HEADER HYDROLASE 07-AUG-14 3J7T TITLE CALCIUM ATPASE STRUCTURE WITH TWO BOUND CALCIUM IONS DETERMINED BY TITLE 2 ELECTRON CRYSTALLOGRAPHY OF THIN 3D CRYSTALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERCA1, SR CA(2+)-ATPASE 1, CALCIUM PUMP 1, CALCIUM- COMPND 5 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL COMPND 6 MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS ION PUMP, MEMBRANE PROTEIN, P-TYPE ATPASE, ACTIVE TRANSPORT, KEYWDS 2 HYDROLASE EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR K.YONEKURA,K.KATO,M.OGASAWARA,M.TOMITA,C.TOYOSHIMA REVDAT 2 28-SEP-16 3J7T 1 JRNL REVDAT 1 18-FEB-15 3J7T 0 JRNL AUTH K.YONEKURA,K.KATO,M.OGASAWARA,M.TOMITA,C.TOYOSHIMA JRNL TITL ELECTRON CRYSTALLOGRAPHY OF ULTRATHIN 3D PROTEIN CRYSTALS: JRNL TITL 2 ATOMIC MODEL WITH CHARGES JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 3368 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25730881 JRNL DOI 10.1073/PNAS.1500724112 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.5 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.96000 REMARK 3 B22 (A**2) : -5.94000 REMARK 3 B33 (A**2) : 10.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.939 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.500 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.798 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.768 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8206 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7691 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11250 ; 1.029 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17193 ; 0.769 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 993 ; 5.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;36.539 ;24.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1382 ;17.001 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;15.807 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1235 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8955 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1441 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3J7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000160359. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D CRYSTAL REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : NULL REMARK 240 TEMPERATURE (KELVIN) : NULL REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : HITACHI HF3000 REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F224HD REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 240 RESOLUTION RANGE HIGH (A) : NULL REMARK 240 RESOLUTION RANGE LOW (A) : NULL REMARK 240 DATA SCALING SOFTWARE : NULL REMARK 240 COMPLETENESS FOR RANGE (%) : NULL REMARK 240 DATA REDUNDANCY : NULL REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :NULL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :NULL REMARK 240 COMPLETENESS FOR SHELL (%) : NULL REMARK 240 DATA REDUNDANCY IN SHELL : NULL REMARK 240 R MERGE FOR SHELL (I) : NULL REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.20100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.15000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.20100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 66.85 30.18 REMARK 500 THR A 21 48.25 -84.27 REMARK 500 THR A 22 -55.64 -171.21 REMARK 500 ILE A 54 -55.98 -123.13 REMARK 500 LYS A 135 42.63 -82.26 REMARK 500 LEU A 180 -79.47 -115.04 REMARK 500 GLU A 183 129.41 -179.45 REMARK 500 THR A 191 74.92 -115.20 REMARK 500 LYS A 205 54.01 -90.47 REMARK 500 ASN A 206 16.54 -144.61 REMARK 500 ALA A 240 -76.59 -68.86 REMARK 500 GLN A 244 76.14 -156.82 REMARK 500 LEU A 253 -39.35 -34.95 REMARK 500 ASN A 280 37.49 -143.33 REMARK 500 LYS A 329 35.12 -92.25 REMARK 500 ARG A 334 -100.70 -65.18 REMARK 500 SER A 335 121.24 -34.10 REMARK 500 THR A 345 98.64 -58.79 REMARK 500 LYS A 352 -67.71 -104.01 REMARK 500 ASN A 359 -54.12 70.87 REMARK 500 CYS A 364 -86.10 -82.31 REMARK 500 MET A 366 138.96 178.77 REMARK 500 SER A 387 8.09 -175.87 REMARK 500 PRO A 391 26.67 -65.07 REMARK 500 CYS A 420 75.07 -66.35 REMARK 500 ASN A 421 104.72 -164.38 REMARK 500 ASP A 422 44.75 -86.53 REMARK 500 ASN A 469 51.37 -142.32 REMARK 500 ALA A 506 -63.40 -91.57 REMARK 500 ALA A 507 66.40 -110.35 REMARK 500 VAL A 508 75.82 -151.10 REMARK 500 PRO A 518 -84.65 -44.27 REMARK 500 ARG A 560 99.53 -57.06 REMARK 500 ASP A 580 103.72 -171.66 REMARK 500 VAL A 594 -54.76 -129.69 REMARK 500 GLU A 644 -65.70 -22.98 REMARK 500 GLU A 646 93.95 -169.82 REMARK 500 GLU A 647 127.43 -39.35 REMARK 500 VAL A 648 18.38 -142.07 REMARK 500 ARG A 672 17.35 -145.92 REMARK 500 ARG A 678 69.17 13.16 REMARK 500 SER A 693 2.08 -66.37 REMARK 500 ASP A 695 16.90 53.68 REMARK 500 ALA A 699 50.73 -142.88 REMARK 500 ASP A 703 -60.73 -165.44 REMARK 500 VAL A 705 -56.90 -19.36 REMARK 500 ASP A 738 -14.85 93.56 REMARK 500 LEU A 783 157.24 -48.46 REMARK 500 ALA A 786 46.35 -76.18 REMARK 500 PRO A 811 178.41 -58.07 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 768 OD1 REMARK 620 2 HOH A1176 O 86.0 REMARK 620 3 HOH A1175 O 86.8 128.0 REMARK 620 4 GLU A 908 OE1 123.8 133.1 92.2 REMARK 620 5 THR A 799 OG1 156.6 81.6 85.4 78.6 REMARK 620 6 GLU A 771 OE2 83.2 74.4 154.7 74.5 112.1 REMARK 620 7 ASP A 800 OD1 77.5 60.9 67.3 150.7 79.1 132.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 796 OD1 REMARK 620 2 ILE A 307 O 153.7 REMARK 620 3 ASP A 800 OD2 74.7 106.5 REMARK 620 4 GLU A 309 OE1 97.1 57.6 83.7 REMARK 620 5 GLU A 309 OE2 82.5 76.7 129.0 54.4 REMARK 620 6 VAL A 304 O 103.6 88.8 148.4 127.3 80.8 REMARK 620 7 ALA A 305 O 106.3 97.6 65.5 133.7 165.2 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 732 OE1 REMARK 620 2 ALA A 714 O 109.2 REMARK 620 3 LEU A 711 O 101.3 87.2 REMARK 620 4 LYS A 712 O 166.6 84.1 80.5 REMARK 620 5 GLU A 732 OE2 48.9 143.0 122.9 119.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SU4 RELATED DB: PDB REMARK 900 RELATED ID: 3J7U RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 994 G IN THIS STRUCTURE IS NATURAL VARIATION ACCORDING TO REMARK 999 DATABASE P04191-2 (AT2A1_RABIT) ISOFORM SERCA1A. C-TERMINAL REMARK 999 RESIDUES 994-1001 (DPEDERRK) ARE REPLACED BY G IN ISOFORM SERCA1A. DBREF 3J7T A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQADV 3J7T GLY A 994 UNP P04191 ASP 994 SEE REMARK 999 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET CA A1001 1 HET CA A1002 1 HET NA A1003 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 NA NA 1+ FORMUL 5 HOH *155(H2 O) HELIX 1 1 ALA A 3 LYS A 7 5 5 HELIX 2 2 CYS A 12 GLY A 17 5 6 HELIX 3 3 THR A 25 TYR A 36 1 12 HELIX 4 4 LEU A 49 ILE A 54 1 6 HELIX 5 5 ILE A 54 TRP A 77 1 24 HELIX 6 6 ILE A 85 LYS A 120 1 36 HELIX 7 7 VAL A 200 LYS A 204 5 5 HELIX 8 8 THR A 226 SER A 229 5 4 HELIX 9 9 THR A 230 ALA A 241 1 12 HELIX 10 10 THR A 247 GLN A 259 1 13 HELIX 11 11 GLN A 259 ILE A 274 1 16 HELIX 12 12 ASN A 275 PHE A 279 5 5 HELIX 13 13 ASP A 281 GLY A 285 5 5 HELIX 14 14 ILE A 289 ILE A 307 1 19 HELIX 15 15 GLY A 310 LYS A 329 1 20 HELIX 16 16 LEU A 336 GLY A 343 1 8 HELIX 17 17 ARG A 403 GLN A 406 5 4 HELIX 18 18 PHE A 407 CYS A 420 1 14 HELIX 19 19 GLU A 439 ASN A 453 1 15 HELIX 20 20 SER A 463 ALA A 468 1 6 HELIX 21 21 CYS A 471 ARG A 476 1 6 HELIX 22 22 SER A 488 ARG A 491 5 4 HELIX 23 23 ALA A 517 ASP A 523 1 7 HELIX 24 24 THR A 538 GLY A 555 1 18 HELIX 25 25 ASP A 580 SER A 582 5 3 HELIX 26 26 ARG A 583 GLU A 588 1 6 HELIX 27 27 GLU A 606 ALA A 617 1 12 HELIX 28 28 ASN A 628 GLY A 640 1 13 HELIX 29 29 GLY A 655 LEU A 661 1 7 HELIX 30 30 PRO A 662 ALA A 669 1 8 HELIX 31 31 CYS A 670 ALA A 673 5 4 HELIX 32 32 SER A 682 SER A 693 1 12 HELIX 33 33 ASP A 707 ALA A 714 1 8 HELIX 34 34 THR A 724 SER A 731 1 8 HELIX 35 35 ASN A 739 GLY A 782 1 44 HELIX 36 36 ILE A 788 THR A 799 1 12 HELIX 37 37 GLY A 801 GLY A 808 1 8 HELIX 38 38 SER A 830 MET A 857 1 28 HELIX 39 39 HIS A 872 CYS A 876 5 5 HELIX 40 40 ASP A 887 GLU A 892 5 6 HELIX 41 41 ALA A 893 SER A 915 1 23 HELIX 42 42 PRO A 926 VAL A 929 5 4 HELIX 43 43 ASN A 930 ILE A 947 1 18 HELIX 44 44 ASP A 951 LYS A 958 1 8 HELIX 45 45 THR A 965 LEU A 975 1 11 HELIX 46 46 LEU A 975 LEU A 992 1 18 SHEET 1 A 2 VAL A 129 TYR A 130 0 SHEET 2 A 2 ILE A 150 VAL A 151 -1 O ILE A 150 N TYR A 130 SHEET 1 B 2 ASP A 162 ILE A 168 0 SHEET 2 B 2 ALA A 219 THR A 225 -1 O ALA A 224 N ASP A 162 SHEET 1 C 3 VAL A 187 ILE A 188 0 SHEET 2 C 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 C 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 D 3 ALA A 331 VAL A 333 0 SHEET 2 D 3 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 D 3 ILE A 718 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 1 E 4 VAL A 347 ASP A 351 0 SHEET 2 E 4 ARG A 620 ILE A 624 1 O ILE A 624 N SER A 350 SHEET 3 E 4 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 4 E 4 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 F 7 PHE A 376 ASN A 380 0 SHEET 2 F 7 SER A 362 ASP A 373 -1 N ASP A 373 O PHE A 376 SHEET 3 F 7 LEU A 591 LEU A 600 -1 O LEU A 600 N SER A 362 SHEET 4 F 7 ARG A 560 ARG A 567 -1 N THR A 566 O THR A 592 SHEET 5 F 7 MET A 512 GLY A 516 -1 N VAL A 514 O ALA A 565 SHEET 6 F 7 SER A 493 PRO A 500 -1 N MET A 494 O LYS A 515 SHEET 7 F 7 MET A 479 LEU A 485 -1 N LYS A 480 O SER A 499 SHEET 1 G 5 PHE A 376 ASN A 380 0 SHEET 2 G 5 SER A 362 ASP A 373 -1 N ASP A 373 O PHE A 376 SHEET 3 G 5 LEU A 591 LEU A 600 -1 O LEU A 600 N SER A 362 SHEET 4 G 5 CYS A 525 VAL A 530 1 N TYR A 527 O PHE A 593 SHEET 5 G 5 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 H 2 SER A 424 PHE A 427 0 SHEET 2 H 2 TYR A 434 VAL A 437 -1 O VAL A 437 N SER A 424 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.03 LINK OD1 ASN A 768 CA CA A1002 1555 1555 2.22 LINK OD1 ASN A 796 CA CA A1001 1555 1555 2.23 LINK OE1 GLU A 732 NA NA A1003 1555 1555 2.26 LINK CA CA A1002 O HOH A1176 1555 1555 2.30 LINK CA CA A1002 O HOH A1175 1555 1555 2.30 LINK O ILE A 307 CA CA A1001 1555 1555 2.31 LINK O ALA A 714 NA NA A1003 1555 1555 2.32 LINK OD2 ASP A 800 CA CA A1001 1555 1555 2.35 LINK OE1 GLU A 309 CA CA A1001 1555 1555 2.37 LINK OE1 GLU A 908 CA CA A1002 1555 1555 2.38 LINK OG1 THR A 799 CA CA A1002 1555 1555 2.38 LINK OE2 GLU A 771 CA CA A1002 1555 1555 2.38 LINK OD1 ASP A 800 CA CA A1002 1555 1555 2.38 LINK OE2 GLU A 309 CA CA A1001 1555 1555 2.40 LINK O VAL A 304 CA CA A1001 1555 1555 2.40 LINK O LEU A 711 NA NA A1003 1555 1555 2.45 LINK O ALA A 305 CA CA A1001 1555 1555 2.68 LINK O LYS A 712 NA NA A1003 1555 1555 2.78 LINK OE2 GLU A 732 NA NA A1003 1555 1555 2.87 SITE 1 AC1 6 VAL A 304 ALA A 305 ILE A 307 GLU A 309 SITE 2 AC1 6 ASN A 796 ASP A 800 SITE 1 AC2 7 ASN A 768 GLU A 771 THR A 799 ASP A 800 SITE 2 AC2 7 GLU A 908 HOH A1175 HOH A1176 SITE 1 AC3 4 LEU A 711 LYS A 712 ALA A 714 GLU A 732 CRYST1 166.300 64.402 147.316 90.00 98.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006013 0.000000 0.000878 0.00000 SCALE2 0.000000 0.015527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006860 0.00000