HEADER VIRUS 18-JUL-14 3J7N TITLE VIRUS MODEL OF BROME MOSAIC VIRUS (SECOND HALF DATA SET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CP, COAT PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BROME MOSAIC VIRUS; SOURCE 3 ORGANISM_COMMON: BMV; SOURCE 4 ORGANISM_TAXID: 12302 KEYWDS CAPSID PROTEIN, BMV, BETA BARREL, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.WANG,C.HRYC,B.BAMMES,P.V.AFONINE,J.JAKANA,D.H.CHEN,X.LIU,M.L.BAKER, AUTHOR 2 C.KAO,S.J.LUDTKE,M.F.SCHMID,P.D.ADAMS,W.CHIU REVDAT 5 21-FEB-24 3J7N 1 REMARK REVDAT 4 18-JUL-18 3J7N 1 REMARK REVDAT 3 18-MAY-16 3J7N 1 REMARK REVDAT 2 17-SEP-14 3J7N 1 JRNL REVDAT 1 10-SEP-14 3J7N 0 JRNL AUTH Z.WANG,C.F.HRYC,B.BAMMES,P.V.AFONINE,J.JAKANA,D.H.CHEN, JRNL AUTH 2 X.LIU,M.L.BAKER,C.KAO,S.J.LUDTKE,M.F.SCHMID,P.D.ADAMS,W.CHIU JRNL TITL AN ATOMIC MODEL OF BROME MOSAIC VIRUS USING DIRECT ELECTRON JRNL TITL 2 DETECTION AND REAL-SPACE OPTIMIZATION. JRNL REF NAT COMMUN V. 5 4808 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25185801 JRNL DOI 10.1038/NCOMMS5808 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, MPSA REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 0.930 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 30000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE--APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3J7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000160353. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BROME MOSAIC VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : PLUNGED INTO LIQUID ETHANE (FEI REMARK 245 VITROBOT MARK IV). REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 10-JAN-13 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL 3200FSC REMARK 245 DETECTOR TYPE : DIRECT ELECTRON DE-12 (4K X REMARK 245 3K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951056 -0.000132 341.40736 REMARK 350 BIOMT2 2 0.951056 0.309017 0.000181 -54.10694 REMARK 350 BIOMT3 2 -0.000132 -0.000181 1.000000 0.06501 REMARK 350 BIOMT1 3 -0.809017 -0.587785 -0.000344 498.36679 REMARK 350 BIOMT2 3 0.587785 -0.809017 0.000112 253.87080 REMARK 350 BIOMT3 3 -0.000344 -0.000112 1.000000 0.09489 REMARK 350 BIOMT1 4 -0.809017 0.587785 -0.000344 253.96569 REMARK 350 BIOMT2 4 -0.587785 -0.809017 -0.000112 498.31845 REMARK 350 BIOMT3 4 -0.000344 0.000112 1.000000 0.04836 REMARK 350 BIOMT1 5 0.309017 0.951056 -0.000132 -54.04193 REMARK 350 BIOMT2 5 -0.951056 0.309017 -0.000181 341.41766 REMARK 350 BIOMT3 5 -0.000132 0.000181 1.000000 -0.01029 REMARK 350 BIOMT1 6 -0.947319 -0.162298 0.276128 381.18237 REMARK 350 BIOMT2 6 -0.162298 -0.500000 -0.850682 522.44845 REMARK 350 BIOMT3 6 0.276128 -0.850682 0.447319 234.35221 REMARK 350 BIOMT1 7 -0.447128 0.850751 0.276223 66.56015 REMARK 350 BIOMT2 7 -0.525569 0.000000 -0.850751 494.03693 REMARK 350 BIOMT3 7 -0.723777 -0.525569 0.447128 374.68108 REMARK 350 BIOMT1 8 0.670906 0.688091 0.276436 -132.10635 REMARK 350 BIOMT2 8 -0.162298 0.500000 -0.850682 314.54846 REMARK 350 BIOMT3 8 -0.723564 0.525862 0.447128 156.04426 REMARK 350 BIOMT1 9 0.861698 -0.425487 0.276472 59.73323 REMARK 350 BIOMT2 9 0.425487 0.309017 -0.850570 232.03000 REMARK 350 BIOMT3 9 0.276472 0.850570 0.447319 -119.40961 REMARK 350 BIOMT1 10 -0.138420 -0.951056 0.276282 376.96310 REMARK 350 BIOMT2 10 0.425487 -0.309017 -0.850570 360.51927 REMARK 350 BIOMT3 10 0.894316 -0.000181 0.447437 -71.01263 REMARK 350 BIOMT1 11 -0.861698 -0.425487 -0.276472 532.98442 REMARK 350 BIOMT2 11 -0.425487 0.309017 0.850570 55.28073 REMARK 350 BIOMT3 11 -0.276472 0.850570 -0.447319 181.54269 REMARK 350 BIOMT1 12 -0.670906 0.688091 -0.276436 261.79818 REMARK 350 BIOMT2 12 0.162298 0.500000 0.850682 -106.64846 REMARK 350 BIOMT3 12 0.723564 0.525862 -0.447128 41.10227 REMARK 350 BIOMT1 13 0.447128 0.850751 -0.276223 -4.50236 REMARK 350 BIOMT2 13 0.525569 0.000000 0.850751 -78.23694 REMARK 350 BIOMT3 13 0.723777 -0.525569 -0.447128 259.65056 REMARK 350 BIOMT1 14 0.947319 -0.162298 -0.276128 102.10109 REMARK 350 BIOMT2 14 0.162298 -0.500000 0.850682 101.25154 REMARK 350 BIOMT3 14 -0.276128 -0.850682 -0.447319 535.16125 REMARK 350 BIOMT1 15 0.138420 -0.951056 -0.276282 434.28619 REMARK 350 BIOMT2 15 -0.425487 -0.309017 0.850570 183.76999 REMARK 350 BIOMT3 15 -0.894316 -0.000181 -0.447437 486.88793 REMARK 350 BIOMT1 16 0.809017 0.587785 0.000344 -82.56678 REMARK 350 BIOMT2 16 0.587785 -0.809017 0.000112 253.87081 REMARK 350 BIOMT3 16 0.000344 0.000112 -1.000000 415.70510 REMARK 350 BIOMT1 17 0.809017 -0.587785 0.000344 161.83432 REMARK 350 BIOMT2 17 -0.587785 -0.809017 -0.000112 498.31845 REMARK 350 BIOMT3 17 0.000344 -0.000112 -1.000000 415.75164 REMARK 350 BIOMT1 18 -0.309017 -0.951056 0.000132 469.84193 REMARK 350 BIOMT2 18 -0.951056 0.309017 -0.000181 341.41766 REMARK 350 BIOMT3 18 0.000132 -0.000181 -1.000000 415.81029 REMARK 350 BIOMT1 19 -1.000000 0.000000 0.000000 415.80001 REMARK 350 BIOMT2 19 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 415.80000 REMARK 350 BIOMT1 20 -0.309017 0.951056 0.000132 74.39265 REMARK 350 BIOMT2 20 0.951057 0.309017 0.000181 -54.10693 REMARK 350 BIOMT3 20 0.000132 0.000181 -1.000000 415.73499 REMARK 350 BIOMT1 21 -0.138420 -0.425487 0.894316 139.20801 REMARK 350 BIOMT2 21 0.951056 -0.309017 0.000181 74.38233 REMARK 350 BIOMT3 21 0.276282 0.850570 0.447437 -119.39448 REMARK 350 BIOMT1 22 -0.447554 0.000000 0.894257 115.03053 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 415.80000 REMARK 350 BIOMT3 22 0.894257 0.000000 0.447554 -71.06251 REMARK 350 BIOMT1 23 -0.138420 0.425487 0.894316 -37.70963 REMARK 350 BIOMT2 23 -0.951056 -0.309017 -0.000181 469.90693 REMARK 350 BIOMT3 23 0.276282 -0.850570 0.447437 234.27245 REMARK 350 BIOMT1 24 0.361771 0.262966 0.894411 -107.93075 REMARK 350 BIOMT2 24 -0.587785 0.809017 -0.000112 161.92919 REMARK 350 BIOMT3 24 -0.723623 -0.525681 0.447246 374.64786 REMARK 350 BIOMT1 25 0.361771 -0.262966 0.894411 1.41037 REMARK 350 BIOMT2 25 0.587785 0.809017 0.000112 -82.51846 REMARK 350 BIOMT3 25 -0.723623 0.525681 0.447246 156.06968 REMARK 350 BIOMT1 26 0.447128 -0.525569 0.723777 73.73457 REMARK 350 BIOMT2 26 -0.850751 0.000000 0.525569 275.50529 REMARK 350 BIOMT3 26 -0.276223 -0.850751 -0.447128 535.15585 REMARK 350 BIOMT1 27 -0.361771 -0.587785 0.723623 254.87148 REMARK 350 BIOMT2 27 -0.262966 0.809017 0.525681 -14.91316 REMARK 350 BIOMT3 27 -0.894411 -0.000112 -0.447246 486.85377 REMARK 350 BIOMT1 28 -0.670906 0.162298 0.723564 163.21054 REMARK 350 BIOMT2 28 0.688091 0.500000 0.525862 -148.43083 REMARK 350 BIOMT3 28 -0.276436 0.850682 -0.447128 181.47228 REMARK 350 BIOMT1 29 -0.053062 0.688091 0.723682 -74.57595 REMARK 350 BIOMT2 29 0.688091 -0.500000 0.525862 59.46917 REMARK 350 BIOMT3 29 0.723682 0.525862 -0.446938 41.03822 REMARK 350 BIOMT1 30 0.637921 0.262966 0.723813 -129.87514 REMARK 350 BIOMT2 30 -0.262966 -0.809017 0.525681 321.47610 REMARK 350 BIOMT3 30 0.723813 -0.525681 -0.446938 259.62668 REMARK 350 BIOMT1 31 0.053062 0.688091 -0.723682 204.26779 REMARK 350 BIOMT2 31 -0.688091 -0.500000 -0.525862 564.23082 REMARK 350 BIOMT3 31 -0.723682 0.525862 0.446938 156.10831 REMARK 350 BIOMT1 32 0.670906 0.162298 -0.723564 185.10601 REMARK 350 BIOMT2 32 -0.688091 0.500000 -0.525862 356.33083 REMARK 350 BIOMT3 32 0.276436 0.850682 0.447128 -119.38574 REMARK 350 BIOMT1 33 0.361771 -0.587785 -0.723623 405.32962 REMARK 350 BIOMT2 33 0.262966 0.809017 -0.525681 94.32389 REMARK 350 BIOMT3 33 0.894411 -0.000112 0.447246 -71.00723 REMARK 350 BIOMT1 34 -0.447128 -0.525569 -0.723777 560.59708 REMARK 350 BIOMT2 34 0.850751 0.000000 -0.525569 140.29470 REMARK 350 BIOMT3 34 0.276223 -0.850751 0.447128 234.38637 REMARK 350 BIOMT1 35 -0.637921 0.262966 -0.723813 436.33403 REMARK 350 BIOMT2 35 0.262966 -0.809017 -0.525681 430.71316 REMARK 350 BIOMT3 35 -0.723813 -0.525681 0.446938 374.75149 REMARK 350 BIOMT1 36 -0.361771 0.262966 -0.894411 414.38964 REMARK 350 BIOMT2 36 0.587785 0.809017 0.000112 -82.51846 REMARK 350 BIOMT3 36 0.723623 -0.525681 -0.447246 259.73032 REMARK 350 BIOMT1 37 0.138420 0.425487 -0.894316 276.59199 REMARK 350 BIOMT2 37 0.951056 -0.309017 0.000181 74.38233 REMARK 350 BIOMT3 37 -0.276282 -0.850570 -0.447437 535.19447 REMARK 350 BIOMT1 38 0.447554 0.000000 -0.894257 300.76948 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000000 415.80000 REMARK 350 BIOMT3 38 -0.894257 0.000000 -0.447554 486.86251 REMARK 350 BIOMT1 39 0.138420 -0.425487 -0.894316 453.50964 REMARK 350 BIOMT2 39 -0.951057 -0.309017 -0.000181 469.90693 REMARK 350 BIOMT3 39 -0.276282 0.850570 -0.447437 181.52755 REMARK 350 BIOMT1 40 -0.361771 -0.262966 -0.894411 523.73076 REMARK 350 BIOMT2 40 -0.587785 0.809017 -0.000112 161.92919 REMARK 350 BIOMT3 40 0.723623 0.525681 -0.447246 41.15214 REMARK 350 BIOMT1 41 -0.138420 0.951056 0.276282 -18.48619 REMARK 350 BIOMT2 41 -0.425487 -0.309017 0.850570 183.76999 REMARK 350 BIOMT3 41 0.894316 0.000181 0.447437 -71.08793 REMARK 350 BIOMT1 42 0.861698 0.425487 0.276472 -117.18442 REMARK 350 BIOMT2 42 -0.425487 0.309017 0.850570 55.28073 REMARK 350 BIOMT3 42 0.276472 -0.850570 0.447319 234.25731 REMARK 350 BIOMT1 43 0.670906 -0.688091 0.276436 154.00182 REMARK 350 BIOMT2 43 0.162298 0.500000 0.850682 -106.64846 REMARK 350 BIOMT3 43 -0.723564 -0.525862 0.447128 374.69773 REMARK 350 BIOMT1 44 -0.447128 -0.850751 0.276223 420.30237 REMARK 350 BIOMT2 44 0.525569 0.000000 0.850751 -78.23694 REMARK 350 BIOMT3 44 -0.723777 0.525569 0.447128 156.14944 REMARK 350 BIOMT1 45 -0.947319 0.162298 0.276128 313.69892 REMARK 350 BIOMT2 45 0.162298 -0.500000 0.850682 101.25154 REMARK 350 BIOMT3 45 0.276128 0.850682 0.447319 -119.36125 REMARK 350 BIOMT1 46 0.053062 -0.688091 -0.723682 490.37596 REMARK 350 BIOMT2 46 0.688091 -0.500000 0.525862 59.46917 REMARK 350 BIOMT3 46 -0.723682 -0.525862 0.446938 374.76178 REMARK 350 BIOMT1 47 -0.637921 -0.262966 -0.723813 545.67515 REMARK 350 BIOMT2 47 -0.262966 -0.809017 0.525681 321.47610 REMARK 350 BIOMT3 47 -0.723813 0.525681 0.446938 156.17331 REMARK 350 BIOMT1 48 -0.447128 0.525569 -0.723777 342.06544 REMARK 350 BIOMT2 48 -0.850751 0.000000 0.525569 275.50529 REMARK 350 BIOMT3 48 0.276223 0.850751 0.447128 -119.35585 REMARK 350 BIOMT1 49 0.361771 0.587785 -0.723623 160.92852 REMARK 350 BIOMT2 49 -0.262966 0.809017 0.525681 -14.91316 REMARK 350 BIOMT3 49 0.894411 0.000112 0.447246 -71.05377 REMARK 350 BIOMT1 50 0.670906 -0.162298 -0.723564 252.58946 REMARK 350 BIOMT2 50 0.688091 0.500000 0.525862 -148.43083 REMARK 350 BIOMT3 50 0.276436 -0.850682 0.447128 234.32772 REMARK 350 BIOMT1 51 -0.361771 0.587785 0.723623 10.47038 REMARK 350 BIOMT2 51 0.262966 0.809017 -0.525681 94.32390 REMARK 350 BIOMT3 51 -0.894411 0.000112 -0.447246 486.80723 REMARK 350 BIOMT1 52 0.447128 0.525569 0.723777 -144.79707 REMARK 350 BIOMT2 52 0.850751 0.000000 -0.525569 140.29471 REMARK 350 BIOMT3 52 -0.276223 0.850751 -0.447128 181.41363 REMARK 350 BIOMT1 53 0.637921 -0.262966 0.723813 -20.53402 REMARK 350 BIOMT2 53 0.262966 -0.809017 -0.525681 430.71316 REMARK 350 BIOMT3 53 0.723813 0.525681 -0.446938 41.04851 REMARK 350 BIOMT1 54 -0.053062 -0.688091 0.723682 211.53222 REMARK 350 BIOMT2 54 -0.688091 -0.500000 -0.525862 564.23082 REMARK 350 BIOMT3 54 0.723682 -0.525862 -0.446938 259.69169 REMARK 350 BIOMT1 55 -0.670906 -0.162298 0.723564 230.69400 REMARK 350 BIOMT2 55 -0.688091 0.500000 -0.525862 356.33083 REMARK 350 BIOMT3 55 -0.276436 -0.850682 -0.447128 535.18573 REMARK 350 BIOMT1 56 0.447128 -0.850751 -0.276223 349.23986 REMARK 350 BIOMT2 56 -0.525569 0.000000 -0.850751 494.03693 REMARK 350 BIOMT3 56 0.723777 0.525569 -0.447128 41.11892 REMARK 350 BIOMT1 57 -0.670906 -0.688091 -0.276436 547.90635 REMARK 350 BIOMT2 57 -0.162298 0.500000 -0.850682 314.54846 REMARK 350 BIOMT3 57 0.723564 -0.525862 -0.447128 259.75574 REMARK 350 BIOMT1 58 -0.861698 0.425487 -0.276472 356.06678 REMARK 350 BIOMT2 58 0.425487 0.309017 -0.850570 232.03000 REMARK 350 BIOMT3 58 -0.276472 -0.850570 -0.447319 535.20961 REMARK 350 BIOMT1 59 0.138420 0.951056 -0.276282 38.83691 REMARK 350 BIOMT2 59 0.425487 -0.309017 -0.850570 360.51927 REMARK 350 BIOMT3 59 -0.894316 0.000181 -0.447437 486.81263 REMARK 350 BIOMT1 60 0.947319 0.162298 -0.276128 34.61764 REMARK 350 BIOMT2 60 -0.162298 -0.500000 -0.850682 522.44846 REMARK 350 BIOMT3 60 -0.276128 0.850682 -0.447319 181.44779 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 MET A 9 REMARK 465 THR A 10 REMARK 465 ARG A 11 REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 ARG A 20 REMARK 465 ASN A 21 REMARK 465 ARG A 22 REMARK 465 TRP A 23 REMARK 465 THR A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 VAL A 27 REMARK 465 GLN A 28 REMARK 465 PRO A 29 REMARK 465 VAL A 30 REMARK 465 ILE A 31 REMARK 465 VAL A 32 REMARK 465 GLU A 33 REMARK 465 PRO A 34 REMARK 465 LEU A 35 REMARK 465 ALA A 36 REMARK 465 ALA A 37 REMARK 465 GLY A 38 REMARK 465 GLN A 39 REMARK 465 GLY A 40 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 THR B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 MET B 9 REMARK 465 THR B 10 REMARK 465 ARG B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 ARG B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 ARG B 19 REMARK 465 ARG B 20 REMARK 465 ASN B 21 REMARK 465 ARG B 22 REMARK 465 TRP B 23 REMARK 465 THR B 24 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 SER C 4 REMARK 465 GLY C 5 REMARK 465 THR C 6 REMARK 465 GLY C 7 REMARK 465 LYS C 8 REMARK 465 MET C 9 REMARK 465 THR C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 GLN C 13 REMARK 465 ARG C 14 REMARK 465 ARG C 15 REMARK 465 ALA C 16 REMARK 465 ALA C 17 REMARK 465 ALA C 18 REMARK 465 ARG C 19 REMARK 465 ARG C 20 REMARK 465 ASN C 21 REMARK 465 ARG C 22 REMARK 465 TRP C 23 REMARK 465 THR C 24 REMARK 465 ALA C 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 91 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 54 -159.75 -154.42 REMARK 500 ALA A 56 78.34 -158.63 REMARK 500 LYS A 64 -37.91 64.29 REMARK 500 LYS A 83 44.04 -81.59 REMARK 500 GLU A 84 16.33 -140.56 REMARK 500 GLU A 116 50.33 -170.39 REMARK 500 ALA A 117 -12.31 -149.21 REMARK 500 TYR A 137 89.80 -152.53 REMARK 500 ASN A 151 30.64 -91.46 REMARK 500 TYR A 157 101.25 -160.25 REMARK 500 LYS A 165 -0.08 71.01 REMARK 500 GLU A 172 87.33 -150.25 REMARK 500 ASP A 182 -114.17 18.78 REMARK 500 PHE A 183 -151.65 -162.87 REMARK 500 VAL B 27 74.19 -118.04 REMARK 500 VAL B 30 119.01 -165.02 REMARK 500 ILE B 43 174.76 55.62 REMARK 500 TRP B 54 -173.96 -172.73 REMARK 500 LYS B 64 -31.39 65.47 REMARK 500 LYS B 81 -73.34 -56.73 REMARK 500 GLU B 84 56.94 -111.54 REMARK 500 LEU B 85 -158.36 -100.35 REMARK 500 PRO B 98 39.87 -78.81 REMARK 500 SER B 99 75.12 -169.03 REMARK 500 ALA B 109 -166.40 -169.58 REMARK 500 GLU B 110 -170.31 -67.96 REMARK 500 LYS B 130 53.08 -111.65 REMARK 500 GLU B 131 -85.73 59.06 REMARK 500 ASP B 139 -72.35 -109.36 REMARK 500 ALA B 140 44.59 -59.47 REMARK 500 PHE B 141 -31.64 -148.40 REMARK 500 LYS B 165 -18.32 70.86 REMARK 500 PRO B 178 73.17 -69.47 REMARK 500 PHE B 184 -114.88 -70.26 REMARK 500 VAL B 187 107.46 62.41 REMARK 500 TYR B 188 57.30 -91.50 REMARK 500 TYR C 49 -169.30 -113.80 REMARK 500 ALA C 56 89.10 -154.95 REMARK 500 ALA C 60 -94.70 55.29 REMARK 500 ILE C 61 106.42 45.93 REMARK 500 THR C 62 -138.16 -82.38 REMARK 500 GLU C 84 75.19 -101.34 REMARK 500 LEU C 92 85.97 -154.52 REMARK 500 LYS C 111 77.97 -55.11 REMARK 500 ALA C 135 65.19 -164.45 REMARK 500 ASP C 139 -121.31 -100.67 REMARK 500 ALA C 140 -61.12 54.98 REMARK 500 VAL C 169 94.24 -64.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 139 ALA A 140 -149.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6000 RELATED DB: EMDB REMARK 900 RELATED ID: 3J7L RELATED DB: PDB REMARK 900 RELATED ID: 3J7M RELATED DB: PDB DBREF 3J7N A 1 189 UNP P03602 CAPSD_BMV 1 189 DBREF 3J7N B 1 189 UNP P03602 CAPSD_BMV 1 189 DBREF 3J7N C 1 189 UNP P03602 CAPSD_BMV 1 189 SEQRES 1 A 189 MET SER THR SER GLY THR GLY LYS MET THR ARG ALA GLN SEQRES 2 A 189 ARG ARG ALA ALA ALA ARG ARG ASN ARG TRP THR ALA ARG SEQRES 3 A 189 VAL GLN PRO VAL ILE VAL GLU PRO LEU ALA ALA GLY GLN SEQRES 4 A 189 GLY LYS ALA ILE LYS ALA ILE ALA GLY TYR SER ILE SER SEQRES 5 A 189 LYS TRP GLU ALA SER SER ASP ALA ILE THR ALA LYS ALA SEQRES 6 A 189 THR ASN ALA MET SER ILE THR LEU PRO HIS GLU LEU SER SEQRES 7 A 189 SER GLU LYS ASN LYS GLU LEU LYS VAL GLY ARG VAL LEU SEQRES 8 A 189 LEU TRP LEU GLY LEU LEU PRO SER VAL ALA GLY ARG ILE SEQRES 9 A 189 LYS ALA CYS VAL ALA GLU LYS GLN ALA GLN ALA GLU ALA SEQRES 10 A 189 ALA PHE GLN VAL ALA LEU ALA VAL ALA ASP SER SER LYS SEQRES 11 A 189 GLU VAL VAL ALA ALA MET TYR THR ASP ALA PHE ARG GLY SEQRES 12 A 189 ALA THR LEU GLY ASP LEU LEU ASN LEU GLN ILE TYR LEU SEQRES 13 A 189 TYR ALA SER GLU ALA VAL PRO ALA LYS ALA VAL VAL VAL SEQRES 14 A 189 HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE ASP ASP SEQRES 15 A 189 PHE PHE THR PRO VAL TYR ARG SEQRES 1 B 189 MET SER THR SER GLY THR GLY LYS MET THR ARG ALA GLN SEQRES 2 B 189 ARG ARG ALA ALA ALA ARG ARG ASN ARG TRP THR ALA ARG SEQRES 3 B 189 VAL GLN PRO VAL ILE VAL GLU PRO LEU ALA ALA GLY GLN SEQRES 4 B 189 GLY LYS ALA ILE LYS ALA ILE ALA GLY TYR SER ILE SER SEQRES 5 B 189 LYS TRP GLU ALA SER SER ASP ALA ILE THR ALA LYS ALA SEQRES 6 B 189 THR ASN ALA MET SER ILE THR LEU PRO HIS GLU LEU SER SEQRES 7 B 189 SER GLU LYS ASN LYS GLU LEU LYS VAL GLY ARG VAL LEU SEQRES 8 B 189 LEU TRP LEU GLY LEU LEU PRO SER VAL ALA GLY ARG ILE SEQRES 9 B 189 LYS ALA CYS VAL ALA GLU LYS GLN ALA GLN ALA GLU ALA SEQRES 10 B 189 ALA PHE GLN VAL ALA LEU ALA VAL ALA ASP SER SER LYS SEQRES 11 B 189 GLU VAL VAL ALA ALA MET TYR THR ASP ALA PHE ARG GLY SEQRES 12 B 189 ALA THR LEU GLY ASP LEU LEU ASN LEU GLN ILE TYR LEU SEQRES 13 B 189 TYR ALA SER GLU ALA VAL PRO ALA LYS ALA VAL VAL VAL SEQRES 14 B 189 HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE ASP ASP SEQRES 15 B 189 PHE PHE THR PRO VAL TYR ARG SEQRES 1 C 189 MET SER THR SER GLY THR GLY LYS MET THR ARG ALA GLN SEQRES 2 C 189 ARG ARG ALA ALA ALA ARG ARG ASN ARG TRP THR ALA ARG SEQRES 3 C 189 VAL GLN PRO VAL ILE VAL GLU PRO LEU ALA ALA GLY GLN SEQRES 4 C 189 GLY LYS ALA ILE LYS ALA ILE ALA GLY TYR SER ILE SER SEQRES 5 C 189 LYS TRP GLU ALA SER SER ASP ALA ILE THR ALA LYS ALA SEQRES 6 C 189 THR ASN ALA MET SER ILE THR LEU PRO HIS GLU LEU SER SEQRES 7 C 189 SER GLU LYS ASN LYS GLU LEU LYS VAL GLY ARG VAL LEU SEQRES 8 C 189 LEU TRP LEU GLY LEU LEU PRO SER VAL ALA GLY ARG ILE SEQRES 9 C 189 LYS ALA CYS VAL ALA GLU LYS GLN ALA GLN ALA GLU ALA SEQRES 10 C 189 ALA PHE GLN VAL ALA LEU ALA VAL ALA ASP SER SER LYS SEQRES 11 C 189 GLU VAL VAL ALA ALA MET TYR THR ASP ALA PHE ARG GLY SEQRES 12 C 189 ALA THR LEU GLY ASP LEU LEU ASN LEU GLN ILE TYR LEU SEQRES 13 C 189 TYR ALA SER GLU ALA VAL PRO ALA LYS ALA VAL VAL VAL SEQRES 14 C 189 HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE ASP ASP SEQRES 15 C 189 PHE PHE THR PRO VAL TYR ARG HELIX 1 1 ALA A 117 ALA A 122 1 6 HELIX 2 2 THR A 145 LEU A 150 1 6 HELIX 3 3 PRO A 178 ASP A 182 5 5 HELIX 4 4 LYS B 81 LEU B 85 5 5 HELIX 5 5 GLN B 114 GLN B 120 1 7 HELIX 6 6 THR B 145 ASN B 151 5 7 HELIX 7 7 PRO B 178 ASP B 182 5 5 HELIX 8 8 PRO C 74 SER C 78 5 5 HELIX 9 9 GLN C 114 GLU C 116 5 3 HELIX 10 10 ALA C 117 ALA C 122 1 6 HELIX 11 11 THR C 145 LEU C 150 5 6 HELIX 12 12 PRO C 178 PHE C 183 5 6 SHEET 1 A 3 SER A 52 LYS A 53 0 SHEET 2 A 3 VAL A 167 VAL A 173 -1 O VAL A 173 N SER A 52 SHEET 3 A 3 ALA A 56 SER A 57 -1 N ALA A 56 O VAL A 169 SHEET 1 B 4 SER A 52 LYS A 53 0 SHEET 2 B 4 VAL A 167 VAL A 173 -1 O VAL A 173 N SER A 52 SHEET 3 B 4 VAL A 90 LEU A 96 -1 N TRP A 93 O HIS A 170 SHEET 4 B 4 ALA A 135 MET A 136 -1 O ALA A 135 N LEU A 92 SHEET 1 C 4 MET A 69 SER A 70 0 SHEET 2 C 4 GLN A 153 TYR A 155 -1 O ILE A 154 N MET A 69 SHEET 3 C 4 LYS A 105 ALA A 109 -1 N CYS A 107 O TYR A 155 SHEET 4 C 4 ALA A 126 ASP A 127 -1 O ALA A 126 N ALA A 106 SHEET 1 D 3 TYR B 49 SER B 52 0 SHEET 2 D 3 VAL B 168 VAL B 176 -1 O VAL B 173 N SER B 52 SHEET 3 D 3 LEU B 91 GLY B 95 -1 N LEU B 91 O GLU B 172 SHEET 1 E 3 ALA B 68 SER B 70 0 SHEET 2 E 3 GLN B 153 ALA B 158 -1 O ILE B 154 N MET B 69 SHEET 3 E 3 ILE B 104 ALA B 109 -1 N CYS B 107 O TYR B 155 SHEET 1 F 3 TYR C 49 TRP C 54 0 SHEET 2 F 3 LEU C 171 VAL C 176 -1 O LEU C 171 N TRP C 54 SHEET 3 F 3 VAL C 87 LEU C 91 -1 N ARG C 89 O GLU C 174 SHEET 1 G 2 LEU C 94 LEU C 96 0 SHEET 2 G 2 VAL C 167 VAL C 169 -1 O VAL C 168 N GLY C 95 SHEET 1 H 3 ALA C 126 ASP C 127 0 SHEET 2 H 3 ILE C 104 ALA C 109 -1 N ALA C 106 O ALA C 126 SHEET 3 H 3 GLN C 153 ALA C 158 -1 O TYR C 155 N CYS C 107 CISPEP 1 ARG B 142 GLY B 143 0 -0.19 CISPEP 2 VAL B 187 TYR B 188 0 -6.74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000