HEADER RIBOSOME/TRANSLATION 15-NOV-13 3J5S TITLE ETTA BINDS TO RIBOSOME EXIT SITE AND REGULATES TRANSLATION BY TITLE 2 RESTRICTING RIBOSOME AND TRNA DYNAMICS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16S RIBOSOMAL RNA; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 23S RIBOSOMAL RNA; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: SEE REMARK 999; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: P-SITE TRNA FMET; COMPND 11 CHAIN: E; COMPND 12 MOL_ID: 4; COMPND 13 MOLECULE: ENERGY-DEPENDENT TRANSLATIONAL THROTTLE A (ETTA); COMPND 14 CHAIN: D; COMPND 15 SYNONYM: ABC TRANSPORTER ATP-BINDING PROTEIN YJJK; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: 50S RIBOSOMAL PROTEIN L1; COMPND 19 CHAIN: F; COMPND 20 MOL_ID: 6; COMPND 21 MOLECULE: 50S RIBOSOMAL PROTEIN L5; COMPND 22 CHAIN: G; COMPND 23 MOL_ID: 7; COMPND 24 MOLECULE: 50S RIBOSOMAL PROTEIN L33; COMPND 25 CHAIN: H; COMPND 26 MOL_ID: 8; COMPND 27 MOLECULE: 30S RIBOSOMAL PROTEIN S7; COMPND 28 CHAIN: I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: MRE600; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 STRAIN: MRE600; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 511145; SOURCE 15 STRAIN: K12 SUBSTR. MG1655; SOURCE 16 GENE: YJJK; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 511145; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: K12 SUBSTR. MG1655; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 22 MOL_ID: 5; SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 24 ORGANISM_TAXID: 562; SOURCE 25 STRAIN: MRE600; SOURCE 26 MOL_ID: 6; SOURCE 27 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 28 ORGANISM_TAXID: 562; SOURCE 29 STRAIN: MRE600; SOURCE 30 MOL_ID: 7; SOURCE 31 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 32 ORGANISM_TAXID: 562; SOURCE 33 STRAIN: MRE600; SOURCE 34 MOL_ID: 8; SOURCE 35 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 36 ORGANISM_TAXID: 562; SOURCE 37 STRAIN: MRE600 KEYWDS PROTEIN TRANSLATION REGULATION, ABC-F PROTEIN FAMILY, SINGLE-MOLECULE KEYWDS 2 FRET, YJJK, RIBOSOME-TRANSLATION COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.HASHEM REVDAT 5 21-FEB-24 3J5S 1 REMARK SEQADV REVDAT 4 18-JUL-18 3J5S 1 REMARK REVDAT 3 19-FEB-14 3J5S 1 JRNL REVDAT 2 22-JAN-14 3J5S 1 JRNL REMARK REVDAT 1 08-JAN-14 3J5S 0 JRNL AUTH B.CHEN,G.BOEL,Y.HASHEM,W.NING,J.FEI,C.WANG,R.L.GONZALEZ, JRNL AUTH 2 J.F.HUNT,J.FRANK JRNL TITL ETTA REGULATES TRANSLATION BY BINDING THE RIBOSOMAL E SITE JRNL TITL 2 AND RESTRICTING RIBOSOME-TRNA DYNAMICS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 152 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24389465 JRNL DOI 10.1038/NSMB.2741 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.BOEL,P.C.SMITH,W.NING,M.T.ENGLANDER,B.CHEN,Y.HASHEM, REMARK 1 AUTH 2 A.J.TESTA,J.J.FISCHER,H.J.WIEDEN,J.FRANK,R.L.GONZALEZ, REMARK 1 AUTH 3 J.F.HUNT REMARK 1 TITL THE ABC-F PROTEIN ETTA GATES RIBOSOME ENTRY INTO THE REMARK 1 TITL 2 TRANSLATION ELONGATION CYCLE. REMARK 1 REF NAT.STRUCT.MOL.BIOL. 2014 REMARK 1 REFN ESSN 1545-9985 REMARK 1 PMID 24389466 REMARK 1 DOI 10.1038/NSMB.2740 REMARK 2 REMARK 2 RESOLUTION. 7.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NAMD, RELION, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3R8O REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE DETAILS- REMARK 3 -PROTOCOL- MOLECULAR DYNAMICS FLEXIBLE FITTING REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.712 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.500 REMARK 3 NUMBER OF PARTICLES : 39316 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBSET AFTER RELION 3D CLASSIFICATION REMARK 4 REMARK 4 3J5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000160286. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : E. COLI 70S RIBOSOME COMPLEX REMARK 245 70S-(ETTA-EQ2)-(FMET-TRNA)-(PHE-TRNA); 70S RIBOSOME; ENERGY- REMARK 245 DEPENDENT TRANSLATIONAL THROTTLE A (ETTA); FMET-TRNA; PHE-TRNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.20 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL R2/4 300 MESH CU EM REMARK 245 GRID, COATED WITH THIN CARBON REMARK 245 FILM, GLOW DISCHARGED IN H2/O2 REMARK 245 SAMPLE VITRIFICATION DETAILS : WAIT TIME 30 SEC, BLOT TIME 8 REMARK 245 SEC (4 C), PLUNGE INTO LIQUID REMARK 245 ETHANE (FEI VITROBOT MARK IV) REMARK 245 SAMPLE BUFFER : 50 MM TRIS ACETATE, 100 MM KCL, REMARK 245 5 MM NH4OAC, 3.5 MM MG(OAC)2, REMARK 245 0.5 MM CA(OAC)2, 0.1 MM EDTA, 1 REMARK 245 MM SPERMIDINE, 5 MM PUTRESCINE, REMARK 245 6 MM 2-MERCAPTOETHANOL, 0.5 MM REMARK 245 MG-ATP REMARK 245 PH : 6.90 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 05-APR-13 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 80.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1700.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 80000 REMARK 245 CALIBRATED MAGNIFICATION : 110637 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, E, D, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A B 1246 REMARK 465 U B 1247 REMARK 465 A B 1248 REMARK 465 C B 1249 REMARK 465 A B 1250 REMARK 465 A B 1251 REMARK 465 A B 1252 REMARK 465 G B 1253 REMARK 465 A B 1254 REMARK 465 G B 1255 REMARK 465 A B 1256 REMARK 465 A B 1257 REMARK 465 G B 1258 REMARK 465 C B 1259 REMARK 465 G B 1260 REMARK 465 A B 1261 REMARK 465 C B 1262 REMARK 465 C B 1263 REMARK 465 U B 1264 REMARK 465 C B 1265 REMARK 465 G B 1266 REMARK 465 C B 1267 REMARK 465 G B 1268 REMARK 465 A B 1269 REMARK 465 G B 1270 REMARK 465 A B 1271 REMARK 465 G B 1272 REMARK 465 C B 1273 REMARK 465 A B 1274 REMARK 465 A B 1275 REMARK 465 G B 1276 REMARK 465 C B 1277 REMARK 465 G B 1278 REMARK 465 G B 1279 REMARK 465 A B 1280 REMARK 465 C B 1281 REMARK 465 C B 1282 REMARK 465 U B 1283 REMARK 465 C B 1284 REMARK 465 A B 1285 REMARK 465 U B 1286 REMARK 465 A B 1287 REMARK 465 A B 1288 REMARK 465 A B 1306 REMARK 465 U B 1307 REMARK 465 U B 1308 REMARK 465 G B 1309 REMARK 465 G B 1310 REMARK 465 A B 1311 REMARK 465 G B 1312 REMARK 465 U B 1313 REMARK 465 C B 1314 REMARK 465 U B 1315 REMARK 465 G B 1316 REMARK 465 C B 1317 REMARK 465 A B 1318 REMARK 465 A B 1319 REMARK 465 C B 1320 REMARK 465 U B 1321 REMARK 465 C B 1322 REMARK 465 G B 1323 REMARK 465 A B 1324 REMARK 465 C B 1325 REMARK 465 U B 1326 REMARK 465 C B 1327 REMARK 465 C B 1328 REMARK 465 A B 1329 REMARK 465 U B 1330 REMARK 465 G B 1331 REMARK 465 C A 1908 REMARK 465 C A 1909 REMARK 465 G A 1910 REMARK 465 U A 1911 REMARK 465 A A 1912 REMARK 465 A A 1913 REMARK 465 C A 1914 REMARK 465 U A 1915 REMARK 465 A A 1916 REMARK 465 U A 1917 REMARK 465 A A 1918 REMARK 465 A A 1919 REMARK 465 C A 1920 REMARK 465 G A 1921 REMARK 465 G A 1922 REMARK 465 U A 1923 REMARK 465 C A 1924 REMARK 465 C A 1925 REMARK 465 U A 1926 REMARK 465 A A 1927 REMARK 465 A A 1928 REMARK 465 G A 1929 REMARK 465 G A 1930 REMARK 465 U A 1931 REMARK 465 A A 1932 REMARK 465 G A 1933 REMARK 465 C A 1934 REMARK 465 G A 1935 REMARK 465 A A 1936 REMARK 465 A A 1937 REMARK 465 A A 1938 REMARK 465 U A 1939 REMARK 465 U A 1940 REMARK 465 C A 1941 REMARK 465 C A 1942 REMARK 465 U A 1943 REMARK 465 U A 1944 REMARK 465 G A 1945 REMARK 465 U A 1946 REMARK 465 C A 1947 REMARK 465 G A 1948 REMARK 465 G A 1949 REMARK 465 G A 1950 REMARK 465 U A 1951 REMARK 465 A A 1952 REMARK 465 A A 1953 REMARK 465 G A 1954 REMARK 465 U A 1955 REMARK 465 U A 1956 REMARK 465 C A 1957 REMARK 465 C A 1958 REMARK 465 G A 1959 REMARK 465 A A 1960 REMARK 465 C A 1961 REMARK 465 C A 1962 REMARK 465 U A 1963 REMARK 465 G A 1964 REMARK 465 C A 1965 REMARK 465 A A 1966 REMARK 465 C A 1967 REMARK 465 G A 1968 REMARK 465 A A 1969 REMARK 465 A A 1970 REMARK 465 U A 1971 REMARK 465 G A 1972 REMARK 465 G A 1973 REMARK 465 C A 1974 REMARK 465 G A 1975 REMARK 465 U A 1976 REMARK 465 A A 1977 REMARK 465 A A 1978 REMARK 465 U A 1979 REMARK 465 G A 1980 REMARK 465 A A 1981 REMARK 465 U A 1982 REMARK 465 G A 1983 REMARK 465 G A 1984 REMARK 465 C A 1985 REMARK 465 C A 1986 REMARK 465 A A 1987 REMARK 465 G A 1988 REMARK 465 G A 1989 REMARK 465 C A 1990 REMARK 465 U A 1991 REMARK 465 G A 1992 REMARK 465 U A 1993 REMARK 465 C A 1994 REMARK 465 U A 1995 REMARK 465 C A 1996 REMARK 465 C A 1997 REMARK 465 A A 1998 REMARK 465 C A 1999 REMARK 465 C A 2000 REMARK 465 C A 2001 REMARK 465 G A 2002 REMARK 465 A A 2003 REMARK 465 G A 2004 REMARK 465 A A 2005 REMARK 465 C A 2006 REMARK 465 U A 2007 REMARK 465 C A 2008 REMARK 465 A A 2009 REMARK 465 G A 2010 REMARK 465 U A 2011 REMARK 465 G A 2012 REMARK 465 A A 2013 REMARK 465 A A 2014 REMARK 465 A A 2015 REMARK 465 U A 2016 REMARK 465 U A 2017 REMARK 465 G A 2018 REMARK 465 A A 2019 REMARK 465 A A 2020 REMARK 465 C A 2021 REMARK 465 U A 2022 REMARK 465 C A 2023 REMARK 465 G A 2024 REMARK 465 C A 2025 REMARK 465 U A 2026 REMARK 465 G A 2027 REMARK 465 U A 2028 REMARK 465 G A 2029 REMARK 465 A A 2030 REMARK 465 A A 2031 REMARK 465 G A 2032 REMARK 465 A A 2033 REMARK 465 U A 2034 REMARK 465 G A 2035 REMARK 465 C A 2036 REMARK 465 A A 2037 REMARK 465 G A 2038 REMARK 465 U A 2039 REMARK 465 G A 2040 REMARK 465 U A 2041 REMARK 465 A A 2042 REMARK 465 C A 2043 REMARK 465 C A 2044 REMARK 465 C A 2045 REMARK 465 G A 2046 REMARK 465 C A 2047 REMARK 465 G A 2048 REMARK 465 G A 2049 REMARK 465 C A 2050 REMARK 465 A A 2051 REMARK 465 A A 2052 REMARK 465 G A 2053 REMARK 465 A A 2054 REMARK 465 C A 2055 REMARK 465 G A 2056 REMARK 465 G A 2057 REMARK 465 A A 2058 REMARK 465 A A 2059 REMARK 465 A A 2060 REMARK 465 G A 2061 REMARK 465 A A 2062 REMARK 465 C A 2063 REMARK 465 C A 2064 REMARK 465 C A 2065 REMARK 465 C A 2066 REMARK 465 G A 2067 REMARK 465 U A 2068 REMARK 465 G A 2069 REMARK 465 A A 2070 REMARK 465 A A 2071 REMARK 465 C A 2072 REMARK 465 C A 2073 REMARK 465 U A 2074 REMARK 465 U A 2075 REMARK 465 U A 2076 REMARK 465 A A 2077 REMARK 465 C A 2078 REMARK 465 U A 2079 REMARK 465 A A 2080 REMARK 465 U A 2081 REMARK 465 A A 2082 REMARK 465 G A 2083 REMARK 465 C A 2084 REMARK 465 U A 2085 REMARK 465 U A 2086 REMARK 465 G A 2087 REMARK 465 A A 2088 REMARK 465 C A 2089 REMARK 465 A A 2090 REMARK 465 C A 2091 REMARK 465 U A 2092 REMARK 465 G A 2093 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 536 NH2 ARG I 137 1.65 REMARK 500 O2' C E 72 O GLN D 278 1.89 REMARK 500 O GLU D 130 OG SER F 55 1.90 REMARK 500 CA TYR D 108 CB PRO F 118 1.94 REMARK 500 CB TYR D 533 O ASN I 129 1.96 REMARK 500 N3 A A 2169 OD1 ASN D 141 1.97 REMARK 500 O2 U B 1240 CG2 THR I 37 2.03 REMARK 500 C2 U A 2113 OE1 GLN D 143 2.03 REMARK 500 OE1 GLU D 129 CA GLY F 143 2.03 REMARK 500 N2 G A 1907 O3' G E 12 2.08 REMARK 500 O2 U A 2113 NE ARG D 146 2.08 REMARK 500 CB TYR D 108 O PRO F 118 2.10 REMARK 500 C4 U B 1240 CG1 VAL I 31 2.11 REMARK 500 N ASN D 526 OE2 GLU D 529 2.13 REMARK 500 OE2 GLU D 529 NZ LYS I 135 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B1236 C4 A B1236 C5 0.091 REMARK 500 C B1237 N3 C B1237 C4 -0.055 REMARK 500 C B1237 O3' A B1238 P -0.081 REMARK 500 A B1238 C6 A B1238 N1 0.042 REMARK 500 A B1238 C5 A B1238 N7 0.045 REMARK 500 A B1238 C6 A B1238 N6 0.053 REMARK 500 A B1239 C1' A B1239 N9 -0.086 REMARK 500 A B1239 N9 A B1239 C4 0.048 REMARK 500 A B1239 O3' U B1240 P -0.111 REMARK 500 G B1241 N3 G B1241 C4 -0.043 REMARK 500 G B1241 C5 G B1241 N7 -0.036 REMARK 500 G B1242 N7 G B1242 C8 -0.081 REMARK 500 C B1243 C5' C B1243 C4' 0.073 REMARK 500 C B1243 N3 C B1243 C4 0.047 REMARK 500 G B1244 O3' C B1245 P -0.072 REMARK 500 C B1245 C4' C B1245 C3' 0.073 REMARK 500 C B1245 C2' C B1245 C1' -0.062 REMARK 500 C B1245 N3 C B1245 C4 0.060 REMARK 500 A B1289 C5' A B1289 C4' 0.098 REMARK 500 G B1290 C4' G B1290 C3' 0.098 REMARK 500 G B1290 C5 G B1290 N7 0.065 REMARK 500 G B1290 N9 G B1290 C4 0.073 REMARK 500 U B1291 C2' U B1291 C1' -0.063 REMARK 500 G B1292 C8 G B1292 N9 0.044 REMARK 500 G B1292 O3' C B1293 P -0.080 REMARK 500 G B1294 P G B1294 O5' -0.060 REMARK 500 G B1294 C3' G B1294 C2' -0.094 REMARK 500 G B1294 C8 G B1294 N9 0.043 REMARK 500 U B1295 C4' U B1295 C3' -0.082 REMARK 500 U B1295 O4' U B1295 C4' 0.066 REMARK 500 U B1295 C2 U B1295 N3 0.042 REMARK 500 G B1297 C5 G B1297 N7 0.048 REMARK 500 G B1297 N7 G B1297 C8 0.039 REMARK 500 G B1297 C8 G B1297 N9 0.111 REMARK 500 G B1297 N9 G B1297 C4 0.057 REMARK 500 G B1297 C2 G B1297 N2 -0.083 REMARK 500 U B1298 C2' U B1298 C1' -0.104 REMARK 500 U B1298 N3 U B1298 C4 -0.055 REMARK 500 A B1299 P A B1299 O5' -0.064 REMARK 500 A B1299 N3 A B1299 C4 0.043 REMARK 500 A B1299 C6 A B1299 N1 -0.070 REMARK 500 A B1299 N9 A B1299 C4 -0.052 REMARK 500 G B1300 C8 G B1300 N9 -0.053 REMARK 500 U B1301 P U B1301 O5' -0.082 REMARK 500 U B1301 C2 U B1301 N3 0.054 REMARK 500 C B1302 C2' C B1302 C1' -0.056 REMARK 500 C B1302 C4 C B1302 N4 -0.065 REMARK 500 C B1303 P C B1303 O5' -0.092 REMARK 500 C B1303 N1 C B1303 C6 0.041 REMARK 500 G B1304 O4' G B1304 C4' 0.078 REMARK 500 REMARK 500 THIS ENTRY HAS 517 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B1236 C3' - C2' - C1' ANGL. DEV. = -4.4 DEGREES REMARK 500 A B1236 N1 - C6 - N6 ANGL. DEV. = 11.9 DEGREES REMARK 500 A B1236 C5 - C6 - N6 ANGL. DEV. = -9.8 DEGREES REMARK 500 C B1237 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 A B1238 C6 - N1 - C2 ANGL. DEV. = -4.4 DEGREES REMARK 500 A B1238 N1 - C6 - N6 ANGL. DEV. = -6.9 DEGREES REMARK 500 A B1238 C5 - C6 - N6 ANGL. DEV. = 6.2 DEGREES REMARK 500 U B1240 C5' - C4' - C3' ANGL. DEV. = -9.2 DEGREES REMARK 500 U B1240 C5 - C4 - O4 ANGL. DEV. = -3.7 DEGREES REMARK 500 G B1241 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G B1241 C2 - N3 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 G B1241 C5 - C6 - N1 ANGL. DEV. = -3.5 DEGREES REMARK 500 G B1241 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 G B1241 N1 - C6 - O6 ANGL. DEV. = 7.4 DEGREES REMARK 500 G B1241 C5 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 G B1241 C4 - N9 - C1' ANGL. DEV. = 7.9 DEGREES REMARK 500 G B1242 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 G B1242 N1 - C2 - N3 ANGL. DEV. = -4.2 DEGREES REMARK 500 G B1242 N3 - C4 - C5 ANGL. DEV. = 4.8 DEGREES REMARK 500 G B1242 C4 - C5 - C6 ANGL. DEV. = -3.7 DEGREES REMARK 500 G B1242 N9 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 G B1242 N1 - C6 - O6 ANGL. DEV. = 3.7 DEGREES REMARK 500 G B1242 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES REMARK 500 C B1243 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 C B1243 C6 - N1 - C2 ANGL. DEV. = 3.1 DEGREES REMARK 500 C B1243 C5 - C4 - N4 ANGL. DEV. = -5.6 DEGREES REMARK 500 G B1244 C4 - C5 - N7 ANGL. DEV. = 3.0 DEGREES REMARK 500 G B1244 C5 - N7 - C8 ANGL. DEV. = -3.0 DEGREES REMARK 500 C B1245 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 C B1245 C2 - N3 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 C B1245 C4 - C5 - C6 ANGL. DEV. = -3.8 DEGREES REMARK 500 C B1245 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 A B1289 C3' - C2' - C1' ANGL. DEV. = -4.5 DEGREES REMARK 500 A B1289 N1 - C2 - N3 ANGL. DEV. = -4.2 DEGREES REMARK 500 A B1289 C2 - N3 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 G B1290 O4' - C1' - N9 ANGL. DEV. = 9.2 DEGREES REMARK 500 G B1290 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 G B1290 C4 - C5 - C6 ANGL. DEV. = 4.5 DEGREES REMARK 500 G B1290 C4 - C5 - N7 ANGL. DEV. = -4.5 DEGREES REMARK 500 G B1290 C5 - N7 - C8 ANGL. DEV. = 3.0 DEGREES REMARK 500 G B1290 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G B1290 N9 - C4 - C5 ANGL. DEV. = 3.1 DEGREES REMARK 500 U B1291 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES REMARK 500 U B1291 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 G B1292 O4' - C1' - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 G B1292 C4 - C5 - N7 ANGL. DEV. = 3.2 DEGREES REMARK 500 G B1292 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 G B1292 N9 - C4 - C5 ANGL. DEV. = -4.0 DEGREES REMARK 500 G B1292 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 C B1293 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 961 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 18 -96.86 -90.85 REMARK 500 GLU D 83 -178.59 -46.91 REMARK 500 GLU D 91 -95.70 -57.54 REMARK 500 ALA D 93 -78.11 -165.30 REMARK 500 ASP D 136 -76.80 71.55 REMARK 500 LEU D 140 167.46 63.56 REMARK 500 VAL D 142 -22.47 -150.72 REMARK 500 GLN D 143 -96.16 -30.46 REMARK 500 ASP D 155 141.92 -30.89 REMARK 500 GLU D 188 72.82 35.44 REMARK 500 ASP D 194 165.61 -42.38 REMARK 500 PHE D 208 144.99 -31.91 REMARK 500 ALA D 214 -138.01 -127.03 REMARK 500 VAL D 225 -91.93 -96.07 REMARK 500 ALA D 226 67.51 60.45 REMARK 500 ASP D 233 -37.07 -158.64 REMARK 500 ASN D 243 -125.15 -164.47 REMARK 500 ARG D 283 -110.24 24.07 REMARK 500 ALA D 289 -85.06 -77.51 REMARK 500 GLU D 295 -48.05 95.40 REMARK 500 GLU D 296 -60.98 -100.14 REMARK 500 SER D 299 23.98 -167.95 REMARK 500 GLU D 301 6.55 -69.41 REMARK 500 GLU D 310 -144.79 47.03 REMARK 500 PRO D 314 120.82 -39.44 REMARK 500 PRO D 317 133.82 -16.97 REMARK 500 ASN D 432 74.94 65.51 REMARK 500 GLU D 470 74.81 27.41 REMARK 500 CYS D 493 72.22 67.63 REMARK 500 LEU F 4 87.16 11.36 REMARK 500 VAL F 15 -65.94 -133.81 REMARK 500 THR F 18 75.88 37.47 REMARK 500 ASP F 22 143.58 -38.84 REMARK 500 LYS F 37 -143.32 51.01 REMARK 500 VAL F 39 130.76 -34.04 REMARK 500 SER F 72 -3.79 -149.62 REMARK 500 VAL F 73 73.18 50.84 REMARK 500 GLU F 98 -24.88 -145.39 REMARK 500 LEU F 100 -8.16 -170.09 REMARK 500 ASN F 110 -9.88 -162.61 REMARK 500 LEU F 127 82.24 -67.12 REMARK 500 THR F 144 77.99 44.18 REMARK 500 LYS F 167 -41.57 -177.89 REMARK 500 ALA F 199 29.82 -73.61 REMARK 500 LYS F 200 148.05 -38.73 REMARK 500 GLN F 203 9.24 -172.02 REMARK 500 ALA F 204 37.09 -66.16 REMARK 500 LYS F 205 0.76 82.43 REMARK 500 LYS F 210 -68.08 -135.48 REMARK 500 SER F 232 -167.54 55.51 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO D 181 ASP D 182 -148.85 REMARK 500 LEU D 186 ASP D 187 -145.99 REMARK 500 VAL D 225 ALA D 226 108.61 REMARK 500 GLY D 316 PRO D 317 118.53 REMARK 500 ASP D 392 GLN D 393 133.77 REMARK 500 ALA D 508 THR D 509 131.17 REMARK 500 THR F 35 ALA F 36 -144.49 REMARK 500 VAL F 124 GLY F 125 -144.85 REMARK 500 GLN F 203 ALA F 204 147.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 A B1239 0.07 SIDE CHAIN REMARK 500 G B1242 0.06 SIDE CHAIN REMARK 500 C B1243 0.12 SIDE CHAIN REMARK 500 G B1290 0.10 SIDE CHAIN REMARK 500 U B1295 0.07 SIDE CHAIN REMARK 500 C B1296 0.13 SIDE CHAIN REMARK 500 U B1301 0.07 SIDE CHAIN REMARK 500 C B1302 0.15 SIDE CHAIN REMARK 500 G B1304 0.06 SIDE CHAIN REMARK 500 A B1332 0.12 SIDE CHAIN REMARK 500 G B1334 0.08 SIDE CHAIN REMARK 500 C B1336 0.08 SIDE CHAIN REMARK 500 G A1835 0.07 SIDE CHAIN REMARK 500 C A1838 0.06 SIDE CHAIN REMARK 500 G A1839 0.05 SIDE CHAIN REMARK 500 G A1840 0.07 SIDE CHAIN REMARK 500 G A1842 0.09 SIDE CHAIN REMARK 500 C A1843 0.12 SIDE CHAIN REMARK 500 G A1845 0.07 SIDE CHAIN REMARK 500 G A1846 0.11 SIDE CHAIN REMARK 500 G A1850 0.10 SIDE CHAIN REMARK 500 G A1857 0.10 SIDE CHAIN REMARK 500 A A1858 0.13 SIDE CHAIN REMARK 500 U A1859 0.13 SIDE CHAIN REMARK 500 G A1862 0.08 SIDE CHAIN REMARK 500 G A1863 0.07 SIDE CHAIN REMARK 500 U A1865 0.12 SIDE CHAIN REMARK 500 C A1868 0.07 SIDE CHAIN REMARK 500 G A1869 0.09 SIDE CHAIN REMARK 500 C A1874 0.11 SIDE CHAIN REMARK 500 A A1876 0.07 SIDE CHAIN REMARK 500 G A1878 0.06 SIDE CHAIN REMARK 500 U A1882 0.08 SIDE CHAIN REMARK 500 G A1884 0.13 SIDE CHAIN REMARK 500 U A1886 0.08 SIDE CHAIN REMARK 500 G A1888 0.11 SIDE CHAIN REMARK 500 A A1889 0.07 SIDE CHAIN REMARK 500 G A1891 0.07 SIDE CHAIN REMARK 500 C A1894 0.06 SIDE CHAIN REMARK 500 C A1895 0.06 SIDE CHAIN REMARK 500 G A1896 0.06 SIDE CHAIN REMARK 500 A A1900 0.07 SIDE CHAIN REMARK 500 A A2094 0.07 SIDE CHAIN REMARK 500 A A2095 0.07 SIDE CHAIN REMARK 500 G A2102 0.09 SIDE CHAIN REMARK 500 C A2103 0.09 SIDE CHAIN REMARK 500 C A2104 0.12 SIDE CHAIN REMARK 500 U A2106 0.11 SIDE CHAIN REMARK 500 U A2109 0.11 SIDE CHAIN REMARK 500 G A2110 0.12 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 169 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5784 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FULL RIBOSOME WAS IMAGED, BUT ONLY A SUBSET OF THE 16S AND 23S REMARK 999 RIBOSOMAL RNA WAS MODELED IN THIS ENTRY. DBREF 3J5S B 1236 1336 GB J01695.2 J01695 2503 2603 DBREF 3J5S A 1834 2193 GB 33357927 1P86_0 1834 2193 DBREF 3J5S D 1 555 UNP P0A9W3 YJJK_ECOLI 1 555 DBREF 3J5S F 1 234 UNP P0A7L0 RL1_ECOLI 1 234 DBREF 3J5S G 1 178 UNP P62399 RL5_ECOLI 2 179 DBREF 3J5S H 3 52 UNP P0A7N9 RL33_ECOLI 4 53 DBREF 3J5S I 1 151 UNP P02359 RS7_ECOLI 2 152 DBREF 3J5S E 1 77 PDB 3J5S 3J5S 1 77 SEQADV 3J5S HIS D -5 UNP P0A9W3 EXPRESSION TAG SEQADV 3J5S HIS D -4 UNP P0A9W3 EXPRESSION TAG SEQADV 3J5S HIS D -3 UNP P0A9W3 EXPRESSION TAG SEQADV 3J5S HIS D -2 UNP P0A9W3 EXPRESSION TAG SEQADV 3J5S HIS D -1 UNP P0A9W3 EXPRESSION TAG SEQADV 3J5S HIS D 0 UNP P0A9W3 EXPRESSION TAG SEQRES 1 B 101 A C A A U G G C G C A U A SEQRES 2 B 101 C A A A G A G A A G C G A SEQRES 3 B 101 C C U C G C G A G A G C A SEQRES 4 B 101 A G C G G A C C U C A U A SEQRES 5 B 101 A A G U G C G U C G U A G SEQRES 6 B 101 U C C G G A U U G G A G U SEQRES 7 B 101 C U G C A A C U C G A C U SEQRES 8 B 101 C C A U G A A G U C SEQRES 1 A 360 U G C C C G G U G C C G G SEQRES 2 A 360 A A G G U U A A U U G A U SEQRES 3 A 360 G G G G U U A G C G C A A SEQRES 4 A 360 G C G A A G C U C U U G A SEQRES 5 A 360 U C G A A G C C C C G G U SEQRES 6 A 360 A A A C G G C G G C C G U SEQRES 7 A 360 A A C U A U A A C G G U C SEQRES 8 A 360 C U A A G G U A G C G A A SEQRES 9 A 360 A U U C C U U G U C G G G SEQRES 10 A 360 U A A G U U C C G A C C U SEQRES 11 A 360 G C A C G A A U G G C G U SEQRES 12 A 360 A A U G A U G G C C A G G SEQRES 13 A 360 C U G U C U C C A C C C G SEQRES 14 A 360 A G A C U C A G U G A A A SEQRES 15 A 360 U U G A A C U C G C U G U SEQRES 16 A 360 G A A G A U G C A G U G U SEQRES 17 A 360 A C C C G C G G C A A G A SEQRES 18 A 360 C G G A A A G A C C C C G SEQRES 19 A 360 U G A A C C U U U A C U A SEQRES 20 A 360 U A G C U U G A C A C U G SEQRES 21 A 360 A A C A U U G A G C C U U SEQRES 22 A 360 G A U G U G U A G G A U A SEQRES 23 A 360 G G U G G G A G G C U U U SEQRES 24 A 360 G A A G U G U G G A C G C SEQRES 25 A 360 C A G U C U G C A U G G A SEQRES 26 A 360 G C C G A C C U U G A A A SEQRES 27 A 360 U A C C A C C C U U U A A SEQRES 28 A 360 U G U U U G A U G SEQRES 1 E 77 C G C G G G G U G G A G C SEQRES 2 E 77 A G C C U G G U A G C U C SEQRES 3 E 77 G U C G G G C U C A U A A SEQRES 4 E 77 C C C G A A G G U C G U C SEQRES 5 E 77 G G U U C A A A U C C G G SEQRES 6 E 77 C C C C C G C A A C C A SEQRES 1 D 561 HIS HIS HIS HIS HIS HIS MET ALA GLN PHE VAL TYR THR SEQRES 2 D 561 MET HIS ARG VAL GLY LYS VAL VAL PRO PRO LYS ARG HIS SEQRES 3 D 561 ILE LEU LYS ASN ILE SER LEU SER PHE PHE PRO GLY ALA SEQRES 4 D 561 LYS ILE GLY VAL LEU GLY LEU ASN GLY ALA GLY LYS SER SEQRES 5 D 561 THR LEU LEU ARG ILE MET ALA GLY ILE ASP LYS ASP ILE SEQRES 6 D 561 GLU GLY GLU ALA ARG PRO GLN PRO ASP ILE LYS ILE GLY SEQRES 7 D 561 TYR LEU PRO GLN GLU PRO GLN LEU ASN PRO GLU HIS THR SEQRES 8 D 561 VAL ARG GLU SER ILE GLU GLU ALA VAL SER GLU VAL VAL SEQRES 9 D 561 ASN ALA LEU LYS ARG LEU ASP GLU VAL TYR ALA LEU TYR SEQRES 10 D 561 ALA ASP PRO ASP ALA ASP PHE ASP LYS LEU ALA ALA GLU SEQRES 11 D 561 GLN GLY ARG LEU GLU GLU ILE ILE GLN ALA HIS ASP GLY SEQRES 12 D 561 HIS ASN LEU ASN VAL GLN LEU GLU ARG ALA ALA ASP ALA SEQRES 13 D 561 LEU ARG LEU PRO ASP TRP ASP ALA LYS ILE ALA ASN LEU SEQRES 14 D 561 SER GLY GLY GLU ARG ARG ARG VAL ALA LEU CYS ARG LEU SEQRES 15 D 561 LEU LEU GLU LYS PRO ASP MET LEU LEU LEU ASP GLU PRO SEQRES 16 D 561 THR ASN HIS LEU ASP ALA GLU SER VAL ALA TRP LEU GLU SEQRES 17 D 561 ARG PHE LEU HIS ASP PHE GLU GLY THR VAL VAL ALA ILE SEQRES 18 D 561 THR HIS ASP ARG TYR PHE LEU ASP ASN VAL ALA GLY TRP SEQRES 19 D 561 ILE LEU GLU LEU ASP ARG GLY GLU GLY ILE PRO TRP GLU SEQRES 20 D 561 GLY ASN TYR SER SER TRP LEU GLU GLN LYS ASP GLN ARG SEQRES 21 D 561 LEU ALA GLN GLU ALA SER GLN GLU ALA ALA ARG ARG LYS SEQRES 22 D 561 SER ILE GLU LYS GLU LEU GLU TRP VAL ARG GLN GLY THR SEQRES 23 D 561 LYS GLY ARG GLN SER LYS GLY LYS ALA ARG LEU ALA ARG SEQRES 24 D 561 PHE GLU GLU LEU ASN SER THR GLU TYR GLN LYS ARG ASN SEQRES 25 D 561 GLU THR ASN GLU LEU PHE ILE PRO PRO GLY PRO ARG LEU SEQRES 26 D 561 GLY ASP LYS VAL LEU GLU VAL SER ASN LEU ARG LYS SER SEQRES 27 D 561 TYR GLY ASP ARG LEU LEU ILE ASP ASP LEU SER PHE SER SEQRES 28 D 561 ILE PRO LYS GLY ALA ILE VAL GLY ILE ILE GLY PRO ASN SEQRES 29 D 561 GLY ALA GLY LYS SER THR LEU PHE ARG MET ILE SER GLY SEQRES 30 D 561 GLN GLU GLN PRO ASP SER GLY THR ILE THR LEU GLY GLU SEQRES 31 D 561 THR VAL LYS LEU ALA SER VAL ASP GLN PHE ARG ASP SER SEQRES 32 D 561 MET ASP ASN SER LYS THR VAL TRP GLU GLU VAL SER GLY SEQRES 33 D 561 GLY LEU ASP ILE MET LYS ILE GLY ASN THR GLU MET PRO SEQRES 34 D 561 SER ARG ALA TYR VAL GLY ARG PHE ASN PHE LYS GLY VAL SEQRES 35 D 561 ASP GLN GLY LYS ARG VAL GLY GLU LEU SER GLY GLY GLU SEQRES 36 D 561 ARG GLY ARG LEU HIS LEU ALA LYS LEU LEU GLN VAL GLY SEQRES 37 D 561 GLY ASN MET LEU LEU LEU ASP GLU PRO THR ASN ASP LEU SEQRES 38 D 561 ASP ILE GLU THR LEU ARG ALA LEU GLU ASN ALA LEU LEU SEQRES 39 D 561 GLU PHE PRO GLY CYS ALA MET VAL ILE SER HIS ASP ARG SEQRES 40 D 561 TRP PHE LEU ASP ARG ILE ALA THR HIS ILE LEU ASP TYR SEQRES 41 D 561 GLN ASP GLU GLY LYS VAL GLU PHE PHE GLU GLY ASN PHE SEQRES 42 D 561 THR GLU TYR GLU GLU TYR LYS LYS ARG THR LEU GLY ALA SEQRES 43 D 561 ASP ALA LEU GLU PRO LYS ARG ILE LYS TYR LYS ARG ILE SEQRES 44 D 561 ALA LYS SEQRES 1 F 234 MET ALA LYS LEU THR LYS ARG MET ARG VAL ILE ARG GLU SEQRES 2 F 234 LYS VAL ASP ALA THR LYS GLN TYR ASP ILE ASN GLU ALA SEQRES 3 F 234 ILE ALA LEU LEU LYS GLU LEU ALA THR ALA LYS PHE VAL SEQRES 4 F 234 GLU SER VAL ASP VAL ALA VAL ASN LEU GLY ILE ASP ALA SEQRES 5 F 234 ARG LYS SER ASP GLN ASN VAL ARG GLY ALA THR VAL LEU SEQRES 6 F 234 PRO HIS GLY THR GLY ARG SER VAL ARG VAL ALA VAL PHE SEQRES 7 F 234 THR GLN GLY ALA ASN ALA GLU ALA ALA LYS ALA ALA GLY SEQRES 8 F 234 ALA GLU LEU VAL GLY MET GLU ASP LEU ALA ASP GLN ILE SEQRES 9 F 234 LYS LYS GLY GLU MET ASN PHE ASP VAL VAL ILE ALA SER SEQRES 10 F 234 PRO ASP ALA MET ARG VAL VAL GLY GLN LEU GLY GLN VAL SEQRES 11 F 234 LEU GLY PRO ARG GLY LEU MET PRO ASN PRO LYS VAL GLY SEQRES 12 F 234 THR VAL THR PRO ASN VAL ALA GLU ALA VAL LYS ASN ALA SEQRES 13 F 234 LYS ALA GLY GLN VAL ARG TYR ARG ASN ASP LYS ASN GLY SEQRES 14 F 234 ILE ILE HIS THR THR ILE GLY LYS VAL ASP PHE ASP ALA SEQRES 15 F 234 ASP LYS LEU LYS GLU ASN LEU GLU ALA LEU LEU VAL ALA SEQRES 16 F 234 LEU LYS LYS ALA LYS PRO THR GLN ALA LYS GLY VAL TYR SEQRES 17 F 234 ILE LYS LYS VAL SER ILE SER THR THR MET GLY ALA GLY SEQRES 18 F 234 VAL ALA VAL ASP GLN ALA GLY LEU SER ALA SER VAL ASN SEQRES 1 G 178 ALA LYS LEU HIS ASP TYR TYR LYS ASP GLU VAL VAL LYS SEQRES 2 G 178 LYS LEU MET THR GLU PHE ASN TYR ASN SER VAL MET GLN SEQRES 3 G 178 VAL PRO ARG VAL GLU LYS ILE THR LEU ASN MET GLY VAL SEQRES 4 G 178 GLY GLU ALA ILE ALA ASP LYS LYS LEU LEU ASP ASN ALA SEQRES 5 G 178 ALA ALA ASP LEU ALA ALA ILE SER GLY GLN LYS PRO LEU SEQRES 6 G 178 ILE THR LYS ALA ARG LYS SER VAL ALA GLY PHE LYS ILE SEQRES 7 G 178 ARG GLN GLY TYR PRO ILE GLY CYS LYS VAL THR LEU ARG SEQRES 8 G 178 GLY GLU ARG MET TRP GLU PHE PHE GLU ARG LEU ILE THR SEQRES 9 G 178 ILE ALA VAL PRO ARG ILE ARG ASP PHE ARG GLY LEU SER SEQRES 10 G 178 ALA LYS SER PHE ASP GLY ARG GLY ASN TYR SER MET GLY SEQRES 11 G 178 VAL ARG GLU GLN ILE ILE PHE PRO GLU ILE ASP TYR ASP SEQRES 12 G 178 LYS VAL ASP ARG VAL ARG GLY LEU ASP ILE THR ILE THR SEQRES 13 G 178 THR THR ALA LYS SER ASP GLU GLU GLY ARG ALA LEU LEU SEQRES 14 G 178 ALA ALA PHE ASP PHE PRO PHE ARG LYS SEQRES 1 H 50 GLY ILE ARG GLU LYS ILE LYS LEU VAL SER SER ALA GLY SEQRES 2 H 50 THR GLY HIS PHE TYR THR THR THR LYS ASN LYS ARG THR SEQRES 3 H 50 LYS PRO GLU LYS LEU GLU LEU LYS LYS PHE ASP PRO VAL SEQRES 4 H 50 VAL ARG GLN HIS VAL ILE TYR LYS GLU ALA LYS SEQRES 1 I 151 PRO ARG ARG ARG VAL ILE GLY GLN ARG LYS ILE LEU PRO SEQRES 2 I 151 ASP PRO LYS PHE GLY SER GLU LEU LEU ALA LYS PHE VAL SEQRES 3 I 151 ASN ILE LEU MET VAL ASP GLY LYS LYS SER THR ALA GLU SEQRES 4 I 151 SER ILE VAL TYR SER ALA LEU GLU THR LEU ALA GLN ARG SEQRES 5 I 151 SER GLY LYS SER GLU LEU GLU ALA PHE GLU VAL ALA LEU SEQRES 6 I 151 GLU ASN VAL ARG PRO THR VAL GLU VAL LYS SER ARG ARG SEQRES 7 I 151 VAL GLY GLY SER THR TYR GLN VAL PRO VAL GLU VAL ARG SEQRES 8 I 151 PRO VAL ARG ARG ASN ALA LEU ALA MET ARG TRP ILE VAL SEQRES 9 I 151 GLU ALA ALA ARG LYS ARG GLY ASP LYS SER MET ALA LEU SEQRES 10 I 151 ARG LEU ALA ASN GLU LEU SER ASP ALA ALA GLU ASN LYS SEQRES 11 I 151 GLY THR ALA VAL LYS LYS ARG GLU ASP VAL HIS ARG MET SEQRES 12 I 151 ALA GLU ALA ASN LYS ALA PHE ALA HELIX 1 1 GLY D 44 ALA D 53 1 10 HELIX 2 2 HIS D 84 ALA D 112 1 29 HELIX 3 3 ASP D 117 ASP D 136 1 20 HELIX 4 4 VAL D 142 LEU D 151 1 10 HELIX 5 5 LYS D 159 LEU D 163 5 5 HELIX 6 6 SER D 164 LYS D 180 1 17 HELIX 7 7 ASP D 194 PHE D 208 1 15 HELIX 8 8 ASP D 218 VAL D 225 1 8 HELIX 9 9 TYR D 244 VAL D 276 1 33 HELIX 10 10 GLY D 282 ALA D 289 1 8 HELIX 11 11 SER D 299 ASN D 309 5 11 HELIX 12 12 GLY D 361 SER D 370 1 10 HELIX 13 13 THR D 403 GLY D 410 1 8 HELIX 14 14 SER D 424 ARG D 430 1 7 HELIX 15 15 LYS D 434 GLY D 439 1 6 HELIX 16 16 SER D 446 LEU D 459 1 14 HELIX 17 17 GLN D 460 GLY D 462 5 3 HELIX 18 18 ASP D 476 PHE D 490 1 15 HELIX 19 19 ASP D 500 ALA D 508 1 9 HELIX 20 20 ASN D 526 GLU D 544 1 19 HELIX 21 21 ILE D 548 ALA D 554 1 7 HELIX 22 22 THR F 5 VAL F 15 1 11 HELIX 23 23 ASP F 22 ALA F 34 1 13 HELIX 24 24 ASP F 51 SER F 55 5 5 HELIX 25 25 GLN F 80 ALA F 84 5 5 HELIX 26 26 GLN F 103 GLY F 107 5 5 HELIX 27 27 SER F 117 VAL F 124 1 8 HELIX 28 28 ASN F 148 GLY F 159 1 12 HELIX 29 29 ASP F 181 ALA F 199 1 19 HELIX 30 30 LYS G 2 THR G 17 1 16 HELIX 31 31 SER G 23 VAL G 27 5 5 HELIX 32 32 GLY G 40 ASP G 45 1 6 HELIX 33 33 ASP G 45 GLY G 61 1 17 HELIX 34 34 GLY G 92 ILE G 105 1 14 HELIX 35 35 GLU G 133 PHE G 137 5 5 HELIX 36 36 SER G 161 ALA G 171 1 11 HELIX 37 37 SER I 19 MET I 30 1 12 HELIX 38 38 LYS I 34 SER I 53 1 20 HELIX 39 39 LEU I 58 ARG I 69 1 12 HELIX 40 40 ARG I 91 ARG I 110 1 20 HELIX 41 41 SER I 114 GLU I 128 1 15 HELIX 42 42 GLY I 131 HIS I 141 1 11 HELIX 43 43 ARG I 142 ALA I 151 5 10 SHEET 1 A 3 HIS D 20 PHE D 29 0 SHEET 2 A 3 TYR D 6 VAL D 14 -1 N LYS D 13 O LEU D 22 SHEET 3 A 3 GLU D 60 PRO D 65 -1 O ARG D 64 N THR D 7 SHEET 1 B 6 ILE D 71 LEU D 74 0 SHEET 2 B 6 MET D 183 LEU D 186 1 O MET D 183 N GLY D 72 SHEET 3 B 6 THR D 211 ALA D 214 1 O VAL D 213 N LEU D 184 SHEET 4 B 6 LYS D 34 LEU D 38 1 N ILE D 35 O VAL D 212 SHEET 5 B 6 TRP D 228 LEU D 232 1 O LEU D 230 N LEU D 38 SHEET 6 B 6 GLY D 237 GLU D 241 -1 O TRP D 240 N ILE D 229 SHEET 1 C 3 ARG D 336 PRO D 347 0 SHEET 2 C 3 LYS D 322 TYR D 333 -1 N VAL D 326 O PHE D 344 SHEET 3 C 3 SER D 377 LEU D 382 -1 O THR D 379 N SER D 327 SHEET 1 D 6 LEU D 388 VAL D 391 0 SHEET 2 D 6 MET D 465 LEU D 468 1 O LEU D 467 N ALA D 389 SHEET 3 D 6 ALA D 494 ILE D 497 1 O MET D 495 N LEU D 466 SHEET 4 D 6 ILE D 351 ILE D 355 1 N VAL D 352 O VAL D 496 SHEET 5 D 6 HIS D 510 ASP D 516 1 O LEU D 512 N GLY D 353 SHEET 6 D 6 LYS D 519 GLU D 524 -1 O GLU D 521 N ASP D 513 SHEET 1 E 2 ILE D 414 ILE D 417 0 SHEET 2 E 2 THR D 420 PRO D 423 -1 O THR D 420 N ILE D 417 SHEET 1 F 5 GLN F 20 TYR F 21 0 SHEET 2 F 5 VAL F 222 VAL F 224 1 O ALA F 223 N TYR F 21 SHEET 3 F 5 LYS F 211 THR F 216 -1 N ILE F 214 O VAL F 222 SHEET 4 F 5 SER F 41 ASN F 47 -1 N ASP F 43 O SER F 215 SHEET 5 F 5 ILE F 170 LYS F 177 -1 O THR F 173 N VAL F 44 SHEET 1 G 2 GLY F 61 VAL F 64 0 SHEET 2 G 2 GLN F 160 TYR F 163 -1 O VAL F 161 N THR F 63 SHEET 1 H 3 VAL F 95 GLY F 96 0 SHEET 2 H 3 VAL F 75 PHE F 78 1 N VAL F 77 O GLY F 96 SHEET 3 H 3 VAL F 113 ALA F 116 1 O ILE F 115 N PHE F 78 SHEET 1 I 4 THR G 89 LEU G 90 0 SHEET 2 I 4 VAL G 30 ASN G 36 -1 N ILE G 33 O LEU G 90 SHEET 3 I 4 LEU G 151 THR G 157 -1 O THR G 156 N GLU G 31 SHEET 4 I 4 TYR G 127 VAL G 131 -1 N TYR G 127 O ILE G 155 SHEET 1 J 2 LEU G 65 LYS G 68 0 SHEET 2 J 2 PRO G 83 LYS G 87 -1 O LYS G 87 N LEU G 65 SHEET 1 K 2 LYS H 7 VAL H 11 0 SHEET 2 K 2 PHE H 19 THR H 23 -1 O THR H 22 N ILE H 8 SHEET 1 L 2 LEU H 35 ASP H 39 0 SHEET 2 L 2 GLN H 44 TYR H 48 -1 O TYR H 48 N LEU H 35 SHEET 1 M 2 GLU I 73 ARG I 78 0 SHEET 2 M 2 THR I 83 VAL I 88 -1 O VAL I 86 N LYS I 75 CISPEP 1 GLU D 209 GLY D 210 0 7.25 CISPEP 2 GLY D 242 ASN D 243 0 0.61 CISPEP 3 ALA F 36 LYS F 37 0 14.91 CISPEP 4 GLY F 132 PRO F 133 0 8.63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000