HEADER VIRUS 21-JUL-15 3JB4 TITLE STRUCTURE OF LJUNGAN VIRUS: INSIGHT INTO PICORNAVIRUS PACKAGING COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 504-800; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VP0; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 1-259; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: VP3; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: UNP RESIDUES 260-503; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LJUNGAN VIRUS 87-012; SOURCE 3 ORGANISM_TAXID: 172315; SOURCE 4 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: AFRICAN GREEN MONKEY; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: KIDNEY (VERO) CELL; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LJUNGAN VIRUS 87-012; SOURCE 10 ORGANISM_TAXID: 172315; SOURCE 11 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: AFRICAN GREEN MONKEY; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: KIDNEY (VERO) CELL; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: LJUNGAN VIRUS 87-012; SOURCE 17 ORGANISM_TAXID: 172315; SOURCE 18 EXPRESSION_SYSTEM: CHLOROCEBUS AETHIOPS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: AFRICAN GREEN MONKEY; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9534; SOURCE 21 EXPRESSION_SYSTEM_CELL_LINE: KIDNEY (VERO) CELL KEYWDS PICORNAVIRUSES, ASSEMBLY, PATHOGEN, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR L.ZHU,X.X.WANG,J.S.REN,C.PORTA,H.WENHAM,J.-O.EKSTROM,A.PANJWANI, AUTHOR 2 N.J.KNOWLES,A.KOTECHA,A.SIEBERT,M.LINDBERG,E.E.FRY,Z.H.RAO, AUTHOR 3 T.J.TUTHILL,D.I.STUART REVDAT 4 06-NOV-24 3JB4 1 REMARK REVDAT 3 18-DEC-19 3JB4 1 SEQADV SCALE REVDAT 2 18-JUL-18 3JB4 1 REMARK REVDAT 1 21-OCT-15 3JB4 0 JRNL AUTH L.ZHU,X.WANG,J.REN,C.PORTA,H.WENHAM,J.O.EKSTROM,A.PANJWANI, JRNL AUTH 2 N.J.KNOWLES,A.KOTECHA,C.A.SIEBERT,A.M.LINDBERG,E.E.FRY, JRNL AUTH 3 Z.RAO,T.J.TUTHILL,D.I.STUART JRNL TITL STRUCTURE OF LJUNGAN VIRUS PROVIDES INSIGHT INTO GENOME JRNL TITL 2 PACKAGING OF THIS PICORNAVIRUS. JRNL REF NAT COMMUN V. 6 8316 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26446437 JRNL DOI 10.1038/NCOMMS9316 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.350 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 5558 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SINGLE PARTICLE--APPLIED SYMMETRY: I) REMARK 4 REMARK 4 3JB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000160478. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LJUNGAN VIRUS (TYPE: 87-012) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : 200 MESH GOLD GRID WITH THIN REMARK 245 CARBON SUPPORT, GLOW-DISCHARGED REMARK 245 IN AMYLAMINE ATMOSPHERE REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FOR 3 SECONDS BEFORE REMARK 245 PLUNGING INTO LIQUID ETHANE REMARK 245 (FEI VITROBOT MARK III). REMARK 245 SAMPLE BUFFER : PBS REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 02-FEB-15 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : GATAN K2 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.670820 -0.688191 0.276393 180.05747 REMARK 350 BIOMT2 2 0.162460 0.500000 0.850651 -124.68588 REMARK 350 BIOMT3 2 -0.723607 -0.525731 0.447214 437.91622 REMARK 350 BIOMT1 3 0.138197 -0.951057 -0.276393 507.68846 REMARK 350 BIOMT2 3 -0.425325 -0.309017 0.850651 214.73707 REMARK 350 BIOMT3 3 -0.894427 0.000000 -0.447214 569.01874 REMARK 350 BIOMT1 4 0.138197 -0.425325 -0.894427 530.11809 REMARK 350 BIOMT2 4 -0.951057 -0.309017 0.000000 549.19788 REMARK 350 BIOMT3 4 -0.276393 0.850651 -0.447214 212.12833 REMARK 350 BIOMT1 5 0.670820 0.162460 -0.723607 216.34936 REMARK 350 BIOMT2 5 -0.688191 0.500000 -0.525731 416.48307 REMARK 350 BIOMT3 5 0.276393 0.850651 0.447214 -139.54459 REMARK 350 BIOMT1 6 -0.861803 -0.425325 -0.276393 622.93586 REMARK 350 BIOMT2 6 -0.425325 0.309017 0.850651 64.55482 REMARK 350 BIOMT3 6 -0.276393 0.850651 -0.447214 212.12834 REMARK 350 BIOMT1 7 -0.447214 0.525731 -0.723607 399.75672 REMARK 350 BIOMT2 7 -0.850651 0.000000 0.525731 321.95551 REMARK 350 BIOMT3 7 0.276393 0.850651 0.447214 -139.54458 REMARK 350 BIOMT1 8 0.309017 0.951057 0.000000 -63.19784 REMARK 350 BIOMT2 8 -0.951057 0.309017 0.000000 399.01562 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 9 0.361803 0.262866 0.894427 -126.14037 REMARK 350 BIOMT2 9 -0.587785 0.809017 0.000000 189.24070 REMARK 350 BIOMT3 9 -0.723607 -0.525731 0.447214 437.91620 REMARK 350 BIOMT1 10 -0.361803 -0.587785 0.723607 297.91358 REMARK 350 BIOMT2 10 -0.262866 0.809017 0.525731 -17.46745 REMARK 350 BIOMT3 10 -0.894427 0.000000 -0.447214 569.01873 REMARK 350 BIOMT1 11 0.809017 0.587785 0.000000 -96.42298 REMARK 350 BIOMT2 11 0.587785 -0.809017 0.000000 296.75929 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 485.99996 REMARK 350 BIOMT1 12 0.638196 -0.262866 0.723607 -24.04188 REMARK 350 BIOMT2 12 0.262866 -0.809017 -0.525731 503.46744 REMARK 350 BIOMT3 12 0.723607 0.525731 -0.447213 48.08375 REMARK 350 BIOMT1 13 -0.138197 -0.951057 0.276393 440.52499 REMARK 350 BIOMT2 13 0.425325 -0.309017 -0.850651 421.44517 REMARK 350 BIOMT3 13 0.894427 0.000000 0.447214 -83.01870 REMARK 350 BIOMT1 14 -0.447214 -0.525731 -0.723607 655.26200 REMARK 350 BIOMT2 14 0.850651 0.000000 -0.525731 164.04448 REMARK 350 BIOMT3 14 0.276393 -0.850651 0.447214 273.87173 REMARK 350 BIOMT1 15 0.138197 0.425325 -0.894427 323.40991 REMARK 350 BIOMT2 15 0.951057 -0.309017 0.000000 86.98437 REMARK 350 BIOMT3 15 -0.276393 -0.850651 -0.447214 625.54460 REMARK 350 BIOMT1 16 -0.947214 -0.162460 0.276393 445.48712 REMARK 350 BIOMT2 16 -0.162460 -0.500000 -0.850651 610.68587 REMARK 350 BIOMT3 16 0.276393 -0.850651 0.447214 273.87171 REMARK 350 BIOMT1 17 -0.861803 0.425325 -0.276393 416.22768 REMARK 350 BIOMT2 17 0.425325 0.309017 -0.850651 271.26292 REMARK 350 BIOMT3 17 -0.276393 -0.850651 -0.447214 625.54461 REMARK 350 BIOMT1 18 -0.309017 0.951057 0.000000 86.98439 REMARK 350 BIOMT2 18 0.951057 0.309017 0.000000 -63.19789 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 485.99997 REMARK 350 BIOMT1 19 -0.052787 0.688191 0.723607 -87.23972 REMARK 350 BIOMT2 19 0.688191 -0.500000 0.525731 69.51692 REMARK 350 BIOMT3 19 0.723607 0.525731 -0.447213 48.08375 REMARK 350 BIOMT1 20 -0.447214 0.000000 0.894427 134.32715 REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 485.99999 REMARK 350 BIOMT3 20 0.894427 0.000000 0.447214 -83.01873 REMARK 350 BIOMT1 21 0.447214 -0.525731 0.723607 86.24327 REMARK 350 BIOMT2 21 -0.850651 0.000000 0.525731 321.95551 REMARK 350 BIOMT3 21 -0.276393 -0.850651 -0.447214 625.54458 REMARK 350 BIOMT1 22 -0.309017 -0.951057 0.000000 549.19784 REMARK 350 BIOMT2 22 -0.951057 0.309017 0.000000 399.01562 REMARK 350 BIOMT3 22 0.000000 0.000000 -1.000000 486.00001 REMARK 350 BIOMT1 23 -0.361803 -0.262866 -0.894427 612.14037 REMARK 350 BIOMT2 23 -0.587785 0.809017 0.000000 189.24070 REMARK 350 BIOMT3 23 0.723607 0.525731 -0.447214 48.08380 REMARK 350 BIOMT1 24 0.361803 0.587785 -0.723607 188.08642 REMARK 350 BIOMT2 24 -0.262866 0.809017 0.525731 -17.46745 REMARK 350 BIOMT3 24 0.894427 0.000000 0.447214 -83.01872 REMARK 350 BIOMT1 25 0.861803 0.425325 0.276393 -136.93586 REMARK 350 BIOMT2 25 -0.425325 0.309017 0.850651 64.55482 REMARK 350 BIOMT3 25 0.276393 -0.850651 0.447214 273.87166 REMARK 350 BIOMT1 26 -0.361803 0.262866 -0.894427 484.38769 REMARK 350 BIOMT2 26 0.587785 0.809017 0.000000 -96.42296 REMARK 350 BIOMT3 26 0.723607 -0.525731 -0.447214 303.58911 REMARK 350 BIOMT1 27 0.447214 0.850651 -0.276393 -5.21752 REMARK 350 BIOMT2 27 0.525731 0.000000 0.850651 -91.46081 REMARK 350 BIOMT3 27 0.723607 -0.525731 -0.447214 303.58907 REMARK 350 BIOMT1 28 0.638196 0.262866 0.723607 -151.79456 REMARK 350 BIOMT2 28 -0.262866 -0.809017 0.525731 375.71481 REMARK 350 BIOMT3 28 0.723607 -0.525731 -0.447213 303.58906 REMARK 350 BIOMT1 29 -0.052787 -0.688191 0.723607 247.22105 REMARK 350 BIOMT2 29 -0.688191 -0.500000 -0.525731 659.48306 REMARK 350 BIOMT3 29 0.723607 -0.525731 -0.447213 303.58909 REMARK 350 BIOMT1 30 -0.670820 -0.688191 -0.276393 640.40330 REMARK 350 BIOMT2 30 -0.162460 0.500000 -0.850651 367.68588 REMARK 350 BIOMT3 30 0.723607 -0.525731 -0.447214 303.58912 REMARK 350 BIOMT1 31 0.052787 0.688191 -0.723607 238.77895 REMARK 350 BIOMT2 31 -0.688191 -0.500000 -0.525731 659.48306 REMARK 350 BIOMT3 31 -0.723607 0.525731 0.447213 182.41092 REMARK 350 BIOMT1 32 0.670820 0.688191 0.276393 -154.40330 REMARK 350 BIOMT2 32 -0.162460 0.500000 -0.850651 367.68588 REMARK 350 BIOMT3 32 -0.723607 0.525731 0.447214 182.41088 REMARK 350 BIOMT1 33 0.361803 -0.262866 0.894427 1.61231 REMARK 350 BIOMT2 33 0.587785 0.809017 0.000000 -96.42296 REMARK 350 BIOMT3 33 -0.723607 0.525731 0.447214 182.41090 REMARK 350 BIOMT1 34 -0.447214 -0.850651 0.276393 491.21751 REMARK 350 BIOMT2 34 0.525731 0.000000 0.850651 -91.46081 REMARK 350 BIOMT3 34 -0.723607 0.525731 0.447214 182.41094 REMARK 350 BIOMT1 35 -0.638196 -0.262866 -0.723607 637.79456 REMARK 350 BIOMT2 35 -0.262866 -0.809017 0.525731 375.71481 REMARK 350 BIOMT3 35 -0.723607 0.525731 0.447213 182.41095 REMARK 350 BIOMT1 36 -0.138197 -0.425325 0.894427 162.59009 REMARK 350 BIOMT2 36 0.951057 -0.309017 0.000000 86.98437 REMARK 350 BIOMT3 36 0.276393 0.850651 0.447214 -139.54460 REMARK 350 BIOMT1 37 -0.809017 -0.587785 0.000000 582.42298 REMARK 350 BIOMT2 37 0.587785 -0.809017 0.000000 296.75929 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 0.00005 REMARK 350 BIOMT1 38 -0.638196 0.262866 -0.723607 510.04188 REMARK 350 BIOMT2 38 0.262866 -0.809017 -0.525731 503.46744 REMARK 350 BIOMT3 38 -0.723607 -0.525731 0.447213 437.91625 REMARK 350 BIOMT1 39 0.138197 0.951057 -0.276393 45.47501 REMARK 350 BIOMT2 39 0.425325 -0.309017 -0.850651 421.44517 REMARK 350 BIOMT3 39 -0.894427 0.000000 -0.447214 569.01871 REMARK 350 BIOMT1 40 0.447214 0.525731 0.723607 -169.26200 REMARK 350 BIOMT2 40 0.850651 0.000000 -0.525731 164.04448 REMARK 350 BIOMT3 40 -0.276393 0.850651 -0.447214 212.12828 REMARK 350 BIOMT1 41 0.447214 -0.850651 -0.276393 408.19879 REMARK 350 BIOMT2 41 -0.525731 0.000000 -0.850651 577.46080 REMARK 350 BIOMT3 41 0.723607 0.525731 -0.447214 48.08379 REMARK 350 BIOMT1 42 0.361803 -0.587785 -0.723607 473.75004 REMARK 350 BIOMT2 42 0.262866 0.809017 -0.525731 110.28519 REMARK 350 BIOMT3 42 0.894427 0.000000 0.447214 -83.01870 REMARK 350 BIOMT1 43 0.670820 -0.162460 -0.723607 295.30481 REMARK 350 BIOMT2 43 0.688191 0.500000 0.525731 -173.48307 REMARK 350 BIOMT3 43 0.276393 -0.850651 0.447214 273.87170 REMARK 350 BIOMT1 44 0.947214 -0.162460 -0.276393 119.46833 REMARK 350 BIOMT2 44 0.162460 -0.500000 0.850651 118.31411 REMARK 350 BIOMT3 44 -0.276393 -0.850651 -0.447214 625.54458 REMARK 350 BIOMT1 45 0.809017 -0.587785 0.000000 189.24065 REMARK 350 BIOMT2 45 -0.587785 -0.809017 0.000000 582.42295 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 485.99998 REMARK 350 BIOMT1 46 0.052787 -0.688191 -0.723607 573.23972 REMARK 350 BIOMT2 46 0.688191 -0.500000 0.525731 69.51692 REMARK 350 BIOMT3 46 -0.723607 -0.525731 0.447213 437.91626 REMARK 350 BIOMT1 47 0.447214 0.000000 -0.894427 351.67285 REMARK 350 BIOMT2 47 0.000000 -1.000000 0.000000 485.99999 REMARK 350 BIOMT3 47 -0.894427 0.000000 -0.447214 569.01873 REMARK 350 BIOMT1 48 0.947214 0.162460 -0.276393 40.51288 REMARK 350 BIOMT2 48 -0.162460 -0.500000 -0.850651 610.68587 REMARK 350 BIOMT3 48 -0.276393 0.850651 -0.447214 212.12829 REMARK 350 BIOMT1 49 0.861803 -0.425325 0.276393 69.77232 REMARK 350 BIOMT2 49 0.425325 0.309017 -0.850651 271.26292 REMARK 350 BIOMT3 49 0.276393 0.850651 0.447214 -139.54460 REMARK 350 BIOMT1 50 0.309017 -0.951057 0.000000 399.01561 REMARK 350 BIOMT2 50 0.951057 0.309017 0.000000 -63.19789 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 0.00003 REMARK 350 BIOMT1 51 -0.138197 0.951057 0.276393 -21.68847 REMARK 350 BIOMT2 51 -0.425325 -0.309017 0.850651 214.73707 REMARK 350 BIOMT3 51 0.894427 0.000000 0.447214 -83.01874 REMARK 350 BIOMT1 52 -0.138197 0.425325 0.894427 -44.11809 REMARK 350 BIOMT2 52 -0.951057 -0.309017 0.000000 549.19788 REMARK 350 BIOMT3 52 0.276393 -0.850651 0.447214 273.87167 REMARK 350 BIOMT1 53 -0.670820 -0.162460 0.723607 269.65064 REMARK 350 BIOMT2 53 -0.688191 0.500000 -0.525731 416.48307 REMARK 350 BIOMT3 53 -0.276393 -0.850651 -0.447214 625.54460 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 486.00000 REMARK 350 BIOMT2 54 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 54 0.000000 0.000000 -1.000000 486.00000 REMARK 350 BIOMT1 55 -0.670820 0.688191 -0.276393 305.94253 REMARK 350 BIOMT2 55 0.162460 0.500000 0.850651 -124.68588 REMARK 350 BIOMT3 55 0.723607 0.525731 -0.447214 48.08378 REMARK 350 BIOMT1 56 -0.361803 0.587785 0.723607 12.24995 REMARK 350 BIOMT2 56 0.262866 0.809017 -0.525731 110.28518 REMARK 350 BIOMT3 56 -0.894427 0.000000 -0.447214 569.01870 REMARK 350 BIOMT1 57 -0.670820 0.162460 0.723607 190.69519 REMARK 350 BIOMT2 57 0.688191 0.500000 0.525731 -173.48307 REMARK 350 BIOMT3 57 -0.276393 0.850651 -0.447214 212.12830 REMARK 350 BIOMT1 58 -0.947214 0.162460 0.276393 366.53167 REMARK 350 BIOMT2 58 0.162460 -0.500000 0.850651 118.31411 REMARK 350 BIOMT3 58 0.276393 0.850651 0.447214 -139.54458 REMARK 350 BIOMT1 59 -0.809017 0.587785 0.000000 296.75935 REMARK 350 BIOMT2 59 -0.587785 -0.809017 0.000000 582.42295 REMARK 350 BIOMT3 59 0.000000 0.000000 1.000000 0.00003 REMARK 350 BIOMT1 60 -0.447214 0.850651 0.276393 77.80121 REMARK 350 BIOMT2 60 -0.525731 0.000000 -0.850651 577.46080 REMARK 350 BIOMT3 60 -0.723607 -0.525731 0.447214 437.91622 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 TRP A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 MET A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 ASN A 17 REMARK 465 PRO A 18 REMARK 465 ASP A 19 REMARK 465 GLU A 20 REMARK 465 ILE A 21 REMARK 465 GLN A 22 REMARK 465 ASP A 23 REMARK 465 ASN A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 ILE A 27 REMARK 465 GLN A 28 REMARK 465 THR A 29 REMARK 465 GLN A 30 REMARK 465 SER A 243 REMARK 465 ILE A 244 REMARK 465 LEU A 245 REMARK 465 GLU A 246 REMARK 465 ARG A 247 REMARK 465 VAL A 248 REMARK 465 ASP A 249 REMARK 465 GLU A 250 REMARK 465 ALA A 251 REMARK 465 ASN A 252 REMARK 465 ALA A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 LEU A 256 REMARK 465 GLU A 257 REMARK 465 ALA A 258 REMARK 465 VAL A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 465 ARG A 263 REMARK 465 THR A 264 REMARK 465 PRO A 265 REMARK 465 ASP A 266 REMARK 465 ALA A 267 REMARK 465 PRO A 268 REMARK 465 LEU A 269 REMARK 465 ARG A 270 REMARK 465 LEU A 271 REMARK 465 LYS A 272 REMARK 465 PHE A 273 REMARK 465 ASN A 274 REMARK 465 PRO A 275 REMARK 465 GLU A 276 REMARK 465 ASP A 277 REMARK 465 PRO A 278 REMARK 465 LEU A 279 REMARK 465 LYS A 280 REMARK 465 GLN A 281 REMARK 465 LEU A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 ALA A 286 REMARK 465 LYS A 287 REMARK 465 ALA A 288 REMARK 465 TYR A 289 REMARK 465 PHE A 290 REMARK 465 ASN A 291 REMARK 465 ILE A 292 REMARK 465 MET A 293 REMARK 465 HIS A 294 REMARK 465 SER A 295 REMARK 465 ASP A 296 REMARK 465 GLU A 297 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 MET B 6 REMARK 465 ASN B 7 REMARK 465 PRO B 8 REMARK 465 VAL B 9 REMARK 465 GLY B 10 REMARK 465 ASN B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 THR B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 THR B 19 REMARK 465 VAL B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 LEU B 23 REMARK 465 LEU B 24 REMARK 465 GLN B 25 REMARK 465 ASN B 26 REMARK 465 PRO B 27 REMARK 465 SER B 28 REMARK 465 VAL B 29 REMARK 465 GLU B 30 REMARK 465 GLU B 31 REMARK 465 LYS B 32 REMARK 465 GLU B 33 REMARK 465 MET B 34 REMARK 465 ASP B 35 REMARK 465 SER B 36 REMARK 465 GLN B 259 REMARK 465 GLY C 1 REMARK 465 LYS C 2 REMARK 465 ARG C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 183 OG1 THR B 187 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 124 -71.64 -81.81 REMARK 500 ASN A 198 -76.67 -60.08 REMARK 500 PHE A 231 138.96 69.63 REMARK 500 THR B 45 -116.73 53.28 REMARK 500 ALA B 92 72.46 44.57 REMARK 500 GLN B 103 -5.21 67.65 REMARK 500 TRP B 116 58.86 -141.78 REMARK 500 CYS B 246 74.54 59.44 REMARK 500 ILE B 256 -64.11 -130.90 REMARK 500 VAL C 16 -148.17 59.93 REMARK 500 ARG C 17 172.83 171.07 REMARK 500 GLU C 24 -75.28 -84.90 REMARK 500 VAL C 99 70.07 59.91 REMARK 500 TYR C 157 -162.20 55.14 REMARK 500 GLN C 159 -17.21 79.77 REMARK 500 ASN C 176 -61.69 -127.31 REMARK 500 VAL C 235 76.77 41.13 REMARK 500 MET C 243 -4.07 73.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 84 GLY C 85 -35.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6394 RELATED DB: EMDB DBREF 3JB4 A 1 297 UNP Q8JV21 Q8JV21_9PICO 504 800 DBREF 3JB4 B 1 259 UNP Q8JV21 Q8JV21_9PICO 1 259 DBREF 3JB4 C 1 244 UNP Q8JV21 Q8JV21_9PICO 260 503 SEQADV 3JB4 LEU A 40 UNP Q8JV21 ALA 543 CONFLICT SEQADV 3JB4 THR A 80 UNP Q8JV21 SER 583 CONFLICT SEQADV 3JB4 HIS A 125 UNP Q8JV21 PHE 628 CONFLICT SEQADV 3JB4 ALA A 242 UNP Q8JV21 ARG 745 CONFLICT SEQADV 3JB4 LEU B 112 UNP Q8JV21 PRO 112 CONFLICT SEQADV 3JB4 ASP C 161 UNP Q8JV21 GLU 420 CONFLICT SEQADV 3JB4 MET C 243 UNP Q8JV21 TRP 502 CONFLICT SEQRES 1 A 297 GLY LEU HIS SER TRP GLY SER GLU MET ASP LEU VAL ASP SEQRES 2 A 297 SER LEU ASP ASN PRO ASP GLU ILE GLN ASP ASN GLU GLU SEQRES 3 A 297 ILE GLN THR GLN ASN VAL GLU ALA ALA GLN GLY GLU GLU SEQRES 4 A 297 LEU ALA THR GLU VAL GLY LEU ARG ALA THR GLU ASN ASP SEQRES 5 A 297 GLY SER LEU SER GLU GLN LEU ASN MET SER GLN PRO MET SEQRES 6 A 297 PHE LEU ASN PHE LYS LYS HIS LYS VAL ASN ILE TYR ALA SEQRES 7 A 297 ALA THR HIS THR LYS VAL ASP HIS ILE PHE GLY ARG ALA SEQRES 8 A 297 TRP ALA VAL GLY VAL PHE ASN THR GLU THR ALA ALA ILE SEQRES 9 A 297 GLN LYS PHE ASP LEU HIS PHE PRO THR SER THR HIS GLY SEQRES 10 A 297 ALA LEU SER ARG PHE PHE CYS HIS TRP THR GLY GLU LEU SEQRES 11 A 297 ASN ILE HIS ILE LEU ASN VAL SER THR THR ASN ALA PHE SEQRES 12 A 297 LEU LYS VAL ALA HIS THR TRP PHE GLY THR ASP SER GLY SEQRES 13 A 297 ILE ALA ARG THR ALA THR LEU GLU SER ASN GLY THR MET SEQRES 14 A 297 ILE ILE PRO PRO ASN GLU GLN MET THR LEU CYS VAL PRO SEQRES 15 A 297 TYR TYR SER GLU VAL PRO LEU ARG CYS VAL LYS GLY SER SEQRES 16 A 297 ASP ARG ASN SER ALA GLY LEU GLY SER LEU PHE THR GLN SEQRES 17 A 297 ALA VAL GLY ARG THR ILE SER ASN ARG VAL GLN ILE PHE SEQRES 18 A 297 VAL SER PHE ARG CYS PRO ASN PHE PHE PHE PRO LEU PRO SEQRES 19 A 297 ALA PRO ARG GLU ALA THR SER ALA SER ILE LEU GLU ARG SEQRES 20 A 297 VAL ASP GLU ALA ASN ALA GLU GLU LEU GLU ALA VAL LEU SEQRES 21 A 297 GLU ALA ARG THR PRO ASP ALA PRO LEU ARG LEU LYS PHE SEQRES 22 A 297 ASN PRO GLU ASP PRO LEU LYS GLN LEU ARG GLU ALA ALA SEQRES 23 A 297 LYS ALA TYR PHE ASN ILE MET HIS SER ASP GLU SEQRES 1 B 259 MET ALA ALA SER LYS MET ASN PRO VAL GLY ASN LEU LEU SEQRES 2 B 259 SER THR VAL SER SER THR VAL GLY SER LEU LEU GLN ASN SEQRES 3 B 259 PRO SER VAL GLU GLU LYS GLU MET ASP SER ASP ARG VAL SEQRES 4 B 259 ALA ALA SER THR THR THR ASN ALA GLY ASN LEU VAL GLN SEQRES 5 B 259 ALA SER VAL ALA PRO THR MET PRO VAL LYS PRO ASP PHE SEQRES 6 B 259 LYS ASN THR ASP ASP PHE LEU SER MET SER TYR ARG SER SEQRES 7 B 259 THR THR ALA PRO THR ASN PRO THR LYS MET VAL HIS LEU SEQRES 8 B 259 ALA HIS GLY THR TRP THR THR ASN GLN HIS ARG GLN ALA SEQRES 9 B 259 LEU VAL ALA SER ILE THR LEU LEU GLN ALA PHE TRP PRO SEQRES 10 B 259 ASN GLN ASP PHE PRO ALA TRP GLY GLN SER ARG TYR PHE SEQRES 11 B 259 ALA ALA VAL ARG CYS GLY PHE HIS ILE GLN VAL GLN LEU SEQRES 12 B 259 ASN VAL ASN ILE GLY SER ALA GLY CYS LEU ILE ALA ALA SEQRES 13 B 259 TYR MET PRO LYS THR ALA HIS ASP HIS MET ASN THR TYR SEQRES 14 B 259 THR PHE GLY SER TYR THR ASN LEU PRO HIS VAL LEU MET SEQRES 15 B 259 ASN ALA ALA THR THR SER GLN ALA ASP LEU TYR ILE PRO SEQRES 16 B 259 TYR VAL PHE ASN HIS ASN TYR ALA ARG THR ASP SER ASP SEQRES 17 B 259 ASP LEU GLY GLY ILE TYR ILE TRP VAL TRP SER ALA LEU SEQRES 18 B 259 THR VAL PRO SER GLY SER PRO THR THR VAL ASP VAL THR SEQRES 19 B 259 ILE PHE GLY SER LEU LEU ASP LEU ASP PHE GLN CYS PRO SEQRES 20 B 259 ARG PRO PRO GLY ALA ASP THR VAL ILE TYR THR GLN SEQRES 1 C 244 GLY LYS ARG THR VAL ARG LYS THR LYS THR SER LYS PHE SEQRES 2 C 244 LYS TRP VAL ARG ASN LYS ILE ASP ILE ALA GLU GLY PRO SEQRES 3 C 244 GLY ALA MET ASN ILE ALA ASN VAL LEU SER THR THR GLY SEQRES 4 C 244 GLY GLN THR ILE ALA LEU VAL GLY GLU ARG ALA PHE TYR SEQRES 5 C 244 ASP PRO ARG THR ALA GLY ALA ALA VAL ARG CYS LYS ASP SEQRES 6 C 244 LEU MET GLU ILE ALA ARG MET PRO SER VAL PHE LEU GLY SEQRES 7 C 244 GLU SER THR GLU PRO ASP GLY ARG ARG GLY TYR PHE THR SEQRES 8 C 244 TRP SER HIS THR ILE SER PRO VAL ASN TRP VAL PHE ASP SEQRES 9 C 244 ASP HIS ILE TYR LEU GLU ASN MET PRO ASN LEU ARG LEU SEQRES 10 C 244 PHE SER SER CYS TYR ASN TYR TRP ARG GLY SER PHE VAL SEQRES 11 C 244 ILE LYS LEU THR VAL TYR ALA SER THR PHE ASN LYS GLY SEQRES 12 C 244 ARG LEU ARG MET ALA PHE PHE PRO ASN ARG GLU GLY ALA SEQRES 13 C 244 TYR THR GLN ASP ASP ALA GLN ASN ALA ILE PHE VAL VAL SEQRES 14 C 244 CYS ASP ILE GLY LEU ASN ASN THR PHE GLU MET THR ILE SEQRES 15 C 244 PRO TYR THR TRP GLY ASN TRP MET ARG PRO THR ARG GLY SEQRES 16 C 244 ASN SER LEU GLY HIS LEU ARG ILE ASP VAL LEU ASN ARG SEQRES 17 C 244 LEU THR TYR ASN SER SER SER PRO ASN ALA VAL ASN CYS SEQRES 18 C 244 ILE LEU GLN ILE LYS MET GLY ASP ASP ALA MET PHE MET SEQRES 19 C 244 VAL PRO THR THR SER ASN LEU VAL MET GLN HELIX 1 1 GLU A 39 GLU A 43 5 5 HELIX 2 2 SER A 56 MET A 61 1 6 HELIX 3 3 LYS A 83 PHE A 88 1 6 HELIX 4 4 THR A 115 ARG A 121 5 7 HELIX 5 5 LEU A 163 GLY A 167 5 5 HELIX 6 6 THR B 79 ASN B 84 1 6 HELIX 7 7 PRO B 85 LYS B 87 5 3 HELIX 8 8 PRO B 159 ASP B 164 1 6 HELIX 9 9 THR B 170 LEU B 177 5 8 HELIX 10 10 THR C 10 LYS C 14 5 5 HELIX 11 11 ASN C 33 GLY C 39 1 7 HELIX 12 12 ALA C 44 GLU C 48 5 5 HELIX 13 13 ASP C 53 ALA C 57 5 5 HELIX 14 14 LEU C 66 ARG C 71 1 6 HELIX 15 15 MET C 112 CYS C 121 1 10 SHEET 1 A 4 TRP A 92 THR A 99 0 SHEET 2 A 4 ASN A 216 PHE A 224 -1 O ASN A 216 N THR A 99 SHEET 3 A 4 LEU A 130 SER A 138 -1 N ASN A 131 O SER A 223 SHEET 4 A 4 GLN A 176 MET A 177 -1 O MET A 177 N ILE A 134 SHEET 1 B 4 TRP A 92 THR A 99 0 SHEET 2 B 4 ASN A 216 PHE A 224 -1 O ASN A 216 N THR A 99 SHEET 3 B 4 LEU A 130 SER A 138 -1 N ASN A 131 O SER A 223 SHEET 4 B 4 CYS A 180 VAL A 181 -1 O VAL A 181 N LEU A 130 SHEET 1 C 4 GLN A 105 LEU A 109 0 SHEET 2 C 4 GLY A 203 VAL A 210 -1 O THR A 207 N GLN A 105 SHEET 3 C 4 PHE A 143 THR A 149 -1 N ALA A 147 O PHE A 206 SHEET 4 C 4 MET A 169 ILE A 171 -1 O ILE A 171 N LEU A 144 SHEET 1 D 3 ARG A 190 CYS A 191 0 SHEET 2 D 3 PHE A 123 THR A 127 -1 N TRP A 126 O ARG A 190 SHEET 3 D 3 ASN A 228 PRO A 232 -1 O PHE A 230 N HIS A 125 SHEET 1 E 2 ALA B 40 THR B 44 0 SHEET 2 E 2 ALA B 47 VAL B 51 -1 O ASN B 49 N SER B 42 SHEET 1 F 4 HIS B 90 TRP B 96 0 SHEET 2 F 4 VAL B 231 LEU B 240 -1 O VAL B 233 N GLY B 94 SHEET 3 F 4 GLY B 136 LEU B 143 -1 N GLN B 140 O PHE B 236 SHEET 4 F 4 GLN B 189 ILE B 194 -1 O ALA B 190 N VAL B 141 SHEET 1 G 4 LEU B 105 SER B 108 0 SHEET 2 G 4 TYR B 214 THR B 222 -1 O ILE B 215 N VAL B 106 SHEET 3 G 4 ALA B 150 ALA B 155 -1 N ILE B 154 O TRP B 216 SHEET 4 G 4 VAL B 180 ASN B 183 -1 O VAL B 180 N ALA B 155 SHEET 1 H 3 ALA B 203 ARG B 204 0 SHEET 2 H 3 PHE B 130 VAL B 133 -1 N VAL B 133 O ALA B 203 SHEET 3 H 3 GLN B 245 PRO B 247 -1 O CYS B 246 N ALA B 131 SHEET 1 I 4 TYR C 89 TRP C 92 0 SHEET 2 I 4 VAL C 219 MET C 227 -1 O CYS C 221 N PHE C 90 SHEET 3 I 4 PHE C 129 VAL C 135 -1 N LYS C 132 O GLN C 224 SHEET 4 I 4 PHE C 178 ILE C 182 -1 O ILE C 182 N PHE C 129 SHEET 1 J 4 TRP C 101 ASP C 105 0 SHEET 2 J 4 LEU C 201 THR C 210 -1 O ILE C 203 N VAL C 102 SHEET 3 J 4 LYS C 142 PHE C 149 -1 N ALA C 148 O ARG C 202 SHEET 4 J 4 ILE C 166 ASP C 171 -1 O ILE C 166 N PHE C 149 SHEET 1 K 3 ARG C 191 PRO C 192 0 SHEET 2 K 3 TYR C 122 TRP C 125 -1 N TRP C 125 O ARG C 191 SHEET 3 K 3 PHE C 233 PRO C 236 -1 O MET C 234 N TYR C 124 SSBOND 1 CYS A 124 CYS A 191 1555 1555 2.04 CISPEP 1 GLY A 37 GLU A 38 0 -2.57 CISPEP 2 ASP B 70 PHE B 71 0 4.48 CISPEP 3 SER B 225 GLY B 226 0 -7.16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000