HEADER STRUCTURAL PROTEIN 02-SEP-15 3JBI TITLE MDFF MODEL OF THE VINCULIN TAIL DOMAIN BOUND TO F-ACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VINCULIN; COMPND 7 CHAIN: V; COMPND 8 FRAGMENT: TAIL DOMAIN (UNP RESIDUES 879-1130); COMPND 9 SYNONYM: VT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 8 ORGANISM_COMMON: CHICKEN; SOURCE 9 ORGANISM_TAXID: 9031; SOURCE 10 ORGANELLE: FOCAL ADHESION; SOURCE 11 GENE: VCL, VINC1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYTOSKELETON, ADHESION, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.Y.KIM,P.M.THOMPSON,H.T.LEE,M.PERSHAD,S.L.CAMPBELL,G.M.ALUSHIN REVDAT 4 21-FEB-24 3JBI 1 REMARK SEQADV LINK REVDAT 3 18-JUL-18 3JBI 1 REMARK REVDAT 2 17-FEB-16 3JBI 1 JRNL REVDAT 1 04-NOV-15 3JBI 0 JRNL AUTH L.Y.KIM,P.M.THOMPSON,H.T.LEE,M.PERSHAD,S.L.CAMPBELL, JRNL AUTH 2 G.M.ALUSHIN JRNL TITL THE STRUCTURAL BASIS OF ACTIN ORGANIZATION BY VINCULIN AND JRNL TITL 2 METAVINCULIN. JRNL REF J.MOL.BIOL. V. 428 10 2016 JRNL REFN ISSN 0022-2836 JRNL PMID 26493222 JRNL DOI 10.1016/J.JMB.2015.09.031 REMARK 2 REMARK 2 RESOLUTION. 8.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, MDFF, UCSF CHIMERA, EMAN, REMARK 3 FREALIGN, SPARX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1QKR REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE DETAILS- REMARK 3 -COMPONENTS WERE INITIALLY RIGID BODY FIT USING CHIMERA, REMARK 3 FOLLOWED BY FLEXIBLE FITTING WITH MDFF. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.180 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 8.500 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: CATALASE CRYSTAL REMARK 3 REMARK 3 OTHER DETAILS: (HELICAL DETAILS: SINGLE MODEL IHRSR WAS PERFORMED REMARK 3 WITH EMAN2 / SPARX AND FINAL RECONSTRUCTION WITH FREALIGN (FIXED REMARK 3 HELICAL PARAMETERS).) REMARK 4 REMARK 4 3JBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000160492. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : VINCULIN TAIL DOMAIN BOUND TO F REMARK 245 -ACTIN; SKELETAL MUSCLE ACTIN; REMARK 245 VINCULIN TAIL DOMAIN, RESIDUES REMARK 245 879-1061 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.01 REMARK 245 SAMPLE SUPPORT DETAILS : 200 MESH 1.2 / 1.3 C-FLAT REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 MICROLITERS OF 0.3 MICROMOLAR REMARK 245 ACTIN WAS APPLIED TO THE GRID REMARK 245 AND INCUBATED FOR 60 SECONDS AT REMARK 245 25 DEGREES C. 3 MICROLITERS OF REMARK 245 10 MICROMOLAR VT WAS THEN REMARK 245 APPLIED AND INCUBATED FOR 60 REMARK 245 SECONDS. 3 MICROLITERS OF REMARK 245 SOLUTION WAS REMOVED, THEN AN REMARK 245 ADDITIONAL 3 MICROLITERS OF VT REMARK 245 APPLIED. AFTER 60 SECONDS, 3 REMARK 245 MICROLITERS OF SOLUTION WAS REMARK 245 REMOVED, THEN THE GRID WAS REMARK 245 BLOTTED FOR 2 SECONDS BEFORE REMARK 245 PLUNGING INTO LIQUID ETHANE REMARK 245 (LEICA EM GP). REMARK 245 SAMPLE BUFFER : 50 MM KCL, 1 MM MGCL2, 1 MM REMARK 245 EGTA, 10 MM IMIDAZOLE REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 22-MAY-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 100000 REMARK 245 CALIBRATED MAGNIFICATION : 137615 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 120 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = -166.82 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 27.80 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 372 REMARK 465 LYS A 373 REMARK 465 CYS A 374 REMARK 465 PHE A 375 REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 372 REMARK 465 LYS B 373 REMARK 465 CYS B 374 REMARK 465 PHE B 375 REMARK 465 GLY V 808 REMARK 465 SER V 809 REMARK 465 GLU V 810 REMARK 465 GLU V 811 REMARK 465 LYS V 812 REMARK 465 ASP V 813 REMARK 465 GLU V 814 REMARK 465 GLU V 815 REMARK 465 PHE V 816 REMARK 465 PRO V 817 REMARK 465 GLU V 818 REMARK 465 GLN V 819 REMARK 465 LYS V 820 REMARK 465 ALA V 821 REMARK 465 GLY V 822 REMARK 465 GLU V 823 REMARK 465 ALA V 824 REMARK 465 ILE V 825 REMARK 465 ASN V 826 REMARK 465 GLN V 827 REMARK 465 PRO V 828 REMARK 465 MET V 829 REMARK 465 MET V 830 REMARK 465 MET V 831 REMARK 465 ALA V 832 REMARK 465 ALA V 833 REMARK 465 ARG V 834 REMARK 465 GLN V 835 REMARK 465 LEU V 836 REMARK 465 HIS V 837 REMARK 465 ASP V 838 REMARK 465 GLU V 839 REMARK 465 ALA V 840 REMARK 465 ARG V 841 REMARK 465 LYS V 842 REMARK 465 TRP V 843 REMARK 465 SER V 844 REMARK 465 SER V 845 REMARK 465 LYS V 846 REMARK 465 PRO V 847 REMARK 465 VAL V 848 REMARK 465 THR V 849 REMARK 465 VAL V 850 REMARK 465 ILE V 851 REMARK 465 ASN V 852 REMARK 465 GLU V 853 REMARK 465 ALA V 854 REMARK 465 ALA V 855 REMARK 465 GLU V 856 REMARK 465 ALA V 857 REMARK 465 GLY V 858 REMARK 465 VAL V 859 REMARK 465 ASP V 860 REMARK 465 ILE V 861 REMARK 465 ASP V 862 REMARK 465 GLU V 863 REMARK 465 GLU V 864 REMARK 465 ASP V 865 REMARK 465 ASP V 866 REMARK 465 ALA V 867 REMARK 465 ASP V 868 REMARK 465 VAL V 869 REMARK 465 GLU V 870 REMARK 465 PHE V 871 REMARK 465 SER V 872 REMARK 465 LEU V 873 REMARK 465 PRO V 874 REMARK 465 SER V 875 REMARK 465 ASP V 876 REMARK 465 ILE V 877 REMARK 465 GLU V 878 REMARK 465 ASP V 879 REMARK 465 ASP V 880 REMARK 465 TYR V 881 REMARK 465 GLU V 882 REMARK 465 PRO V 883 REMARK 465 GLU V 884 REMARK 465 LEU V 885 REMARK 465 LEU V 886 REMARK 465 LEU V 887 REMARK 465 MET V 888 REMARK 465 PRO V 889 REMARK 465 THR V 890 REMARK 465 ASN V 891 REMARK 465 GLN V 892 REMARK 465 PRO V 893 REMARK 465 VAL V 894 REMARK 465 ASN V 895 REMARK 465 GLN V 896 REMARK 465 PRO V 897 REMARK 465 ILE V 898 REMARK 465 LEU V 899 REMARK 465 ALA V 900 REMARK 465 ALA V 901 REMARK 465 ALA V 902 REMARK 465 GLN V 903 REMARK 465 SER V 904 REMARK 465 LEU V 905 REMARK 465 HIS V 906 REMARK 465 ARG V 907 REMARK 465 GLU V 908 REMARK 465 ALA V 909 REMARK 465 THR V 910 REMARK 465 LYS V 911 REMARK 465 TRP V 912 REMARK 465 SER V 913 REMARK 465 SER V 914 REMARK 465 LYS V 915 REMARK 465 GLY V 916 REMARK 465 ILE V 1048 REMARK 465 ARG V 1049 REMARK 465 THR V 1050 REMARK 465 ASP V 1051 REMARK 465 ALA V 1052 REMARK 465 GLY V 1053 REMARK 465 PHE V 1054 REMARK 465 THR V 1055 REMARK 465 LEU V 1056 REMARK 465 ARG V 1057 REMARK 465 TRP V 1058 REMARK 465 VAL V 1059 REMARK 465 ARG V 1060 REMARK 465 LYS V 1061 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 147 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 39 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 MET B 119 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 196 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 196 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG V 935 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG V 963 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG V 978 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG V1039 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 16 54.63 88.48 REMARK 500 ASP A 25 -87.14 -101.01 REMARK 500 SER A 33 -76.78 87.17 REMARK 500 ILE A 34 128.97 16.25 REMARK 500 GLU A 93 -78.17 -118.59 REMARK 500 LEU A 180 -76.17 -48.99 REMARK 500 SER A 199 76.08 -108.88 REMARK 500 PHE A 200 52.34 -93.01 REMARK 500 SER A 234 126.98 -39.79 REMARK 500 PRO A 243 3.40 -68.18 REMARK 500 MET A 269 125.68 -24.24 REMARK 500 MET A 283 20.51 -77.36 REMARK 500 ALA A 295 10.91 90.02 REMARK 500 THR A 304 -3.24 -56.62 REMARK 500 THR A 324 -10.77 71.01 REMARK 500 LEU A 349 98.93 -60.27 REMARK 500 PHE A 352 3.96 -64.12 REMARK 500 LEU B 16 59.44 83.26 REMARK 500 ASP B 25 -61.16 -137.35 REMARK 500 SER B 33 -58.24 87.06 REMARK 500 ILE B 34 125.29 -11.61 REMARK 500 VAL B 45 115.64 72.60 REMARK 500 ILE B 76 106.24 -57.80 REMARK 500 GLU B 93 -78.90 -120.20 REMARK 500 ARG B 95 57.93 73.60 REMARK 500 ALA B 144 5.34 -66.34 REMARK 500 THR B 148 14.19 -145.14 REMARK 500 GLU B 167 60.57 20.78 REMARK 500 PHE B 200 28.39 -142.13 REMARK 500 ALA B 220 -149.29 -78.42 REMARK 500 SER B 234 137.78 -35.59 REMARK 500 SER B 235 99.83 -51.86 REMARK 500 SER B 271 142.18 -33.73 REMARK 500 HIS B 275 -60.14 -29.03 REMARK 500 MET B 283 21.14 -77.61 REMARK 500 ALA B 295 1.24 104.54 REMARK 500 THR B 304 3.41 -56.01 REMARK 500 PRO B 333 155.15 -42.24 REMARK 500 LEU B 349 97.80 -64.20 REMARK 500 PHE B 352 2.58 -65.13 REMARK 500 PRO B 367 47.70 -97.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 332 PRO B 333 149.56 REMARK 500 LEU B 349 SER B 350 145.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 62 0.09 SIDE CHAIN REMARK 500 ARG A 183 0.10 SIDE CHAIN REMARK 500 ARG A 206 0.10 SIDE CHAIN REMARK 500 ARG A 290 0.11 SIDE CHAIN REMARK 500 ARG A 335 0.10 SIDE CHAIN REMARK 500 ARG B 28 0.08 SIDE CHAIN REMARK 500 TYR B 69 0.07 SIDE CHAIN REMARK 500 ARG B 95 0.20 SIDE CHAIN REMARK 500 ARG B 206 0.10 SIDE CHAIN REMARK 500 ARG B 210 0.10 SIDE CHAIN REMARK 500 ARG B 290 0.12 SIDE CHAIN REMARK 500 ARG B 312 0.10 SIDE CHAIN REMARK 500 ARG V 987 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 137 OE1 REMARK 620 2 ASP A 154 OD1 95.9 REMARK 620 3 ASP A 154 OD2 90.3 67.5 REMARK 620 4 ADP A 402 O2B 95.3 99.8 166.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 137 OE1 REMARK 620 2 ASP B 154 OD1 110.9 REMARK 620 3 ASP B 154 OD2 96.0 67.6 REMARK 620 4 ADP B 402 O2B 102.9 99.0 159.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6446 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6447 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6448 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6449 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6450 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6451 RELATED DB: EMDB REMARK 900 RELATED ID: 3JBJ RELATED DB: PDB REMARK 900 RELATED ID: 3JBK RELATED DB: PDB DBREF 3JBI A 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 3JBI B 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 3JBI V 810 1061 UNP P12003 VINC_CHICK 879 1130 SEQADV 3JBI GLY V 808 UNP P12003 EXPRESSION TAG SEQADV 3JBI SER V 809 UNP P12003 EXPRESSION TAG SEQRES 1 A 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 A 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 A 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 A 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 B 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 B 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 B 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 B 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 B 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 B 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 B 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 B 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 B 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 B 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 B 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 B 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 B 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 B 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 B 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 B 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 B 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 B 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 B 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 B 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 B 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 B 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 B 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 B 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 B 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 B 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 B 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 B 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 B 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 V 254 GLY SER GLU GLU LYS ASP GLU GLU PHE PRO GLU GLN LYS SEQRES 2 V 254 ALA GLY GLU ALA ILE ASN GLN PRO MET MET MET ALA ALA SEQRES 3 V 254 ARG GLN LEU HIS ASP GLU ALA ARG LYS TRP SER SER LYS SEQRES 4 V 254 PRO VAL THR VAL ILE ASN GLU ALA ALA GLU ALA GLY VAL SEQRES 5 V 254 ASP ILE ASP GLU GLU ASP ASP ALA ASP VAL GLU PHE SER SEQRES 6 V 254 LEU PRO SER ASP ILE GLU ASP ASP TYR GLU PRO GLU LEU SEQRES 7 V 254 LEU LEU MET PRO THR ASN GLN PRO VAL ASN GLN PRO ILE SEQRES 8 V 254 LEU ALA ALA ALA GLN SER LEU HIS ARG GLU ALA THR LYS SEQRES 9 V 254 TRP SER SER LYS GLY ASN ASP ILE ILE ALA ALA ALA LYS SEQRES 10 V 254 ARG MET ALA LEU LEU MET ALA GLU MET SER ARG LEU VAL SEQRES 11 V 254 ARG GLY GLY SER GLY ASN LYS ARG ALA LEU ILE GLN CYS SEQRES 12 V 254 ALA LYS ASP ILE ALA LYS ALA SER ASP GLU VAL THR ARG SEQRES 13 V 254 LEU ALA LYS GLU VAL ALA LYS GLN CYS THR ASP LYS ARG SEQRES 14 V 254 ILE ARG THR ASN LEU LEU GLN VAL CYS GLU ARG ILE PRO SEQRES 15 V 254 THR ILE SER THR GLN LEU LYS ILE LEU SER THR VAL LYS SEQRES 16 V 254 ALA THR MET LEU GLY ARG THR ASN ILE SER ASP GLU GLU SEQRES 17 V 254 SER GLU GLN ALA THR GLU MET LEU VAL HIS ASN ALA GLN SEQRES 18 V 254 ASN LEU MET GLN SER VAL LYS GLU THR VAL ARG GLU ALA SEQRES 19 V 254 GLU ALA ALA SER ILE LYS ILE ARG THR ASP ALA GLY PHE SEQRES 20 V 254 THR LEU ARG TRP VAL ARG LYS HET MG A 401 1 HET ADP A 402 27 HET MG B 401 1 HET ADP B 402 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 MG 2(MG 2+) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) HELIX 1 1 ASP A 56 LYS A 61 1 6 HELIX 2 2 ASN A 78 GLU A 93 1 16 HELIX 3 3 ALA A 114 ASN A 128 1 15 HELIX 4 4 GLN A 137 GLY A 146 1 10 HELIX 5 5 PRO A 172 ILE A 175 5 4 HELIX 6 6 GLY A 182 GLU A 195 1 14 HELIX 7 7 THR A 202 LEU A 216 1 15 HELIX 8 8 ASP A 222 SER A 232 1 11 HELIX 9 9 GLY A 251 THR A 260 1 10 HELIX 10 10 LEU A 261 PHE A 262 5 2 HELIX 11 11 GLN A 263 ILE A 267 5 5 HELIX 12 12 GLY A 273 MET A 283 1 11 HELIX 13 13 ASP A 286 TYR A 294 1 9 HELIX 14 14 GLY A 301 MET A 305 5 5 HELIX 15 15 ALA A 310 ALA A 321 1 12 HELIX 16 16 GLU A 334 LYS A 336 5 3 HELIX 17 17 TYR A 337 LEU A 349 1 13 HELIX 18 18 THR A 351 TRP A 356 5 6 HELIX 19 19 LYS A 359 GLY A 366 1 8 HELIX 20 20 PRO A 367 HIS A 371 5 5 HELIX 21 21 ASP B 56 LYS B 61 1 6 HELIX 22 22 ASN B 78 GLU B 93 1 16 HELIX 23 23 ALA B 114 ASN B 128 1 15 HELIX 24 24 GLN B 137 ALA B 144 1 8 HELIX 25 25 PRO B 172 ILE B 175 5 4 HELIX 26 26 GLY B 182 THR B 194 1 13 HELIX 27 27 GLU B 195 GLY B 197 5 3 HELIX 28 28 THR B 202 LEU B 216 1 15 HELIX 29 29 ASP B 222 SER B 232 1 11 HELIX 30 30 GLY B 251 THR B 260 1 10 HELIX 31 31 GLY B 273 MET B 283 1 11 HELIX 32 32 ASP B 286 TYR B 294 1 9 HELIX 33 33 GLY B 301 MET B 305 5 5 HELIX 34 34 ALA B 310 ALA B 321 1 12 HELIX 35 35 GLU B 334 LEU B 349 1 16 HELIX 36 36 THR B 351 TRP B 356 5 6 HELIX 37 37 LYS B 359 GLY B 366 1 8 HELIX 38 38 ASP V 918 GLY V 939 1 22 HELIX 39 39 GLY V 940 GLY V 942 5 3 HELIX 40 40 ASN V 943 CYS V 972 1 30 HELIX 41 41 ASP V 974 GLU V 986 1 13 HELIX 42 42 GLU V 986 LEU V 1006 1 21 HELIX 43 43 SER V 1012 SER V 1045 1 34 SHEET 1 A 6 ALA A 29 PHE A 31 0 SHEET 2 A 6 VAL A 17 PHE A 21 -1 N ALA A 19 O ALA A 29 SHEET 3 A 6 LEU A 8 ASP A 11 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 THR A 103 GLU A 107 1 O LEU A 104 N CYS A 10 SHEET 5 A 6 ALA A 131 ILE A 136 1 O ALA A 135 N GLU A 107 SHEET 6 A 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 ARG A 37 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 THR A 66 LYS A 68 -1 O LYS A 68 N VAL A 35 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 VAL A 159 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 MET A 176 LEU A 178 -1 O MET A 176 N ASN A 162 SHEET 1 E 5 TYR A 169 ALA A 170 0 SHEET 2 E 5 VAL A 159 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 5 GLY A 150 GLY A 156 -1 N VAL A 152 O VAL A 163 SHEET 4 E 5 ASN A 297 SER A 300 1 O VAL A 298 N LEU A 153 SHEET 5 E 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 G 5 ALA B 29 PHE B 31 0 SHEET 2 G 5 VAL B 17 PHE B 21 -1 N ALA B 19 O ALA B 29 SHEET 3 G 5 LEU B 8 ASP B 11 -1 N ASP B 11 O LYS B 18 SHEET 4 G 5 THR B 103 GLU B 107 1 O LEU B 104 N CYS B 10 SHEET 5 G 5 VAL B 134 ILE B 136 1 O ALA B 135 N GLU B 107 SHEET 1 H 3 TYR B 53 VAL B 54 0 SHEET 2 H 3 VAL B 35 PRO B 38 -1 N GLY B 36 O TYR B 53 SHEET 3 H 3 LEU B 65 LYS B 68 -1 O LYS B 68 N VAL B 35 SHEET 1 I 2 ILE B 71 GLU B 72 0 SHEET 2 I 2 ILE B 75 ILE B 76 -1 O ILE B 75 N GLU B 72 SHEET 1 J 2 ALA B 131 MET B 132 0 SHEET 2 J 2 ILE B 357 THR B 358 -1 O ILE B 357 N MET B 132 SHEET 1 K 3 TYR B 169 ALA B 170 0 SHEET 2 K 3 VAL B 159 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 K 3 MET B 176 LEU B 178 -1 O MET B 176 N ASN B 162 SHEET 1 L 4 TYR B 169 ALA B 170 0 SHEET 2 L 4 VAL B 159 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 L 4 THR B 149 GLY B 156 -1 N VAL B 152 O VAL B 163 SHEET 4 L 4 ASN B 297 SER B 300 1 O VAL B 298 N LEU B 153 SHEET 1 M 2 LYS B 238 GLU B 241 0 SHEET 2 M 2 VAL B 247 ILE B 250 -1 O ILE B 248 N TYR B 240 LINK OE1 GLN A 137 MG MG A 401 1555 1555 1.94 LINK OD1 ASP A 154 MG MG A 401 1555 1555 1.88 LINK OD2 ASP A 154 MG MG A 401 1555 1555 1.91 LINK MG MG A 401 O2B ADP A 402 1555 1555 1.74 LINK OE1 GLN B 137 MG MG B 401 1555 1555 1.87 LINK OD1 ASP B 154 MG MG B 401 1555 1555 1.87 LINK OD2 ASP B 154 MG MG B 401 1555 1555 1.89 LINK MG MG B 401 O2B ADP B 402 1555 1555 1.72 CISPEP 1 GLY A 15 LEU A 16 0 13.01 CISPEP 2 GLY A 23 ASP A 24 0 2.02 CISPEP 3 GLY A 46 MET A 47 0 -4.91 CISPEP 4 GLY A 55 ASP A 56 0 4.68 CISPEP 5 LYS A 113 ALA A 114 0 18.26 CISPEP 6 ASP A 157 GLY A 158 0 -7.15 CISPEP 7 GLU A 167 GLY A 168 0 -6.79 CISPEP 8 ALA A 181 GLY A 182 0 4.39 CISPEP 9 ILE A 309 ALA A 310 0 14.32 CISPEP 10 SER A 350 THR A 351 0 5.25 CISPEP 11 GLY B 15 LEU B 16 0 10.36 CISPEP 12 GLY B 23 ASP B 24 0 3.39 CISPEP 13 GLY B 46 MET B 47 0 -0.76 CISPEP 14 GLY B 55 ASP B 56 0 4.90 CISPEP 15 LYS B 113 ALA B 114 0 16.61 CISPEP 16 ASP B 157 GLY B 158 0 -5.37 CISPEP 17 GLU B 167 GLY B 168 0 -6.46 CISPEP 18 ALA B 181 GLY B 182 0 11.37 CISPEP 19 ILE B 309 ALA B 310 0 5.53 CISPEP 20 SER B 350 THR B 351 0 5.04 SITE 1 AC1 3 GLN A 137 ASP A 154 ADP A 402 SITE 1 AC2 17 GLY A 13 SER A 14 LEU A 16 LYS A 18 SITE 2 AC2 17 GLN A 137 ASP A 154 GLY A 156 ASP A 157 SITE 3 AC2 17 ARG A 210 GLU A 214 GLY A 301 GLY A 302 SITE 4 AC2 17 THR A 303 MET A 305 TYR A 306 LYS A 336 SITE 5 AC2 17 MG A 401 SITE 1 AC3 3 GLN B 137 ASP B 154 ADP B 402 SITE 1 AC4 18 GLY B 13 SER B 14 GLY B 15 LEU B 16 SITE 2 AC4 18 LYS B 18 GLN B 137 ASP B 154 GLY B 156 SITE 3 AC4 18 ASP B 157 ARG B 210 GLU B 214 GLY B 301 SITE 4 AC4 18 GLY B 302 THR B 303 MET B 305 TYR B 306 SITE 5 AC4 18 LYS B 336 MG B 401 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000