HEADER VIRUS 30-APR-12 3J1Q TITLE STRUCTURE OF AAV-DJ, A RETARGETED GENE THERAPY VECTOR: CRYO-ELECTRON TITLE 2 MICROSCOPY AT 4.5A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENO-ASSOCIATED VIRUS DJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAV-DJ; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS; SOURCE 3 ORGANISM_TAXID: 272636; SOURCE 4 STRAIN: HYBRID OF SEROTYPES 2, 8 AND 9; SOURCE 5 GENE: CAPSID; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFBDDJM11 KEYWDS GENE THERAPY, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR T.F.LERCH,J.K.O'DONNELL,N.L.MEYER,Q.XIE,K.A.TAYLOR,S.M.STAGG, AUTHOR 2 M.S.CHAPMAN REVDAT 4 21-FEB-24 3J1Q 1 REMARK REVDAT 3 18-JUL-18 3J1Q 1 REMARK REVDAT 2 24-OCT-12 3J1Q 1 JRNL REVDAT 1 22-AUG-12 3J1Q 0 JRNL AUTH T.F.LERCH,J.K.O'DONNELL,N.L.MEYER,Q.XIE,K.A.TAYLOR, JRNL AUTH 2 S.M.STAGG,M.S.CHAPMAN JRNL TITL STRUCTURE OF AAV-DJ, A RETARGETED GENE THERAPY VECTOR: JRNL TITL 2 CRYO-ELECTRON MICROSCOPY AT 4.5 A RESOLUTION. JRNL REF STRUCTURE V. 20 1310 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22727812 JRNL DOI 10.1016/J.STR.2012.05.004 REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CNS, RSREF, FREALIGN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1LP3 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 30.000 REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--SIMULATED ANNEALING REMARK 3 TORSION ANGLE DYNAMICS, ISOTROPIC B-FACTOR REFINEMENT DETAILS-- REMARK 3 ITERATIVE REFINEMENT IN RSREF AND MODEL BUILDING IN COOT REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.322 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.500 REMARK 3 NUMBER OF PARTICLES : 27312 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: MAGNIFICATION WAS REMARK 3 CALIBRATED AGAINST THE CRYSTAL STRUCTURE OF A KNOWN HOMOLOG, REMARK 3 AAV2 (1LP3) REMARK 3 REMARK 3 OTHER DETAILS: FREALIGN WAS USED FOR PARTICLE REFINEMENT IN THE REMARK 3 RECONSTRUCTION REMARK 4 REMARK 4 3J1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000160140. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS DJ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.50 REMARK 245 SAMPLE SUPPORT DETAILS : SAMPLE PREPARED ON C-FLAT 2UM REMARK 245 HOLE, 1 UM SPACING, 200 MESH REMARK 245 COPPER GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : 125 MM SODIUM CHLORIDE, 10 MM REMARK 245 TRIS, 1 MM MAGNESIUM CHLORIDE REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : 60 SUBUNITS ASSOCIATE TO FORM A REMARK 245 T=1 ICOSAHEDRAL CAPSID REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 25-FEB-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : NULL REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 2 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 3 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 4 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 7 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 8 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 10 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 12 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 13 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 14 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 15 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 18 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 19 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 20 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 22 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 23 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 24 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 27 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 28 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 29 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 30 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 32 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 33 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 34 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 35 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 37 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 38 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 39 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 40 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 42 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 43 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 44 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 45 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 48 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 49 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 50 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 52 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 54 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 55 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 58 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 59 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 60 -0.809017 0.309017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 TYR A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 ASP A 9 REMARK 465 TRP A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 THR A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 ARG A 20 REMARK 465 GLN A 21 REMARK 465 TRP A 22 REMARK 465 TRP A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 LYS A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 LYS A 33 REMARK 465 PRO A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 ARG A 37 REMARK 465 HIS A 38 REMARK 465 LYS A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 GLY A 44 REMARK 465 LEU A 45 REMARK 465 VAL A 46 REMARK 465 LEU A 47 REMARK 465 PRO A 48 REMARK 465 GLY A 49 REMARK 465 TYR A 50 REMARK 465 LYS A 51 REMARK 465 TYR A 52 REMARK 465 LEU A 53 REMARK 465 GLY A 54 REMARK 465 PRO A 55 REMARK 465 PHE A 56 REMARK 465 ASN A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 LYS A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 PRO A 64 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 GLU A 67 REMARK 465 ALA A 68 REMARK 465 ASP A 69 REMARK 465 ALA A 70 REMARK 465 ALA A 71 REMARK 465 ALA A 72 REMARK 465 LEU A 73 REMARK 465 GLU A 74 REMARK 465 HIS A 75 REMARK 465 ASP A 76 REMARK 465 LYS A 77 REMARK 465 ALA A 78 REMARK 465 TYR A 79 REMARK 465 ASP A 80 REMARK 465 ARG A 81 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 ASP A 84 REMARK 465 SER A 85 REMARK 465 GLY A 86 REMARK 465 ASP A 87 REMARK 465 ASN A 88 REMARK 465 PRO A 89 REMARK 465 TYR A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 TYR A 93 REMARK 465 ASN A 94 REMARK 465 HIS A 95 REMARK 465 ALA A 96 REMARK 465 ASP A 97 REMARK 465 ALA A 98 REMARK 465 GLU A 99 REMARK 465 PHE A 100 REMARK 465 GLN A 101 REMARK 465 GLU A 102 REMARK 465 ARG A 103 REMARK 465 LEU A 104 REMARK 465 LYS A 105 REMARK 465 GLU A 106 REMARK 465 ASP A 107 REMARK 465 THR A 108 REMARK 465 SER A 109 REMARK 465 PHE A 110 REMARK 465 GLY A 111 REMARK 465 GLY A 112 REMARK 465 ASN A 113 REMARK 465 LEU A 114 REMARK 465 GLY A 115 REMARK 465 ARG A 116 REMARK 465 ALA A 117 REMARK 465 VAL A 118 REMARK 465 PHE A 119 REMARK 465 GLN A 120 REMARK 465 ALA A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 ARG A 124 REMARK 465 LEU A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 PRO A 128 REMARK 465 LEU A 129 REMARK 465 GLY A 130 REMARK 465 LEU A 131 REMARK 465 VAL A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 LYS A 137 REMARK 465 THR A 138 REMARK 465 ALA A 139 REMARK 465 PRO A 140 REMARK 465 GLY A 141 REMARK 465 LYS A 142 REMARK 465 LYS A 143 REMARK 465 ARG A 144 REMARK 465 PRO A 145 REMARK 465 VAL A 146 REMARK 465 GLU A 147 REMARK 465 HIS A 148 REMARK 465 SER A 149 REMARK 465 PRO A 150 REMARK 465 VAL A 151 REMARK 465 GLU A 152 REMARK 465 PRO A 153 REMARK 465 ASP A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 THR A 159 REMARK 465 GLY A 160 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 GLY A 163 REMARK 465 GLN A 164 REMARK 465 GLN A 165 REMARK 465 PRO A 166 REMARK 465 ALA A 167 REMARK 465 ARG A 168 REMARK 465 LYS A 169 REMARK 465 ARG A 170 REMARK 465 LEU A 171 REMARK 465 ASN A 172 REMARK 465 PHE A 173 REMARK 465 GLY A 174 REMARK 465 GLN A 175 REMARK 465 THR A 176 REMARK 465 GLY A 177 REMARK 465 ASP A 178 REMARK 465 ALA A 179 REMARK 465 ASP A 180 REMARK 465 SER A 181 REMARK 465 VAL A 182 REMARK 465 PRO A 183 REMARK 465 ASP A 184 REMARK 465 PRO A 185 REMARK 465 GLN A 186 REMARK 465 PRO A 187 REMARK 465 ILE A 188 REMARK 465 GLY A 189 REMARK 465 GLU A 190 REMARK 465 PRO A 191 REMARK 465 PRO A 192 REMARK 465 ALA A 193 REMARK 465 ALA A 194 REMARK 465 PRO A 195 REMARK 465 SER A 196 REMARK 465 GLY A 197 REMARK 465 VAL A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 LEU A 201 REMARK 465 THR A 202 REMARK 465 MET A 203 REMARK 465 ALA A 204 REMARK 465 ALA A 205 REMARK 465 GLY A 206 REMARK 465 GLY A 207 REMARK 465 GLY A 208 REMARK 465 ALA A 209 REMARK 465 PRO A 210 REMARK 465 MET A 211 REMARK 465 ALA A 212 REMARK 465 ASP A 213 REMARK 465 ASN A 214 REMARK 465 ASN A 215 REMARK 465 GLU A 216 REMARK 465 GLY A 217 REMARK 465 ALA A 218 REMARK 465 ASP A 219 REMARK 465 GLY A 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 263 N SER A 265 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 265 N - CA - C ANGL. DEV. = 23.1 DEGREES REMARK 500 GLY A 266 N - CA - C ANGL. DEV. = -25.3 DEGREES REMARK 500 GLY A 267 N - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 483 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO A 632 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 253 29.56 48.52 REMARK 500 ASN A 262 92.84 -59.35 REMARK 500 SER A 263 -110.42 -137.32 REMARK 500 THR A 264 55.97 -63.04 REMARK 500 SER A 265 -154.78 -51.69 REMARK 500 SER A 269 116.13 -165.65 REMARK 500 PRO A 280 2.12 -60.90 REMARK 500 HIS A 290 6.70 -55.01 REMARK 500 LEU A 338 -13.11 -47.73 REMARK 500 GLN A 376 -179.70 -60.15 REMARK 500 GLU A 398 3.53 -63.77 REMARK 500 PHE A 417 -170.07 -59.31 REMARK 500 THR A 456 63.79 -117.70 REMARK 500 PRO A 481 173.80 -56.84 REMARK 500 SER A 539 38.27 -141.67 REMARK 500 HIS A 631 59.78 39.62 REMARK 500 PRO A 632 6.94 -47.55 REMARK 500 PRO A 660 170.27 -56.81 REMARK 500 GLU A 699 -173.68 -64.48 REMARK 500 ASN A 717 173.61 -54.56 REMARK 500 THR A 718 1.02 -56.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5415 RELATED DB: EMDB DBREF 3J1Q A 1 737 PDB 3J1Q 3J1Q 1 737 SEQRES 1 A 737 MET ALA ALA ASP GLY TYR LEU PRO ASP TRP LEU GLU ASP SEQRES 2 A 737 THR LEU SER GLU GLY ILE ARG GLN TRP TRP LYS LEU LYS SEQRES 3 A 737 PRO GLY PRO PRO PRO PRO LYS PRO ALA GLU ARG HIS LYS SEQRES 4 A 737 ASP ASP SER ARG GLY LEU VAL LEU PRO GLY TYR LYS TYR SEQRES 5 A 737 LEU GLY PRO PHE ASN GLY LEU ASP LYS GLY GLU PRO VAL SEQRES 6 A 737 ASN GLU ALA ASP ALA ALA ALA LEU GLU HIS ASP LYS ALA SEQRES 7 A 737 TYR ASP ARG GLN LEU ASP SER GLY ASP ASN PRO TYR LEU SEQRES 8 A 737 LYS TYR ASN HIS ALA ASP ALA GLU PHE GLN GLU ARG LEU SEQRES 9 A 737 LYS GLU ASP THR SER PHE GLY GLY ASN LEU GLY ARG ALA SEQRES 10 A 737 VAL PHE GLN ALA LYS LYS ARG LEU LEU GLU PRO LEU GLY SEQRES 11 A 737 LEU VAL GLU GLU ALA ALA LYS THR ALA PRO GLY LYS LYS SEQRES 12 A 737 ARG PRO VAL GLU HIS SER PRO VAL GLU PRO ASP SER SER SEQRES 13 A 737 SER GLY THR GLY LYS ALA GLY GLN GLN PRO ALA ARG LYS SEQRES 14 A 737 ARG LEU ASN PHE GLY GLN THR GLY ASP ALA ASP SER VAL SEQRES 15 A 737 PRO ASP PRO GLN PRO ILE GLY GLU PRO PRO ALA ALA PRO SEQRES 16 A 737 SER GLY VAL GLY SER LEU THR MET ALA ALA GLY GLY GLY SEQRES 17 A 737 ALA PRO MET ALA ASP ASN ASN GLU GLY ALA ASP GLY VAL SEQRES 18 A 737 GLY ASN SER SER GLY ASN TRP HIS CYS ASP SER THR TRP SEQRES 19 A 737 MET GLY ASP ARG VAL ILE THR THR SER THR ARG THR TRP SEQRES 20 A 737 ALA LEU PRO THR TYR ASN ASN HIS LEU TYR LYS GLN ILE SEQRES 21 A 737 SER ASN SER THR SER GLY GLY SER SER ASN ASP ASN ALA SEQRES 22 A 737 TYR PHE GLY TYR SER THR PRO TRP GLY TYR PHE ASP PHE SEQRES 23 A 737 ASN ARG PHE HIS CYS HIS PHE SER PRO ARG ASP TRP GLN SEQRES 24 A 737 ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG PRO LYS ARG SEQRES 25 A 737 LEU SER PHE LYS LEU PHE ASN ILE GLN VAL LYS GLU VAL SEQRES 26 A 737 THR GLN ASN GLU GLY THR LYS THR ILE ALA ASN ASN LEU SEQRES 27 A 737 THR SER THR ILE GLN VAL PHE THR ASP SER GLU TYR GLN SEQRES 28 A 737 LEU PRO TYR VAL LEU GLY SER ALA HIS GLN GLY CYS LEU SEQRES 29 A 737 PRO PRO PHE PRO ALA ASP VAL PHE MET ILE PRO GLN TYR SEQRES 30 A 737 GLY TYR LEU THR LEU ASN ASN GLY SER GLN ALA VAL GLY SEQRES 31 A 737 ARG SER SER PHE TYR CYS LEU GLU TYR PHE PRO SER GLN SEQRES 32 A 737 MET LEU ARG THR GLY ASN ASN PHE GLN PHE THR TYR THR SEQRES 33 A 737 PHE GLU ASP VAL PRO PHE HIS SER SER TYR ALA HIS SER SEQRES 34 A 737 GLN SER LEU ASP ARG LEU MET ASN PRO LEU ILE ASP GLN SEQRES 35 A 737 TYR LEU TYR TYR LEU SER ARG THR GLN THR THR GLY GLY SEQRES 36 A 737 THR THR ASN THR GLN THR LEU GLY PHE SER GLN GLY GLY SEQRES 37 A 737 PRO ASN THR MET ALA ASN GLN ALA LYS ASN TRP LEU PRO SEQRES 38 A 737 GLY PRO CYS TYR ARG GLN GLN ARG VAL SER LYS THR SER SEQRES 39 A 737 ALA ASP ASN ASN ASN SER GLU TYR SER TRP THR GLY ALA SEQRES 40 A 737 THR LYS TYR HIS LEU ASN GLY ARG ASP SER LEU VAL ASN SEQRES 41 A 737 PRO GLY PRO ALA MET ALA SER HIS LYS ASP ASP GLU GLU SEQRES 42 A 737 LYS PHE PHE PRO GLN SER GLY VAL LEU ILE PHE GLY LYS SEQRES 43 A 737 GLN GLY SER GLU LYS THR ASN VAL ASP ILE GLU LYS VAL SEQRES 44 A 737 MET ILE THR ASP GLU GLU GLU ILE ARG THR THR ASN PRO SEQRES 45 A 737 VAL ALA THR GLU GLN TYR GLY SER VAL SER THR ASN LEU SEQRES 46 A 737 GLN ARG GLY ASN ARG GLN ALA ALA THR ALA ASP VAL ASN SEQRES 47 A 737 THR GLN GLY VAL LEU PRO GLY MET VAL TRP GLN ASP ARG SEQRES 48 A 737 ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA LYS ILE PRO SEQRES 49 A 737 HIS THR ASP GLY HIS PHE HIS PRO SER PRO LEU MET GLY SEQRES 50 A 737 GLY PHE GLY LEU LYS HIS PRO PRO PRO GLN ILE LEU ILE SEQRES 51 A 737 LYS ASN THR PRO VAL PRO ALA ASP PRO PRO THR THR PHE SEQRES 52 A 737 ASN GLN SER LYS LEU ASN SER PHE ILE THR GLN TYR SER SEQRES 53 A 737 THR GLY GLN VAL SER VAL GLU ILE GLU TRP GLU LEU GLN SEQRES 54 A 737 LYS GLU ASN SER LYS ARG TRP ASN PRO GLU ILE GLN TYR SEQRES 55 A 737 THR SER ASN TYR TYR LYS SER THR SER VAL ASP PHE ALA SEQRES 56 A 737 VAL ASN THR GLU GLY VAL TYR SER GLU PRO ARG PRO ILE SEQRES 57 A 737 GLY THR ARG TYR LEU THR ARG ASN LEU HELIX 1 1 SER A 294 ASN A 303 1 10 HELIX 2 2 CYS A 396 PHE A 400 5 5 HELIX 3 3 THR A 471 GLN A 475 5 5 HELIX 4 4 THR A 493 ASN A 497 5 5 HELIX 5 5 ASP A 555 GLU A 557 5 3 HELIX 6 6 GLU A 564 ARG A 568 5 5 SHEET 1 A 5 SER A 232 TRP A 234 0 SHEET 2 A 5 ARG A 238 THR A 242 -1 O ILE A 240 N THR A 233 SHEET 3 A 5 GLN A 674 LYS A 690 -1 O ILE A 684 N THR A 241 SHEET 4 A 5 ASN A 305 GLU A 324 -1 N LYS A 323 O TYR A 675 SHEET 5 A 5 PHE A 411 THR A 416 -1 O TYR A 415 N LEU A 313 SHEET 1 B 5 VAL A 371 MET A 373 0 SHEET 2 B 5 ARG A 245 LEU A 249 1 N THR A 246 O PHE A 372 SHEET 3 B 5 GLN A 674 LYS A 690 -1 O GLY A 678 N TRP A 247 SHEET 4 B 5 ASN A 305 GLU A 324 -1 N LYS A 323 O TYR A 675 SHEET 5 B 5 HIS A 423 SER A 424 -1 O HIS A 423 N PHE A 308 SHEET 1 C 5 GLN A 376 LEU A 380 0 SHEET 2 C 5 GLY A 276 TYR A 283 -1 N THR A 279 O TYR A 377 SHEET 3 C 5 ILE A 648 ASN A 652 -1 O ILE A 650 N GLY A 282 SHEET 4 C 5 THR A 341 THR A 346 -1 N PHE A 345 O LEU A 649 SHEET 5 C 5 GLN A 403 ARG A 406 -1 O LEU A 405 N ILE A 342 SHEET 1 D 2 THR A 326 ASN A 328 0 SHEET 2 D 2 THR A 331 THR A 333 -1 O THR A 331 N ASN A 328 SHEET 1 E 2 ASN A 383 ASN A 384 0 SHEET 2 E 2 GLN A 387 ALA A 388 -1 O GLN A 387 N ASN A 384 SHEET 1 F 2 ALA A 427 HIS A 428 0 SHEET 2 F 2 THR A 734 ARG A 735 1 O ARG A 735 N ALA A 427 SHEET 1 G 2 GLN A 442 GLN A 451 0 SHEET 2 G 2 GLN A 460 GLY A 467 -1 O GLY A 463 N SER A 448 SHEET 1 H 2 CYS A 484 TYR A 485 0 SHEET 2 H 2 THR A 599 GLN A 600 -1 O GLN A 600 N CYS A 484 SHEET 1 I 2 ARG A 489 SER A 491 0 SHEET 2 I 2 PHE A 535 PRO A 537 -1 O PHE A 536 N VAL A 490 SHEET 1 J 2 LYS A 509 LEU A 512 0 SHEET 2 J 2 ARG A 515 LEU A 518 -1 O SER A 517 N TYR A 510 SHEET 1 K 2 ILE A 543 GLY A 545 0 SHEET 2 K 2 VAL A 559 ILE A 561 -1 O MET A 560 N PHE A 544 SHEET 1 L 2 GLY A 579 VAL A 581 0 SHEET 2 L 2 ALA A 595 VAL A 597 -1 O ALA A 595 N VAL A 581 SHEET 1 M 2 TRP A 620 LYS A 622 0 SHEET 2 M 2 PHE A 639 LEU A 641 1 O PHE A 639 N ALA A 621 CISPEP 1 ASN A 520 PRO A 521 0 0.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000