HEADER VIRUS/IMMUNE SYSTEM 26-MAR-14 3J6U TITLE CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 3 IN COMPLEX WITH HUMAN TITLE 2 ANTIBODY 5J7 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: UNP RESIDUES 281-773; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MEMBRANE PROTEIN; COMPND 8 CHAIN: B, D, F; COMPND 9 FRAGMENT: UNP RESIDUES 206-280; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAB 5J7 HEAVY CHAIN; COMPND 13 CHAIN: H; COMPND 14 FRAGMENT: VARIABLE REGION; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: FAB 5J7 LIGHT CHAIN; COMPND 18 CHAIN: L; COMPND 19 FRAGMENT: VARIABLE REGION; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 STRAIN: D3/SG/05K863DK1/2005; SOURCE 5 EXPRESSION_SYSTEM: AEDES ALBOPICTUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: ASIAN TIGER MOSQUITO; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7160; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: C6/36; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 11 ORGANISM_TAXID: 11069; SOURCE 12 STRAIN: D3/SG/05K863DK1/2005; SOURCE 13 EXPRESSION_SYSTEM: AEDES ALBOPICTUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: ASIAN TIGER MOSQUITO; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7160; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: C6/36; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 STRAIN: HMMA2.5 MYELOMA; SOURCE 22 CELL: HYBRIDOMA; SOURCE 23 MOL_ID: 4; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 STRAIN: HMMA2.5 MYELOMA; SOURCE 28 CELL: HYBRIDOMA KEYWDS DENGUE VIRUS, HUMAN ANTIBODY, NEUTRALIZATION, VIRUS-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, B, C, D, E, F, H, L AUTHOR G.FIBRIANSAH,J.L.TAN,S.A.SMITH,R.DE ALWIS,T.-S.NG,V.A.KOSTYUCHENKO, AUTHOR 2 P.KUKKARO,A.M.DE SILVA,J.E.CROWE JR.,S.-M.LOK REVDAT 3 21-FEB-24 3J6U 1 REMARK REVDAT 2 18-JUL-18 3J6U 1 REMARK REVDAT 1 04-MAR-15 3J6U 0 JRNL AUTH G.FIBRIANSAH,J.L.TAN,S.A.SMITH,R.DE ALWIS,T.S.NG, JRNL AUTH 2 V.A.KOSTYUCHENKO,R.S.JADI,P.KUKKARO,A.M.DE SILVA,J.E.CROWE, JRNL AUTH 3 S.M.LOK JRNL TITL A HIGHLY POTENT HUMAN ANTIBODY NEUTRALIZES DENGUE VIRUS JRNL TITL 2 SEROTYPE 3 BY BINDING ACROSS THREE SURFACE PROTEINS. JRNL REF NAT COMMUN V. 6 6341 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25698059 JRNL DOI 10.1038/NCOMMS7341 REMARK 2 REMARK 2 RESOLUTION. 9.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : COOT, MDFF, NAMD, UCSF CHIMERA, EMAN, REMARK 3 EMAN, MPSA REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3J6T REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : REAL SPACE CORRELATION REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE DETAILS- REMARK 3 -INITIALLY FITTED IN CHIMERA, MODEL REBUILT IN COOT, REFINED IN REMARK 3 NAMD/MDFF REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.370 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.000 REMARK 3 NUMBER OF PARTICLES : 970 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE DETAILS: PARTICLES WERE MANUALLY REMARK 3 SELECTED.) (SINGLE PARTICLE--APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3J6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000160324. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DENGUE VIRUS 3 COMPLEXED WITH REMARK 245 HUMAN ANTIBODY 5J7 FAB; DENGUE REMARK 245 VIRUS 3; FAB 5J7 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : ULTRA-THIN CARBON-COATED LACEY REMARK 245 CARBON GRID REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOTTED WITH FILTER PAPER FOR 2 REMARK 245 SECONDS PRIOR TO SNAP FREEZING REMARK 245 IN LIQUID ETHANE (FEI VITROBOT REMARK 245 MARK IV) REMARK 245 SAMPLE BUFFER : 10 MM TRIS-HCL, PH 8.0, 120 MM REMARK 245 NACL, 1 MM EDTA REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 23-MAR-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 100.00 REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON I (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1800.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.361803 0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 2 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 2 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 3 -0.670820 0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 3 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 3 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 4 -0.670820 0.162460 0.723607 0.00000 REMARK 350 BIOMT2 4 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 4 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 5 0.361803 -0.262866 0.894427 0.00000 REMARK 350 BIOMT2 5 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 5 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 6 -0.052787 0.688191 0.723607 0.00000 REMARK 350 BIOMT2 6 0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 6 0.723607 0.525731 -0.447213 0.00000 REMARK 350 BIOMT1 7 0.447214 0.525731 0.723607 0.00000 REMARK 350 BIOMT2 7 0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 7 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 8 0.670820 0.688191 0.276393 0.00000 REMARK 350 BIOMT2 8 -0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 8 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 9 0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 -0.138197 0.951057 0.276393 0.00000 REMARK 350 BIOMT2 10 -0.425326 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 10 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 11 -0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 11 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.138197 -0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 12 -0.425326 -0.309017 0.850651 0.00000 REMARK 350 BIOMT3 12 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 13 0.052787 -0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 13 0.688191 -0.500000 0.525731 0.00000 REMARK 350 BIOMT3 13 -0.723607 -0.525731 0.447213 0.00000 REMARK 350 BIOMT1 14 -0.447214 -0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 14 0.850651 0.000000 -0.525731 0.00000 REMARK 350 BIOMT3 14 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 15 -0.670820 -0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 15 -0.162460 0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 15 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 16 -0.638196 0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 16 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 16 -0.723607 -0.525731 0.447213 0.00000 REMARK 350 BIOMT1 17 -0.947214 -0.162460 0.276393 0.00000 REMARK 350 BIOMT2 17 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 17 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 18 -0.052787 -0.688191 0.723607 0.00000 REMARK 350 BIOMT2 18 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 18 0.723607 -0.525731 -0.447213 0.00000 REMARK 350 BIOMT1 19 0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 0.447214 0.000000 -0.894427 0.00000 REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 20 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 21 -0.447214 0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 21 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 21 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 22 -0.947214 0.162460 0.276393 0.00000 REMARK 350 BIOMT2 22 0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 22 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 23 -0.138197 -0.425325 0.894427 0.00000 REMARK 350 BIOMT2 23 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 23 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 24 0.861803 -0.425325 0.276393 0.00000 REMARK 350 BIOMT2 24 0.425326 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 24 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 25 0.670820 0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 25 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 25 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 26 -0.138197 -0.951057 0.276393 0.00000 REMARK 350 BIOMT2 26 0.425326 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 26 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 27 0.447214 -0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 27 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 27 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 28 0.138197 -0.425326 -0.894427 0.00000 REMARK 350 BIOMT2 28 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 28 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 29 -0.638196 -0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 29 -0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 29 -0.723607 0.525731 0.447213 0.00000 REMARK 350 BIOMT1 30 -0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 30 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 31 -0.361803 0.587785 0.723607 0.00000 REMARK 350 BIOMT2 31 0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 31 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 32 0.361803 0.262866 0.894427 0.00000 REMARK 350 BIOMT2 32 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 32 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 33 0.861803 0.425326 0.276393 0.00000 REMARK 350 BIOMT2 33 -0.425326 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 33 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 34 0.447214 0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 34 0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 34 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 35 -0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 35 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 36 0.947214 -0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 36 0.162460 -0.500000 0.850651 0.00000 REMARK 350 BIOMT3 36 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 37 0.138197 0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 37 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 37 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 38 -0.861803 0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 38 0.425326 0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 38 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 39 -0.670820 -0.162460 0.723607 0.00000 REMARK 350 BIOMT2 39 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 39 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 40 0.447214 -0.525731 0.723607 0.00000 REMARK 350 BIOMT2 40 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 40 -0.276393 -0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 41 -0.447214 -0.850651 0.276393 0.00000 REMARK 350 BIOMT2 41 0.525731 0.000000 0.850651 0.00000 REMARK 350 BIOMT3 41 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 42 0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 42 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 43 0.361803 -0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 43 0.262866 0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 43 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 44 -0.361803 -0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 44 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 44 0.723607 0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 45 -0.861803 -0.425326 -0.276393 0.00000 REMARK 350 BIOMT2 45 -0.425326 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 45 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 46 -0.361803 0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 46 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 46 0.723607 -0.525731 -0.447214 0.00000 REMARK 350 BIOMT1 47 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 47 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 48 -0.361803 -0.587785 0.723607 0.00000 REMARK 350 BIOMT2 48 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 48 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 49 0.670820 -0.688191 0.276393 0.00000 REMARK 350 BIOMT2 49 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 49 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 50 0.670820 -0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 50 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 50 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 51 0.947214 0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 51 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 51 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 52 0.052787 0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 52 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 52 -0.723607 0.525731 0.447213 0.00000 REMARK 350 BIOMT1 53 -0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 53 -0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 54 -0.447214 0.000000 0.894427 0.00000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 54 0.894427 0.000000 0.447214 0.00000 REMARK 350 BIOMT1 55 0.638196 -0.262866 0.723607 0.00000 REMARK 350 BIOMT2 55 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 55 0.723607 0.525731 -0.447213 0.00000 REMARK 350 BIOMT1 56 -0.138197 0.425326 0.894427 0.00000 REMARK 350 BIOMT2 56 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 56 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 57 0.638196 0.262866 0.723607 0.00000 REMARK 350 BIOMT2 57 -0.262866 -0.809017 0.525731 0.00000 REMARK 350 BIOMT3 57 0.723607 -0.525731 -0.447213 0.00000 REMARK 350 BIOMT1 58 0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 58 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 59 0.138197 0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 59 0.425326 -0.309017 -0.850651 0.00000 REMARK 350 BIOMT3 59 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 60 -0.447214 0.850651 0.276393 0.00000 REMARK 350 BIOMT2 60 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 60 -0.723607 -0.525731 0.447214 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 73 REMARK 465 MET B 74 REMARK 465 THR B 75 REMARK 465 SER D 73 REMARK 465 MET D 74 REMARK 465 THR D 75 REMARK 465 SER F 73 REMARK 465 MET F 74 REMARK 465 THR F 75 REMARK 465 TRP H 1 REMARK 465 VAL H 2 REMARK 465 PRO H 3 REMARK 465 GLY H 4 REMARK 465 SER H 5 REMARK 465 TRP H 6 REMARK 465 ALA H 7 REMARK 465 GLN H 8 REMARK 465 VAL H 9 REMARK 465 TRP L 1 REMARK 465 VAL L 2 REMARK 465 PRO L 3 REMARK 465 GLY L 4 REMARK 465 VAL L 5 REMARK 465 HIS L 6 REMARK 465 SER L 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5933 RELATED DB: EMDB REMARK 900 CRYO-EM RECONSTRUCTION OF DENGUE VIRUS 3 AT 28 DEGREES C REMARK 900 RELATED ID: EMD-5934 RELATED DB: EMDB REMARK 900 CRYO-EM RECONSTRUCTION OF DENGUE VIRUS 3 AT 37 DEGREES C REMARK 900 RELATED ID: EMD-5935 RELATED DB: EMDB REMARK 900 CRYO-EM RECONSTRUCTION OF DENGUE VIRUS 3 IN COMPLEX WITH HUMAN REMARK 900 ANTIBODY 5J7 FAB REMARK 900 RELATED ID: 3J6S RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS 3 AT 28 DEGREES C REMARK 900 RELATED ID: 3J6T RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS 3 AT 37 DEGREES C DBREF 3J6U A 1 493 UNP Q6DLV0 Q6DLV0_9FLAV 281 773 DBREF 3J6U B 1 75 UNP Q6DLV0 Q6DLV0_9FLAV 206 280 DBREF 3J6U C 1 493 UNP Q6DLV0 Q6DLV0_9FLAV 281 773 DBREF 3J6U D 1 75 UNP Q6DLV0 Q6DLV0_9FLAV 206 280 DBREF 3J6U E 1 493 UNP Q6DLV0 Q6DLV0_9FLAV 281 773 DBREF 3J6U F 1 75 UNP Q6DLV0 Q6DLV0_9FLAV 206 280 DBREF 3J6U H 1 135 PDB 3J6U 3J6U 1 135 DBREF 3J6U L 1 118 PDB 3J6U 3J6U 1 118 SEQRES 1 A 493 MET ARG CYS VAL GLY VAL GLY ASN ARG ASP PHE VAL GLU SEQRES 2 A 493 GLY LEU SER GLY ALA THR TRP VAL ASP VAL VAL LEU GLU SEQRES 3 A 493 HIS GLY GLY CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 A 493 THR LEU ASP ILE GLU LEU GLN LYS THR GLU ALA THR GLN SEQRES 5 A 493 LEU ALA THR LEU ARG LYS LEU CYS ILE GLU GLY LYS ILE SEQRES 6 A 493 THR ASN ILE THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 A 493 GLU ALA VAL LEU PRO GLU GLU GLN ASP GLN ASN TYR VAL SEQRES 8 A 493 CYS LYS HIS THR TYR VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 493 CYS GLY LEU PHE GLY LYS GLY SER LEU VAL THR CYS ALA SEQRES 10 A 493 LYS PHE GLN CYS LEU GLU PRO ILE GLU GLY LYS VAL VAL SEQRES 11 A 493 GLN TYR GLU ASN LEU LYS TYR THR VAL ILE ILE THR VAL SEQRES 12 A 493 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR GLN SEQRES 13 A 493 GLY VAL THR ALA GLU ILE THR PRO GLN ALA SER THR THR SEQRES 14 A 493 GLU ALA ILE LEU PRO GLU TYR GLY THR LEU GLY LEU GLU SEQRES 15 A 493 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET ILE SEQRES 16 A 493 LEU LEU THR MET LYS ASN LYS ALA TRP MET VAL HIS ARG SEQRES 17 A 493 GLN TRP PHE PHE ASP LEU PRO LEU PRO TRP ALA SER GLY SEQRES 18 A 493 ALA THR THR GLU THR PRO THR TRP ASN ARG LYS GLU LEU SEQRES 19 A 493 LEU VAL THR PHE LYS ASN ALA HIS ALA LYS LYS GLN GLU SEQRES 20 A 493 VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET HIS THR SEQRES 21 A 493 ALA LEU THR GLY ALA THR GLU ILE GLN ASN SER GLY GLY SEQRES 22 A 493 THR SER ILE PHE ALA GLY HIS LEU LYS CYS ARG LEU LYS SEQRES 23 A 493 MET ASP LYS LEU GLU LEU LYS GLY MET SER TYR ALA MET SEQRES 24 A 493 CYS THR ASN THR PHE VAL LEU LYS LYS GLU VAL SER GLU SEQRES 25 A 493 THR GLN HIS GLY THR ILE LEU ILE LYS VAL GLU TYR LYS SEQRES 26 A 493 GLY GLU ASP ALA PRO CYS LYS ILE PRO PHE SER THR GLU SEQRES 27 A 493 ASP GLY GLN GLY LYS ALA HIS ASN GLY ARG LEU ILE THR SEQRES 28 A 493 ALA ASN PRO VAL VAL THR LYS LYS GLU GLU PRO VAL ASN SEQRES 29 A 493 ILE GLU ALA GLU PRO PRO PHE GLY GLU SER ASN ILE VAL SEQRES 30 A 493 ILE GLY ILE GLY ASP ASN ALA LEU LYS ILE ASN TRP TYR SEQRES 31 A 493 LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU ALA THR SEQRES 32 A 493 ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY ASP THR SEQRES 33 A 493 ALA TRP ASP PHE GLY SER VAL GLY GLY VAL LEU ASN SER SEQRES 34 A 493 LEU GLY LYS MET VAL HIS GLN ILE PHE GLY SER ALA TYR SEQRES 35 A 493 THR ALA LEU PHE SER GLY VAL SER TRP VAL MET LYS ILE SEQRES 36 A 493 GLY ILE GLY VAL LEU LEU THR TRP ILE GLY LEU ASN SER SEQRES 37 A 493 LYS ASN THR SER MET SER PHE SER CYS ILE ALA ILE GLY SEQRES 38 A 493 ILE ILE THR LEU TYR LEU GLY ALA VAL VAL GLN ALA SEQRES 1 B 75 SER VAL ALA LEU ALA PRO HIS VAL GLY MET GLY LEU ASP SEQRES 2 B 75 THR ARG THR GLN THR TRP MET SER ALA GLU GLY ALA TRP SEQRES 3 B 75 ARG GLN VAL GLU LYS VAL GLU THR TRP ALA LEU ARG HIS SEQRES 4 B 75 PRO GLY PHE THR ILE LEU ALA LEU PHE LEU ALA HIS TYR SEQRES 5 B 75 ILE GLY THR SER LEU THR GLN LYS VAL VAL ILE PHE ILE SEQRES 6 B 75 LEU LEU MET LEU VAL THR PRO SER MET THR SEQRES 1 C 493 MET ARG CYS VAL GLY VAL GLY ASN ARG ASP PHE VAL GLU SEQRES 2 C 493 GLY LEU SER GLY ALA THR TRP VAL ASP VAL VAL LEU GLU SEQRES 3 C 493 HIS GLY GLY CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 C 493 THR LEU ASP ILE GLU LEU GLN LYS THR GLU ALA THR GLN SEQRES 5 C 493 LEU ALA THR LEU ARG LYS LEU CYS ILE GLU GLY LYS ILE SEQRES 6 C 493 THR ASN ILE THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 C 493 GLU ALA VAL LEU PRO GLU GLU GLN ASP GLN ASN TYR VAL SEQRES 8 C 493 CYS LYS HIS THR TYR VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 C 493 CYS GLY LEU PHE GLY LYS GLY SER LEU VAL THR CYS ALA SEQRES 10 C 493 LYS PHE GLN CYS LEU GLU PRO ILE GLU GLY LYS VAL VAL SEQRES 11 C 493 GLN TYR GLU ASN LEU LYS TYR THR VAL ILE ILE THR VAL SEQRES 12 C 493 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR GLN SEQRES 13 C 493 GLY VAL THR ALA GLU ILE THR PRO GLN ALA SER THR THR SEQRES 14 C 493 GLU ALA ILE LEU PRO GLU TYR GLY THR LEU GLY LEU GLU SEQRES 15 C 493 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET ILE SEQRES 16 C 493 LEU LEU THR MET LYS ASN LYS ALA TRP MET VAL HIS ARG SEQRES 17 C 493 GLN TRP PHE PHE ASP LEU PRO LEU PRO TRP ALA SER GLY SEQRES 18 C 493 ALA THR THR GLU THR PRO THR TRP ASN ARG LYS GLU LEU SEQRES 19 C 493 LEU VAL THR PHE LYS ASN ALA HIS ALA LYS LYS GLN GLU SEQRES 20 C 493 VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET HIS THR SEQRES 21 C 493 ALA LEU THR GLY ALA THR GLU ILE GLN ASN SER GLY GLY SEQRES 22 C 493 THR SER ILE PHE ALA GLY HIS LEU LYS CYS ARG LEU LYS SEQRES 23 C 493 MET ASP LYS LEU GLU LEU LYS GLY MET SER TYR ALA MET SEQRES 24 C 493 CYS THR ASN THR PHE VAL LEU LYS LYS GLU VAL SER GLU SEQRES 25 C 493 THR GLN HIS GLY THR ILE LEU ILE LYS VAL GLU TYR LYS SEQRES 26 C 493 GLY GLU ASP ALA PRO CYS LYS ILE PRO PHE SER THR GLU SEQRES 27 C 493 ASP GLY GLN GLY LYS ALA HIS ASN GLY ARG LEU ILE THR SEQRES 28 C 493 ALA ASN PRO VAL VAL THR LYS LYS GLU GLU PRO VAL ASN SEQRES 29 C 493 ILE GLU ALA GLU PRO PRO PHE GLY GLU SER ASN ILE VAL SEQRES 30 C 493 ILE GLY ILE GLY ASP ASN ALA LEU LYS ILE ASN TRP TYR SEQRES 31 C 493 LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU ALA THR SEQRES 32 C 493 ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY ASP THR SEQRES 33 C 493 ALA TRP ASP PHE GLY SER VAL GLY GLY VAL LEU ASN SER SEQRES 34 C 493 LEU GLY LYS MET VAL HIS GLN ILE PHE GLY SER ALA TYR SEQRES 35 C 493 THR ALA LEU PHE SER GLY VAL SER TRP VAL MET LYS ILE SEQRES 36 C 493 GLY ILE GLY VAL LEU LEU THR TRP ILE GLY LEU ASN SER SEQRES 37 C 493 LYS ASN THR SER MET SER PHE SER CYS ILE ALA ILE GLY SEQRES 38 C 493 ILE ILE THR LEU TYR LEU GLY ALA VAL VAL GLN ALA SEQRES 1 D 75 SER VAL ALA LEU ALA PRO HIS VAL GLY MET GLY LEU ASP SEQRES 2 D 75 THR ARG THR GLN THR TRP MET SER ALA GLU GLY ALA TRP SEQRES 3 D 75 ARG GLN VAL GLU LYS VAL GLU THR TRP ALA LEU ARG HIS SEQRES 4 D 75 PRO GLY PHE THR ILE LEU ALA LEU PHE LEU ALA HIS TYR SEQRES 5 D 75 ILE GLY THR SER LEU THR GLN LYS VAL VAL ILE PHE ILE SEQRES 6 D 75 LEU LEU MET LEU VAL THR PRO SER MET THR SEQRES 1 E 493 MET ARG CYS VAL GLY VAL GLY ASN ARG ASP PHE VAL GLU SEQRES 2 E 493 GLY LEU SER GLY ALA THR TRP VAL ASP VAL VAL LEU GLU SEQRES 3 E 493 HIS GLY GLY CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 E 493 THR LEU ASP ILE GLU LEU GLN LYS THR GLU ALA THR GLN SEQRES 5 E 493 LEU ALA THR LEU ARG LYS LEU CYS ILE GLU GLY LYS ILE SEQRES 6 E 493 THR ASN ILE THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 E 493 GLU ALA VAL LEU PRO GLU GLU GLN ASP GLN ASN TYR VAL SEQRES 8 E 493 CYS LYS HIS THR TYR VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 E 493 CYS GLY LEU PHE GLY LYS GLY SER LEU VAL THR CYS ALA SEQRES 10 E 493 LYS PHE GLN CYS LEU GLU PRO ILE GLU GLY LYS VAL VAL SEQRES 11 E 493 GLN TYR GLU ASN LEU LYS TYR THR VAL ILE ILE THR VAL SEQRES 12 E 493 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR GLN SEQRES 13 E 493 GLY VAL THR ALA GLU ILE THR PRO GLN ALA SER THR THR SEQRES 14 E 493 GLU ALA ILE LEU PRO GLU TYR GLY THR LEU GLY LEU GLU SEQRES 15 E 493 CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU MET ILE SEQRES 16 E 493 LEU LEU THR MET LYS ASN LYS ALA TRP MET VAL HIS ARG SEQRES 17 E 493 GLN TRP PHE PHE ASP LEU PRO LEU PRO TRP ALA SER GLY SEQRES 18 E 493 ALA THR THR GLU THR PRO THR TRP ASN ARG LYS GLU LEU SEQRES 19 E 493 LEU VAL THR PHE LYS ASN ALA HIS ALA LYS LYS GLN GLU SEQRES 20 E 493 VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET HIS THR SEQRES 21 E 493 ALA LEU THR GLY ALA THR GLU ILE GLN ASN SER GLY GLY SEQRES 22 E 493 THR SER ILE PHE ALA GLY HIS LEU LYS CYS ARG LEU LYS SEQRES 23 E 493 MET ASP LYS LEU GLU LEU LYS GLY MET SER TYR ALA MET SEQRES 24 E 493 CYS THR ASN THR PHE VAL LEU LYS LYS GLU VAL SER GLU SEQRES 25 E 493 THR GLN HIS GLY THR ILE LEU ILE LYS VAL GLU TYR LYS SEQRES 26 E 493 GLY GLU ASP ALA PRO CYS LYS ILE PRO PHE SER THR GLU SEQRES 27 E 493 ASP GLY GLN GLY LYS ALA HIS ASN GLY ARG LEU ILE THR SEQRES 28 E 493 ALA ASN PRO VAL VAL THR LYS LYS GLU GLU PRO VAL ASN SEQRES 29 E 493 ILE GLU ALA GLU PRO PRO PHE GLY GLU SER ASN ILE VAL SEQRES 30 E 493 ILE GLY ILE GLY ASP ASN ALA LEU LYS ILE ASN TRP TYR SEQRES 31 E 493 LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU ALA THR SEQRES 32 E 493 ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY ASP THR SEQRES 33 E 493 ALA TRP ASP PHE GLY SER VAL GLY GLY VAL LEU ASN SER SEQRES 34 E 493 LEU GLY LYS MET VAL HIS GLN ILE PHE GLY SER ALA TYR SEQRES 35 E 493 THR ALA LEU PHE SER GLY VAL SER TRP VAL MET LYS ILE SEQRES 36 E 493 GLY ILE GLY VAL LEU LEU THR TRP ILE GLY LEU ASN SER SEQRES 37 E 493 LYS ASN THR SER MET SER PHE SER CYS ILE ALA ILE GLY SEQRES 38 E 493 ILE ILE THR LEU TYR LEU GLY ALA VAL VAL GLN ALA SEQRES 1 F 75 SER VAL ALA LEU ALA PRO HIS VAL GLY MET GLY LEU ASP SEQRES 2 F 75 THR ARG THR GLN THR TRP MET SER ALA GLU GLY ALA TRP SEQRES 3 F 75 ARG GLN VAL GLU LYS VAL GLU THR TRP ALA LEU ARG HIS SEQRES 4 F 75 PRO GLY PHE THR ILE LEU ALA LEU PHE LEU ALA HIS TYR SEQRES 5 F 75 ILE GLY THR SER LEU THR GLN LYS VAL VAL ILE PHE ILE SEQRES 6 F 75 LEU LEU MET LEU VAL THR PRO SER MET THR SEQRES 1 H 135 TRP VAL PRO GLY SER TRP ALA GLN VAL GLN LEU VAL GLN SEQRES 2 H 135 SER GLY ALA GLU LEU ARG LYS PRO GLY SER SER VAL LYS SEQRES 3 H 135 VAL SER CYS ARG ALA SER GLY GLY THR PHE SER SER TYR SEQRES 4 H 135 THR PHE ASN TRP VAL ARG GLN ALA PRO GLY GLN GLY LEU SEQRES 5 H 135 GLU TRP MET GLY GLY PHE ILE PRO VAL PHE ASN THR THR SEQRES 6 H 135 ASN TYR ALA GLN THR PHE GLN GLY ARG VAL THR ILE ALA SEQRES 7 H 135 ALA ASP LYS SER THR SER THR ALA TYR MET GLU LEU ARG SEQRES 8 H 135 SER LEU ARG SER GLU ASP THR ALA ILE TYR TYR CYS ALA SEQRES 9 H 135 ARG ASP LYS GLU LEU LEU PHE SER ARG ALA PHE ASP ILE SEQRES 10 H 135 TRP GLY GLN GLY THR MET VAL THR VAL SER SER ALA GLY SEQRES 11 H 135 THR LYS GLY PRO SER SEQRES 1 L 118 TRP VAL PRO GLY VAL HIS SER ASP ILE GLN MET THR GLN SEQRES 2 L 118 SER PRO SER SER LEU SER ALA SER VAL GLY ASP ARG VAL SEQRES 3 L 118 THR ILE THR CYS ARG ALA SER GLN SER ILE SER ARG TYR SEQRES 4 L 118 LEU ASN TRP TYR GLN ARG GLU PRO GLY LYS ALA PRO LYS SEQRES 5 L 118 LEU LEU ILE TYR GLY ALA SER SER LEU GLN ARG GLY VAL SEQRES 6 L 118 PRO SER ARG PHE SER GLY SER GLY SER GLY THR ASP PHE SEQRES 7 L 118 THR LEU THR ILE SER SER LEU GLN PRO GLU ASP PHE ALA SEQRES 8 L 118 THR TYR TYR CYS GLN GLN SER GLN TYR ILE PRO TYR THR SEQRES 9 L 118 PHE GLY GLN GLY THR LYS VAL ASP ILE LYS ARG THR VAL SEQRES 10 L 118 ALA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000