data_3J0G # _entry.id 3J0G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3J0G pdb_00003j0g 10.2210/pdb3j0g/pdb RCSB RCSB160094 ? ? WWPDB D_1000160094 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-5275 'associated EM volume' 'A cubic portion of the original 3D density map of VEEV (covering one asymmetric unit)' EMDB EMD-5276 'other EM volume' 'the non-icosahedrally averaged cryo-EM density maps of VEEV' PDB 3J0C unspecified 'structure of VEEV E1, E2, and capsid' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3J0G _pdbx_database_status.recvd_initial_deposition_date 2011-07-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Hryc, C.F.' 2 'Chiu, W.' 3 # _citation.id primary _citation.title '4.4 angstrom cryo-EM structure of an enveloped alphavirus Venezuelan equine encephalitis virus.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 30 _citation.page_first 3854 _citation.page_last 3863 _citation.year 2011 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 1460-2075 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21829169 _citation.pdbx_database_id_DOI 10.1038/emboj.2011.261 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, R.' 1 ? primary 'Hryc, C.F.' 2 ? primary 'Cong, Y.' 3 ? primary 'Liu, X.' 4 ? primary 'Jakana, J.' 5 ? primary 'Gorchakov, R.' 6 ? primary 'Baker, M.L.' 7 ? primary 'Weaver, S.C.' 8 ? primary 'Chiu, W.' 9 ? # _cell.entry_id 3J0G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3J0G _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'E3 protein' _entity.formula_weight 6488.601 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 276-334' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Spike glycoprotein E3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SLVTTMCLLANVTFPCAQPPICYDRKPAETLAMLSVNVDNPGYDELLEAAVKCPGRKRR _entity_poly.pdbx_seq_one_letter_code_can SLVTTMCLLANVTFPCAQPPICYDRKPAETLAMLSVNVDNPGYDELLEAAVKCPGRKRR _entity_poly.pdbx_strand_id M,N,O,P _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 VAL n 1 4 THR n 1 5 THR n 1 6 MET n 1 7 CYS n 1 8 LEU n 1 9 LEU n 1 10 ALA n 1 11 ASN n 1 12 VAL n 1 13 THR n 1 14 PHE n 1 15 PRO n 1 16 CYS n 1 17 ALA n 1 18 GLN n 1 19 PRO n 1 20 PRO n 1 21 ILE n 1 22 CYS n 1 23 TYR n 1 24 ASP n 1 25 ARG n 1 26 LYS n 1 27 PRO n 1 28 ALA n 1 29 GLU n 1 30 THR n 1 31 LEU n 1 32 ALA n 1 33 MET n 1 34 LEU n 1 35 SER n 1 36 VAL n 1 37 ASN n 1 38 VAL n 1 39 ASP n 1 40 ASN n 1 41 PRO n 1 42 GLY n 1 43 TYR n 1 44 ASP n 1 45 GLU n 1 46 LEU n 1 47 LEU n 1 48 GLU n 1 49 ALA n 1 50 ALA n 1 51 VAL n 1 52 LYS n 1 53 CYS n 1 54 PRO n 1 55 GLY n 1 56 ARG n 1 57 LYS n 1 58 ARG n 1 59 ARG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name VEEV _entity_src_nat.pdbx_organism_scientific 'Venezuelan equine encephalitis virus' _entity_src_nat.pdbx_ncbi_taxonomy_id 11037 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain TC-83 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'purified from infected Baby hamster kidney (BHK) cells' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLS_EEVV8 _struct_ref.pdbx_db_accession P05674 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SLVTTMCLLANVTFPCAQPPICYDRKPAETLAMLSVNVDNPGYDELLEAAVKCPGRKRR _struct_ref.pdbx_align_begin 276 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3J0G M 1 ? 59 ? P05674 276 ? 334 ? 1 59 2 1 3J0G N 1 ? 59 ? P05674 276 ? 334 ? 1 59 3 1 3J0G O 1 ? 59 ? P05674 276 ? 334 ? 1 59 4 1 3J0G P 1 ? 59 ? P05674 276 ? 334 ? 1 59 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3J0G _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1800 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1800 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 3J0G _struct.title 'Homology model of E3 protein of Venezuelan Equine Encephalitis Virus TC-83 strain fitted with a cryo-EM map' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3J0G _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'alphavirus, bioweapon, VEEV, VIRUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 26 ? ASN A 37 ? LYS M 26 ASN M 37 1 ? 12 HELX_P HELX_P2 2 GLY A 42 ? LYS A 52 ? GLY M 42 LYS M 52 1 ? 11 HELX_P HELX_P3 3 LYS B 26 ? ASN B 37 ? LYS N 26 ASN N 37 1 ? 12 HELX_P HELX_P4 4 GLY B 42 ? LYS B 52 ? GLY N 42 LYS N 52 1 ? 11 HELX_P HELX_P5 5 LYS C 26 ? ASN C 37 ? LYS O 26 ASN O 37 1 ? 12 HELX_P HELX_P6 6 GLY C 42 ? LYS C 52 ? GLY O 42 LYS O 52 1 ? 11 HELX_P HELX_P7 7 LYS D 26 ? ASN D 37 ? LYS P 26 ASN P 37 1 ? 12 HELX_P HELX_P8 8 GLY D 42 ? LYS D 52 ? GLY P 42 LYS P 52 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 16 SG ? ? M CYS 7 M CYS 16 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? B CYS 7 SG ? ? ? 1_555 B CYS 16 SG ? ? N CYS 7 N CYS 16 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? C CYS 7 SG ? ? ? 1_555 C CYS 16 SG ? ? O CYS 7 O CYS 16 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? D CYS 7 SG ? ? ? 1_555 D CYS 16 SG ? ? P CYS 7 P CYS 16 1_555 ? ? ? ? ? ? ? 2.032 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 6 ? LEU A 9 ? MET M 6 LEU M 9 A 2 VAL A 12 ? PRO A 15 ? VAL M 12 PRO M 15 B 1 MET B 6 ? LEU B 9 ? MET N 6 LEU N 9 B 2 VAL B 12 ? PRO B 15 ? VAL N 12 PRO N 15 C 1 MET C 6 ? LEU C 9 ? MET O 6 LEU O 9 C 2 VAL C 12 ? PRO C 15 ? VAL O 12 PRO O 15 D 1 MET D 6 ? LEU D 9 ? MET P 6 LEU P 9 D 2 VAL D 12 ? PRO D 15 ? VAL P 12 PRO P 15 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 7 ? N CYS M 7 O PHE A 14 ? O PHE M 14 B 1 2 N CYS B 7 ? N CYS N 7 O PHE B 14 ? O PHE N 14 C 1 2 N CYS C 7 ? N CYS O 7 O PHE C 14 ? O PHE O 14 D 1 2 N CYS D 7 ? N CYS P 7 O PHE D 14 ? O PHE P 14 # _database_PDB_matrix.entry_id 3J0G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3J0G _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER M . n A 1 2 LEU 2 2 2 LEU LEU M . n A 1 3 VAL 3 3 3 VAL VAL M . n A 1 4 THR 4 4 4 THR THR M . n A 1 5 THR 5 5 5 THR THR M . n A 1 6 MET 6 6 6 MET MET M . n A 1 7 CYS 7 7 7 CYS CYS M . n A 1 8 LEU 8 8 8 LEU LEU M . n A 1 9 LEU 9 9 9 LEU LEU M . n A 1 10 ALA 10 10 10 ALA ALA M . n A 1 11 ASN 11 11 11 ASN ASN M . n A 1 12 VAL 12 12 12 VAL VAL M . n A 1 13 THR 13 13 13 THR THR M . n A 1 14 PHE 14 14 14 PHE PHE M . n A 1 15 PRO 15 15 15 PRO PRO M . n A 1 16 CYS 16 16 16 CYS CYS M . n A 1 17 ALA 17 17 17 ALA ALA M . n A 1 18 GLN 18 18 18 GLN GLN M . n A 1 19 PRO 19 19 19 PRO PRO M . n A 1 20 PRO 20 20 20 PRO PRO M . n A 1 21 ILE 21 21 21 ILE ILE M . n A 1 22 CYS 22 22 22 CYS CYS M . n A 1 23 TYR 23 23 23 TYR TYR M . n A 1 24 ASP 24 24 24 ASP ASP M . n A 1 25 ARG 25 25 25 ARG ARG M . n A 1 26 LYS 26 26 26 LYS LYS M . n A 1 27 PRO 27 27 27 PRO PRO M . n A 1 28 ALA 28 28 28 ALA ALA M . n A 1 29 GLU 29 29 29 GLU GLU M . n A 1 30 THR 30 30 30 THR THR M . n A 1 31 LEU 31 31 31 LEU LEU M . n A 1 32 ALA 32 32 32 ALA ALA M . n A 1 33 MET 33 33 33 MET MET M . n A 1 34 LEU 34 34 34 LEU LEU M . n A 1 35 SER 35 35 35 SER SER M . n A 1 36 VAL 36 36 36 VAL VAL M . n A 1 37 ASN 37 37 37 ASN ASN M . n A 1 38 VAL 38 38 38 VAL VAL M . n A 1 39 ASP 39 39 39 ASP ASP M . n A 1 40 ASN 40 40 40 ASN ASN M . n A 1 41 PRO 41 41 41 PRO PRO M . n A 1 42 GLY 42 42 42 GLY GLY M . n A 1 43 TYR 43 43 43 TYR TYR M . n A 1 44 ASP 44 44 44 ASP ASP M . n A 1 45 GLU 45 45 45 GLU GLU M . n A 1 46 LEU 46 46 46 LEU LEU M . n A 1 47 LEU 47 47 47 LEU LEU M . n A 1 48 GLU 48 48 48 GLU GLU M . n A 1 49 ALA 49 49 49 ALA ALA M . n A 1 50 ALA 50 50 50 ALA ALA M . n A 1 51 VAL 51 51 51 VAL VAL M . n A 1 52 LYS 52 52 52 LYS LYS M . n A 1 53 CYS 53 53 53 CYS CYS M . n A 1 54 PRO 54 54 54 PRO PRO M . n A 1 55 GLY 55 55 55 GLY GLY M . n A 1 56 ARG 56 56 56 ARG ARG M . n A 1 57 LYS 57 57 57 LYS LYS M . n A 1 58 ARG 58 58 58 ARG ARG M . n A 1 59 ARG 59 59 59 ARG ARG M . n B 1 1 SER 1 1 1 SER SER N . n B 1 2 LEU 2 2 2 LEU LEU N . n B 1 3 VAL 3 3 3 VAL VAL N . n B 1 4 THR 4 4 4 THR THR N . n B 1 5 THR 5 5 5 THR THR N . n B 1 6 MET 6 6 6 MET MET N . n B 1 7 CYS 7 7 7 CYS CYS N . n B 1 8 LEU 8 8 8 LEU LEU N . n B 1 9 LEU 9 9 9 LEU LEU N . n B 1 10 ALA 10 10 10 ALA ALA N . n B 1 11 ASN 11 11 11 ASN ASN N . n B 1 12 VAL 12 12 12 VAL VAL N . n B 1 13 THR 13 13 13 THR THR N . n B 1 14 PHE 14 14 14 PHE PHE N . n B 1 15 PRO 15 15 15 PRO PRO N . n B 1 16 CYS 16 16 16 CYS CYS N . n B 1 17 ALA 17 17 17 ALA ALA N . n B 1 18 GLN 18 18 18 GLN GLN N . n B 1 19 PRO 19 19 19 PRO PRO N . n B 1 20 PRO 20 20 20 PRO PRO N . n B 1 21 ILE 21 21 21 ILE ILE N . n B 1 22 CYS 22 22 22 CYS CYS N . n B 1 23 TYR 23 23 23 TYR TYR N . n B 1 24 ASP 24 24 24 ASP ASP N . n B 1 25 ARG 25 25 25 ARG ARG N . n B 1 26 LYS 26 26 26 LYS LYS N . n B 1 27 PRO 27 27 27 PRO PRO N . n B 1 28 ALA 28 28 28 ALA ALA N . n B 1 29 GLU 29 29 29 GLU GLU N . n B 1 30 THR 30 30 30 THR THR N . n B 1 31 LEU 31 31 31 LEU LEU N . n B 1 32 ALA 32 32 32 ALA ALA N . n B 1 33 MET 33 33 33 MET MET N . n B 1 34 LEU 34 34 34 LEU LEU N . n B 1 35 SER 35 35 35 SER SER N . n B 1 36 VAL 36 36 36 VAL VAL N . n B 1 37 ASN 37 37 37 ASN ASN N . n B 1 38 VAL 38 38 38 VAL VAL N . n B 1 39 ASP 39 39 39 ASP ASP N . n B 1 40 ASN 40 40 40 ASN ASN N . n B 1 41 PRO 41 41 41 PRO PRO N . n B 1 42 GLY 42 42 42 GLY GLY N . n B 1 43 TYR 43 43 43 TYR TYR N . n B 1 44 ASP 44 44 44 ASP ASP N . n B 1 45 GLU 45 45 45 GLU GLU N . n B 1 46 LEU 46 46 46 LEU LEU N . n B 1 47 LEU 47 47 47 LEU LEU N . n B 1 48 GLU 48 48 48 GLU GLU N . n B 1 49 ALA 49 49 49 ALA ALA N . n B 1 50 ALA 50 50 50 ALA ALA N . n B 1 51 VAL 51 51 51 VAL VAL N . n B 1 52 LYS 52 52 52 LYS LYS N . n B 1 53 CYS 53 53 53 CYS CYS N . n B 1 54 PRO 54 54 54 PRO PRO N . n B 1 55 GLY 55 55 55 GLY GLY N . n B 1 56 ARG 56 56 56 ARG ARG N . n B 1 57 LYS 57 57 57 LYS LYS N . n B 1 58 ARG 58 58 58 ARG ARG N . n B 1 59 ARG 59 59 59 ARG ARG N . n C 1 1 SER 1 1 1 SER SER O . n C 1 2 LEU 2 2 2 LEU LEU O . n C 1 3 VAL 3 3 3 VAL VAL O . n C 1 4 THR 4 4 4 THR THR O . n C 1 5 THR 5 5 5 THR THR O . n C 1 6 MET 6 6 6 MET MET O . n C 1 7 CYS 7 7 7 CYS CYS O . n C 1 8 LEU 8 8 8 LEU LEU O . n C 1 9 LEU 9 9 9 LEU LEU O . n C 1 10 ALA 10 10 10 ALA ALA O . n C 1 11 ASN 11 11 11 ASN ASN O . n C 1 12 VAL 12 12 12 VAL VAL O . n C 1 13 THR 13 13 13 THR THR O . n C 1 14 PHE 14 14 14 PHE PHE O . n C 1 15 PRO 15 15 15 PRO PRO O . n C 1 16 CYS 16 16 16 CYS CYS O . n C 1 17 ALA 17 17 17 ALA ALA O . n C 1 18 GLN 18 18 18 GLN GLN O . n C 1 19 PRO 19 19 19 PRO PRO O . n C 1 20 PRO 20 20 20 PRO PRO O . n C 1 21 ILE 21 21 21 ILE ILE O . n C 1 22 CYS 22 22 22 CYS CYS O . n C 1 23 TYR 23 23 23 TYR TYR O . n C 1 24 ASP 24 24 24 ASP ASP O . n C 1 25 ARG 25 25 25 ARG ARG O . n C 1 26 LYS 26 26 26 LYS LYS O . n C 1 27 PRO 27 27 27 PRO PRO O . n C 1 28 ALA 28 28 28 ALA ALA O . n C 1 29 GLU 29 29 29 GLU GLU O . n C 1 30 THR 30 30 30 THR THR O . n C 1 31 LEU 31 31 31 LEU LEU O . n C 1 32 ALA 32 32 32 ALA ALA O . n C 1 33 MET 33 33 33 MET MET O . n C 1 34 LEU 34 34 34 LEU LEU O . n C 1 35 SER 35 35 35 SER SER O . n C 1 36 VAL 36 36 36 VAL VAL O . n C 1 37 ASN 37 37 37 ASN ASN O . n C 1 38 VAL 38 38 38 VAL VAL O . n C 1 39 ASP 39 39 39 ASP ASP O . n C 1 40 ASN 40 40 40 ASN ASN O . n C 1 41 PRO 41 41 41 PRO PRO O . n C 1 42 GLY 42 42 42 GLY GLY O . n C 1 43 TYR 43 43 43 TYR TYR O . n C 1 44 ASP 44 44 44 ASP ASP O . n C 1 45 GLU 45 45 45 GLU GLU O . n C 1 46 LEU 46 46 46 LEU LEU O . n C 1 47 LEU 47 47 47 LEU LEU O . n C 1 48 GLU 48 48 48 GLU GLU O . n C 1 49 ALA 49 49 49 ALA ALA O . n C 1 50 ALA 50 50 50 ALA ALA O . n C 1 51 VAL 51 51 51 VAL VAL O . n C 1 52 LYS 52 52 52 LYS LYS O . n C 1 53 CYS 53 53 53 CYS CYS O . n C 1 54 PRO 54 54 54 PRO PRO O . n C 1 55 GLY 55 55 55 GLY GLY O . n C 1 56 ARG 56 56 56 ARG ARG O . n C 1 57 LYS 57 57 57 LYS LYS O . n C 1 58 ARG 58 58 58 ARG ARG O . n C 1 59 ARG 59 59 59 ARG ARG O . n D 1 1 SER 1 1 1 SER SER P . n D 1 2 LEU 2 2 2 LEU LEU P . n D 1 3 VAL 3 3 3 VAL VAL P . n D 1 4 THR 4 4 4 THR THR P . n D 1 5 THR 5 5 5 THR THR P . n D 1 6 MET 6 6 6 MET MET P . n D 1 7 CYS 7 7 7 CYS CYS P . n D 1 8 LEU 8 8 8 LEU LEU P . n D 1 9 LEU 9 9 9 LEU LEU P . n D 1 10 ALA 10 10 10 ALA ALA P . n D 1 11 ASN 11 11 11 ASN ASN P . n D 1 12 VAL 12 12 12 VAL VAL P . n D 1 13 THR 13 13 13 THR THR P . n D 1 14 PHE 14 14 14 PHE PHE P . n D 1 15 PRO 15 15 15 PRO PRO P . n D 1 16 CYS 16 16 16 CYS CYS P . n D 1 17 ALA 17 17 17 ALA ALA P . n D 1 18 GLN 18 18 18 GLN GLN P . n D 1 19 PRO 19 19 19 PRO PRO P . n D 1 20 PRO 20 20 20 PRO PRO P . n D 1 21 ILE 21 21 21 ILE ILE P . n D 1 22 CYS 22 22 22 CYS CYS P . n D 1 23 TYR 23 23 23 TYR TYR P . n D 1 24 ASP 24 24 24 ASP ASP P . n D 1 25 ARG 25 25 25 ARG ARG P . n D 1 26 LYS 26 26 26 LYS LYS P . n D 1 27 PRO 27 27 27 PRO PRO P . n D 1 28 ALA 28 28 28 ALA ALA P . n D 1 29 GLU 29 29 29 GLU GLU P . n D 1 30 THR 30 30 30 THR THR P . n D 1 31 LEU 31 31 31 LEU LEU P . n D 1 32 ALA 32 32 32 ALA ALA P . n D 1 33 MET 33 33 33 MET MET P . n D 1 34 LEU 34 34 34 LEU LEU P . n D 1 35 SER 35 35 35 SER SER P . n D 1 36 VAL 36 36 36 VAL VAL P . n D 1 37 ASN 37 37 37 ASN ASN P . n D 1 38 VAL 38 38 38 VAL VAL P . n D 1 39 ASP 39 39 39 ASP ASP P . n D 1 40 ASN 40 40 40 ASN ASN P . n D 1 41 PRO 41 41 41 PRO PRO P . n D 1 42 GLY 42 42 42 GLY GLY P . n D 1 43 TYR 43 43 43 TYR TYR P . n D 1 44 ASP 44 44 44 ASP ASP P . n D 1 45 GLU 45 45 45 GLU GLU P . n D 1 46 LEU 46 46 46 LEU LEU P . n D 1 47 LEU 47 47 47 LEU LEU P . n D 1 48 GLU 48 48 48 GLU GLU P . n D 1 49 ALA 49 49 49 ALA ALA P . n D 1 50 ALA 50 50 50 ALA ALA P . n D 1 51 VAL 51 51 51 VAL VAL P . n D 1 52 LYS 52 52 52 LYS LYS P . n D 1 53 CYS 53 53 53 CYS CYS P . n D 1 54 PRO 54 54 54 PRO PRO P . n D 1 55 GLY 55 55 55 GLY GLY P . n D 1 56 ARG 56 56 56 ARG ARG P . n D 1 57 LYS 57 57 57 LYS LYS P . n D 1 58 ARG 58 58 58 ARG ARG P . n D 1 59 ARG 59 59 59 ARG ARG P . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 240-meric 240 2 'icosahedral asymmetric unit' ? tetrameric 4 3 'icosahedral pentamer' ? eicosameric 20 4 'icosahedral 23 hexamer' ? 24-meric 24 5 'icosahedral asymmetric unit, std point frame' ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D 2 1 A,B,C,D 3 '(1-5)' A,B,C,D 4 '(1,2,6,10,23,24)' A,B,C,D 5 P A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.95105652 0.30901699 0.00000000 0.00000 0.26286556 -0.80901699 -0.52573111 0.00000 -0.16245984 0.50000000 -0.85065081 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 0.95105651 0.00000000 0.00000 -0.95105652 0.30901700 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 3 'point symmetry operation' ? ? -0.80901699 0.58778525 0.00000000 0.00000 -0.58778526 -0.80901699 0.00000000 0.00000 -0.00000002 0.00000000 1.00000000 0.00000 4 'point symmetry operation' ? ? -0.80901699 -0.58778525 0.00000000 0.00000 0.58778526 -0.80901699 0.00000000 0.00000 -0.00000001 0.00000000 1.00000000 0.00000 5 'point symmetry operation' ? ? 0.30901700 -0.95105651 0.00000000 0.00000 0.95105652 0.30901699 0.00000000 0.00000 0.00000000 -0.00000001 1.00000000 0.00000 6 'point symmetry operation' ? ? -0.94721360 -0.16245985 0.27639320 0.00000 -0.16245984 -0.50000000 -0.85065081 0.00000 0.27639319 -0.85065081 0.44721360 0.00000 7 'point symmetry operation' ? ? -0.13819660 -0.95105651 0.27639320 0.00000 0.42532542 -0.30901699 -0.85065081 0.00000 0.89442719 -0.00000001 0.44721360 0.00000 8 'point symmetry operation' ? ? 0.86180340 -0.42532540 0.27639320 0.00000 0.42532541 0.30901700 -0.85065081 0.00000 0.27639321 0.85065080 0.44721359 0.00000 9 'point symmetry operation' ? ? 0.67082039 0.68819095 0.27639320 0.00000 -0.16245984 0.50000000 -0.85065081 0.00000 -0.72360680 0.52573112 0.44721359 0.00000 10 'point symmetry operation' ? ? -0.44721360 0.85065080 0.27639320 0.00000 -0.52573111 0.00000000 -0.85065081 0.00000 -0.72360681 -0.52573110 0.44721360 0.00000 11 'point symmetry operation' ? ? -0.86180340 -0.42532540 -0.27639320 0.00000 -0.42532541 0.30901700 0.85065081 0.00000 -0.27639321 0.85065080 -0.44721360 0.00000 12 'point symmetry operation' ? ? 0.13819660 -0.95105651 -0.27639320 0.00000 -0.42532542 -0.30901699 0.85065081 0.00000 -0.89442719 0.00000000 -0.44721360 0.00000 13 'point symmetry operation' ? ? 0.94721360 -0.16245985 -0.27639320 0.00000 0.16245984 -0.50000000 0.85065081 0.00000 -0.27639319 -0.85065080 -0.44721359 0.00000 14 'point symmetry operation' ? ? 0.44721360 0.85065080 -0.27639320 0.00000 0.52573111 0.00000000 0.85065081 0.00000 0.72360681 -0.52573110 -0.44721359 0.00000 15 'point symmetry operation' ? ? -0.67082039 0.68819096 -0.27639320 0.00000 0.16245985 0.50000000 0.85065081 0.00000 0.72360680 0.52573112 -0.44721360 0.00000 16 'point symmetry operation' ? ? 0.80901700 0.58778524 0.00000000 0.00000 0.58778525 -0.80901700 0.00000000 0.00000 0.00000002 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? -0.30901699 0.95105651 0.00000000 0.00000 0.95105653 0.30901699 0.00000000 0.00000 0.00000000 0.00000001 -1.00000000 0.00000 18 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 19 'point symmetry operation' ? ? -0.30901700 -0.95105651 0.00000000 0.00000 -0.95105652 0.30901700 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 20 'point symmetry operation' ? ? 0.80901699 -0.58778525 0.00000000 0.00000 -0.58778526 -0.80901699 0.00000000 0.00000 0.00000001 0.00000000 -1.00000000 0.00000 21 'point symmetry operation' ? ? 0.05278641 0.68819095 -0.72360680 0.00000 -0.68819096 -0.50000000 -0.52573111 0.00000 -0.72360680 0.52573112 0.44721359 0.00000 22 'point symmetry operation' ? ? -0.63819659 0.26286556 -0.72360680 0.00000 0.26286556 -0.80901700 -0.52573111 0.00000 -0.72360681 -0.52573111 0.44721359 0.00000 23 'point symmetry operation' ? ? -0.44721359 -0.52573110 -0.72360680 0.00000 0.85065082 0.00000000 -0.52573111 0.00000 0.27639320 -0.85065081 0.44721359 0.00000 24 'point symmetry operation' ? ? 0.36180340 -0.58778524 -0.72360680 0.00000 0.26286557 0.80901700 -0.52573111 0.00000 0.89442719 0.00000000 0.44721359 0.00000 25 'point symmetry operation' ? ? 0.67082040 0.16245985 -0.72360680 0.00000 -0.68819096 0.50000001 -0.52573111 0.00000 0.27639321 0.85065080 0.44721359 0.00000 26 'point symmetry operation' ? ? -0.36180339 0.26286556 -0.89442719 0.00000 0.58778526 0.80901699 0.00000000 0.00000 0.72360680 -0.52573111 -0.44721360 0.00000 27 'point symmetry operation' ? ? -0.36180339 -0.26286555 -0.89442719 0.00000 -0.58778525 0.80901700 0.00000000 0.00000 0.72360680 0.52573111 -0.44721360 0.00000 28 'point symmetry operation' ? ? 0.13819661 -0.42532540 -0.89442719 0.00000 -0.95105653 -0.30901699 0.00000000 0.00000 -0.27639320 0.85065080 -0.44721361 0.00000 29 'point symmetry operation' ? ? 0.44721360 0.00000000 -0.89442719 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 -0.89442719 0.00000000 -0.44721360 0.00000 30 'point symmetry operation' ? ? 0.13819661 0.42532540 -0.89442719 0.00000 0.95105652 -0.30901700 0.00000000 0.00000 -0.27639320 -0.85065080 -0.44721360 0.00000 31 'point symmetry operation' ? ? -0.13819661 -0.42532540 0.89442719 0.00000 0.95105652 -0.30901699 0.00000000 0.00000 0.27639320 0.85065080 0.44721360 0.00000 32 'point symmetry operation' ? ? 0.36180339 -0.26286556 0.89442719 0.00000 0.58778526 0.80901699 0.00000000 0.00000 -0.72360680 0.52573111 0.44721360 0.00000 33 'point symmetry operation' ? ? 0.36180339 0.26286555 0.89442719 0.00000 -0.58778526 0.80901699 0.00000000 0.00000 -0.72360680 -0.52573110 0.44721360 0.00000 34 'point symmetry operation' ? ? -0.13819661 0.42532540 0.89442719 0.00000 -0.95105652 -0.30901699 0.00000000 0.00000 0.27639319 -0.85065080 0.44721361 0.00000 35 'point symmetry operation' ? ? -0.44721360 0.00000000 0.89442719 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.89442719 0.00000000 0.44721360 0.00000 36 'point symmetry operation' ? ? 0.44721359 -0.52573111 0.72360680 0.00000 -0.85065082 0.00000000 0.52573111 0.00000 -0.27639320 -0.85065081 -0.44721359 0.00000 37 'point symmetry operation' ? ? 0.63819659 0.26286555 0.72360680 0.00000 -0.26286556 -0.80901700 0.52573111 0.00000 0.72360681 -0.52573111 -0.44721359 0.00000 38 'point symmetry operation' ? ? -0.05278641 0.68819095 0.72360680 0.00000 0.68819096 -0.50000000 0.52573111 0.00000 0.72360681 0.52573111 -0.44721359 0.00000 39 'point symmetry operation' ? ? -0.67082040 0.16245985 0.72360680 0.00000 0.68819096 0.50000000 0.52573111 0.00000 -0.27639320 0.85065081 -0.44721359 0.00000 40 'point symmetry operation' ? ? -0.36180341 -0.58778525 0.72360680 0.00000 -0.26286556 0.80901700 0.52573111 0.00000 -0.89442719 0.00000000 -0.44721359 0.00000 41 'point symmetry operation' ? ? 0.05278641 -0.68819095 -0.72360679 0.00000 0.68819096 -0.50000000 0.52573112 0.00000 -0.72360680 -0.52573112 0.44721359 0.00000 42 'point symmetry operation' ? ? 0.67082040 -0.16245984 -0.72360679 0.00000 0.68819096 0.49999999 0.52573112 0.00000 0.27639320 -0.85065081 0.44721359 0.00000 43 'point symmetry operation' ? ? 0.36180341 0.58778525 -0.72360680 0.00000 -0.26286556 0.80901699 0.52573112 0.00000 0.89442719 0.00000000 0.44721359 0.00000 44 'point symmetry operation' ? ? -0.44721359 0.52573111 -0.72360680 0.00000 -0.85065082 0.00000000 0.52573112 0.00000 0.27639319 0.85065081 0.44721359 0.00000 45 'point symmetry operation' ? ? -0.63819660 -0.26286555 -0.72360679 0.00000 -0.26286557 -0.80901699 0.52573112 0.00000 -0.72360681 0.52573111 0.44721359 0.00000 46 'point symmetry operation' ? ? -0.13819660 0.95105651 0.27639320 0.00000 -0.42532541 -0.30901700 0.85065081 0.00000 0.89442719 0.00000000 0.44721360 0.00000 47 'point symmetry operation' ? ? -0.94721360 0.16245985 0.27639320 0.00000 0.16245984 -0.50000000 0.85065081 0.00000 0.27639319 0.85065080 0.44721360 0.00000 48 'point symmetry operation' ? ? -0.44721360 -0.85065080 0.27639321 0.00000 0.52573111 0.00000000 0.85065081 0.00000 -0.72360681 0.52573110 0.44721360 0.00000 49 'point symmetry operation' ? ? 0.67082039 -0.68819096 0.27639321 0.00000 0.16245984 0.50000000 0.85065081 0.00000 -0.72360680 -0.52573111 0.44721360 0.00000 50 'point symmetry operation' ? ? 0.86180340 0.42532540 0.27639320 0.00000 -0.42532542 0.30901699 0.85065081 0.00000 0.27639320 -0.85065080 0.44721360 0.00000 51 'point symmetry operation' ? ? 0.44721359 -0.85065080 -0.27639320 0.00000 -0.52573111 0.00000000 -0.85065081 0.00000 0.72360681 0.52573110 -0.44721360 0.00000 52 'point symmetry operation' ? ? 0.94721360 0.16245984 -0.27639320 0.00000 -0.16245985 -0.50000000 -0.85065081 0.00000 -0.27639319 0.85065081 -0.44721360 0.00000 53 'point symmetry operation' ? ? 0.13819661 0.95105651 -0.27639321 0.00000 0.42532541 -0.30901700 -0.85065081 0.00000 -0.89442719 0.00000001 -0.44721360 0.00000 54 'point symmetry operation' ? ? -0.86180339 0.42532541 -0.27639321 0.00000 0.42532542 0.30901699 -0.85065081 0.00000 -0.27639321 -0.85065080 -0.44721360 0.00000 55 'point symmetry operation' ? ? -0.67082039 -0.68819095 -0.27639320 0.00000 -0.16245984 0.50000000 -0.85065081 0.00000 0.72360680 -0.52573112 -0.44721360 0.00000 56 'point symmetry operation' ? ? -0.36180340 0.58778525 0.72360679 0.00000 0.26286556 0.80901699 -0.52573112 0.00000 -0.89442719 0.00000001 -0.44721359 0.00000 57 'point symmetry operation' ? ? -0.67082040 -0.16245984 0.72360679 0.00000 -0.68819096 0.50000000 -0.52573112 0.00000 -0.27639321 -0.85065080 -0.44721359 0.00000 58 'point symmetry operation' ? ? -0.05278642 -0.68819096 0.72360680 0.00000 -0.68819096 -0.50000000 -0.52573112 0.00000 0.72360680 -0.52573112 -0.44721359 0.00000 59 'point symmetry operation' ? ? 0.63819659 -0.26286556 0.72360680 0.00000 0.26286556 -0.80901699 -0.52573112 0.00000 0.72360681 0.52573110 -0.44721359 0.00000 60 'point symmetry operation' ? ? 0.44721359 0.52573110 0.72360679 0.00000 0.85065082 0.00000000 -0.52573112 0.00000 -0.27639319 0.85065081 -0.44721359 0.00000 # _pdbx_point_symmetry.entry_id 3J0G _pdbx_point_symmetry.Schoenflies_symbol I _pdbx_point_symmetry.circular_symmetry ? _pdbx_point_symmetry.H-M_notation ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-24 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 1 3 2023-07-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_image_scans 2 3 'Structure model' em_imaging_optics 3 3 'Structure model' em_software 4 4 'Structure model' citation 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_database_related 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_imaging_optics.energyfilter_name' 2 3 'Structure model' '_em_software.image_processing_id' 3 4 'Structure model' '_citation.journal_volume' 4 4 'Structure model' '_citation.page_first' 5 4 'Structure model' '_citation.page_last' 6 4 'Structure model' '_citation.title' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_pdbx_database_related.content_type' 10 4 'Structure model' '_pdbx_struct_oper_list.name' 11 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 12 4 'Structure model' '_pdbx_struct_oper_list.type' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3J0G _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;METHOD--rigid-body fitting DETAILS--The E3 homology model was not further refined against the cryo-EM density map due to its less-resolved quality ; _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 3N40 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 3J0G _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'projection matching' _em_3d_reconstruction.nominal_pixel_size 1.07 _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 4.8 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;After each iteration, the non-icosahedral parts (which included the lipids and the RNA) in the reconstruction were removed by a soft-edged mask derived from an icosahedrally organized, protein-only map that was low-pass filtered to 30 Angstroms. This map then served as the reference model for the next iteration. ; _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages 3328 _em_3d_reconstruction.num_particles 37000 _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name 'TEN buffer' _em_buffer.pH 7.4 _em_buffer.details 'TEN buffer' # _em_entity_assembly.id 1 _em_entity_assembly.name 'Venezuelan Equine Encephalitis Virus TC83 strain E3 protein that is cleaved from p62 protein' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details 'The virus contains 240 copies of E1, E2, E3 and capsid proteins' _em_entity_assembly.entity_id_list ? _em_entity_assembly.source ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 3J0G _em_imaging.id 1 _em_imaging.specimen_holder_model 'JEOL 3200FSC CRYOHOLDER' _em_imaging.specimen_id 1 _em_imaging.date 2008-04-09 _em_imaging.temperature 96 _em_imaging.microscope_model 'JEOL 3200FSC' _em_imaging.nominal_defocus_min 400 _em_imaging.nominal_defocus_max 2500 _em_imaging.tilt_angle_min 0.0 _em_imaging.tilt_angle_max 0.0 _em_imaging.nominal_cs 4.3 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 100000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details 'omega energy filter' _em_imaging.specimen_holder_type Eucentric _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism 'objective lens astigmatism was corrected at 100,000 times magnification' _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'two of the eight grids used for imaging contained continuous carbon film underneath the samples' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category VERTEBRATES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.empty NO _em_virus_entity.enveloped YES _em_virus_entity.details ? # _em_vitrification.entry_id 3J0G _em_vitrification.id 1 _em_vitrification.details 'vitrification carried out in Chiu lab, Houston, TX' _em_vitrification.citation_id ? _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.method '2 blots, each blot 2 second before plunging, offset = 0' _em_vitrification.specimen_id 1 _em_vitrification.temp 89.34 _em_vitrification.time_resolved_state ? _em_vitrification.chamber_temperature ? # _em_experiment.entry_id 3J0G _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 3J0G _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C M CYS 53 ? ? N M PRO 54 ? ? CA M PRO 54 ? ? 128.75 119.30 9.45 1.50 Y 2 1 C N CYS 53 ? ? N N PRO 54 ? ? CA N PRO 54 ? ? 128.78 119.30 9.48 1.50 Y 3 1 C O CYS 53 ? ? N O PRO 54 ? ? CA O PRO 54 ? ? 128.81 119.30 9.51 1.50 Y 4 1 C P CYS 53 ? ? N P PRO 54 ? ? CA P PRO 54 ? ? 128.75 119.30 9.45 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA M 10 ? ? 64.48 -155.39 2 1 ALA N 10 ? ? 64.52 -155.40 3 1 ALA O 10 ? ? 64.56 -155.39 4 1 ALA P 10 ? ? 64.48 -155.42 # _em_ctf_correction.id 1 _em_ctf_correction.details 'CTF parameters were determined from particles within each CCD image' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 18 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.energyfilter_name 'In-column Omega Filter' _em_imaging_optics.imaging_id 1 _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_upper ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? 2 EMAN ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 10026 _em_virus_natural_host.organism Cricetinae _em_virus_natural_host.strain 'Baby Hamster Kidney cells' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N40 #