 242 ILE A 246 HOH A 555 SITE 5 AC1 17 HOH A 580 SITE 1 AC2 5 ILE A 28 ASP A 99 LEU A 189 HOH A 562 SITE 2 AC2 5 HOH A 572 SITE 1 AC3 4 ASP A 110 ASP A 113 CYS A 453 HOH A 602 SITE 1 AC4 6 ASN A 162 TYR A 163 TRP A 170 ILE A 293 SITE 2 AC4 6 CYS A 294 TRP A 459 SITE 1 AC5 3 GLU A 473 ASP A 477 ARG B 149 SITE 1 AC6 17 ILE B 158 THR B 159 TRP B 161 LYS B 185 SITE 2 AC6 17 PRO B 186 SER B 187 GLU B 188 GLY B 218 SITE 3 AC6 17 GLY B 222 ALA B 223 PHE B 236 SER B 239 SITE 4 AC6 17 THR B 242 ILE B 246 HOH B 544 HOH B 575 SITE 5 AC6 17 HOH B 610 SITE 1 AC7 5 ILE B 28 ASP B 99 LEU B 189 HOH B 526 SITE 2 AC7 5 HOH B 537 SITE 1 AC8 6 ASP B 113 TYR B 163 LEU B 166 CYS B 453 SITE 2 AC8 6 GOL B 508 HOH B 658 SITE 1 AC9 5 ARG A 149 HOH A 599 GLU B 473 TRP B 474 SITE 2 AC9 5 ASP B 477 SITE 1 BC1 7 TYR B 163 TRP B 170 ILE B 293 CYS B 294 SITE 2 BC1 7 SER B 295 TRP B 459 GOL B 506 SITE 1 BC2 4 LYS B 44 THR B 227 HOH B 590 HOH B 618 CRYST1 66.250 86.730 179.160 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005582 0.00000