HEADER STRUCTURAL PROTEIN 03-SEP-15 3JBK TITLE CRYO-EM RECONSTRUCTION OF THE METAVINCULIN-ACTIN INTERFACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: METAVINCULIN; COMPND 7 CHAIN: M; COMPND 8 FRAGMENT: TAIL DOMAIN (UNP RESIDUES 858-1129); COMPND 9 SYNONYM: MVT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 ORGANELLE: FOCAL ADHESION; SOURCE 11 GENE: VCL; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: 2HR-T KEYWDS ACTIN, METAVINCULIN, VINCULIN, CELL MIGRATION, ADHESION, KEYWDS 2 MECHANOSENSATION, CYTOSKELETON, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.Y.KIM,P.M.THOMPSON,H.T.LEE,M.PERSHAD,S.L.CAMPBELL,G.M.ALUSHIN REVDAT 4 21-FEB-24 3JBK 1 REMARK SEQADV LINK REVDAT 3 18-JUL-18 3JBK 1 REMARK REVDAT 2 17-FEB-16 3JBK 1 JRNL REVDAT 1 04-NOV-15 3JBK 0 JRNL AUTH L.Y.KIM,P.M.THOMPSON,H.T.LEE,M.PERSHAD,S.L.CAMPBELL, JRNL AUTH 2 G.M.ALUSHIN JRNL TITL THE STRUCTURAL BASIS OF ACTIN ORGANIZATION BY VINCULIN AND JRNL TITL 2 METAVINCULIN. JRNL REF J.MOL.BIOL. V. 428 10 2016 JRNL REFN ISSN 0022-2836 JRNL PMID 26493222 JRNL DOI 10.1016/J.JMB.2015.09.031 REMARK 2 REMARK 2 RESOLUTION. 8.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, MDFF, UCSF CHIMERA, EMAN, REMARK 3 FREALIGN, SPARX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1QKR REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE DETAILS- REMARK 3 -COMPONENTS WERE INITIALLY RIGID BODY FIT USING CHIMERA, REMARK 3 FOLLOWED BY FLEXIBLE FITTING WITH MDFF. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.180 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 8.200 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (HELICAL DETAILS: MULTI-MODEL IHRSR WAS PERFORMED REMARK 3 USING EMAN2 / SPARX TO SELECT FOR BOUND SEGMENTS, FOLLOWED BY REMARK 3 SINGLE MODEL IHRSR WITH EMAN2 / SPARX AND FINAL RECONSTRUCTION REMARK 3 WITH FREALIGN (FIXED HELICAL PARAMETERS).) REMARK 4 REMARK 4 3JBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000160494. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : METAVINCULIN TAIL DOMAIN BOUND REMARK 245 TO F-ACTIN; SKELETAL MUSCLE REMARK 245 ACTIN; METAVINCULIN TAIL DOMAIN REMARK 245 RESIDUES 858-1129 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.01 REMARK 245 SAMPLE SUPPORT DETAILS : 200 MESH 1.2 / 1.3 C-FLAT REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 MICROLITERS OF 0.3 MICROMOLAR REMARK 245 ACTIN WAS APPLIED TO THE GRID REMARK 245 AND INCUBATED FOR 60 SECONDS AT REMARK 245 25 DEGREES C. 3 MICROLITERS OF REMARK 245 10 MICROMOLAR MVT WAS THEN REMARK 245 APPLIED AND INCUBATED FOR 60 REMARK 245 SECONDS. 3 MICROLITERS OF REMARK 245 SOLUTION WAS REMOVED, THEN AN REMARK 245 ADDITIONAL 3 MICROLITERS OF MVT REMARK 245 APPLIED. AFTER 60 SECONDS, 3 REMARK 245 MICROLITERS OF SOLUTION WAS REMARK 245 REMOVED, THEN THE GRID WAS REMARK 245 BLOTTED FOR 2 SECONDS BEFORE REMARK 245 PLUNGING INTO LIQUID ETHANE REMARK 245 (LEICA EM GP). REMARK 245 SAMPLE BUFFER : 50 MM KCL, 1 MM MGCL2, 1 MM REMARK 245 EGTA, 10 MM IMIDAZOLE REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : ONE METAVINCULIN TAIL DOMAIN REMARK 245 PER ACTIN PROTOMER REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 10-OCT-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI 20 REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 100000 REMARK 245 CALIBRATED MAGNIFICATION : 137615 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 120 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = -166.75 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 27.80 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 372 REMARK 465 LYS A 373 REMARK 465 CYS A 374 REMARK 465 PHE A 375 REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 372 REMARK 465 LYS B 373 REMARK 465 CYS B 374 REMARK 465 PHE B 375 REMARK 465 SER M 789 REMARK 465 LEU M 790 REMARK 465 ALA M 791 REMARK 465 PRO M 792 REMARK 465 PRO M 793 REMARK 465 LYS M 794 REMARK 465 PRO M 795 REMARK 465 PRO M 796 REMARK 465 LEU M 797 REMARK 465 PRO M 798 REMARK 465 GLU M 799 REMARK 465 GLY M 800 REMARK 465 GLU M 801 REMARK 465 VAL M 802 REMARK 465 PRO M 803 REMARK 465 PRO M 804 REMARK 465 PRO M 805 REMARK 465 ARG M 806 REMARK 465 PRO M 807 REMARK 465 PRO M 808 REMARK 465 PRO M 809 REMARK 465 PRO M 810 REMARK 465 GLU M 811 REMARK 465 GLU M 812 REMARK 465 LYS M 813 REMARK 465 ASP M 814 REMARK 465 GLU M 815 REMARK 465 GLU M 816 REMARK 465 PHE M 817 REMARK 465 PRO M 818 REMARK 465 GLU M 819 REMARK 465 GLN M 820 REMARK 465 LYS M 821 REMARK 465 ALA M 822 REMARK 465 GLY M 823 REMARK 465 GLU M 824 REMARK 465 VAL M 825 REMARK 465 ILE M 826 REMARK 465 ASN M 827 REMARK 465 GLN M 828 REMARK 465 PRO M 829 REMARK 465 MET M 830 REMARK 465 MET M 831 REMARK 465 MET M 832 REMARK 465 ALA M 833 REMARK 465 ALA M 834 REMARK 465 ARG M 835 REMARK 465 GLN M 836 REMARK 465 LEU M 837 REMARK 465 HIS M 838 REMARK 465 ASP M 839 REMARK 465 GLU M 840 REMARK 465 ALA M 841 REMARK 465 ARG M 842 REMARK 465 LYS M 843 REMARK 465 TRP M 844 REMARK 465 SER M 845 REMARK 465 SER M 846 REMARK 465 LYS M 847 REMARK 465 PRO M 848 REMARK 465 GLY M 849 REMARK 465 ILE M 850 REMARK 465 PRO M 851 REMARK 465 ALA M 852 REMARK 465 ALA M 853 REMARK 465 GLU M 854 REMARK 465 VAL M 855 REMARK 465 GLY M 856 REMARK 465 ILE M 857 REMARK 465 GLY M 858 REMARK 465 VAL M 859 REMARK 465 VAL M 860 REMARK 465 ALA M 861 REMARK 465 GLU M 862 REMARK 465 ALA M 863 REMARK 465 ASP M 864 REMARK 465 ALA M 865 REMARK 465 ALA M 866 REMARK 465 ASP M 867 REMARK 465 ALA M 868 REMARK 465 ALA M 869 REMARK 465 GLY M 870 REMARK 465 PHE M 871 REMARK 465 PRO M 872 REMARK 465 VAL M 873 REMARK 465 PRO M 874 REMARK 465 PRO M 875 REMARK 465 ASP M 876 REMARK 465 MET M 877 REMARK 465 GLU M 878 REMARK 465 ASP M 879 REMARK 465 ASP M 880 REMARK 465 TYR M 881 REMARK 465 GLU M 882 REMARK 465 PRO M 883 REMARK 465 GLU M 884 REMARK 465 LEU M 885 REMARK 465 LEU M 886 REMARK 465 LEU M 887 REMARK 465 MET M 888 REMARK 465 PRO M 889 REMARK 465 SER M 890 REMARK 465 ASN M 891 REMARK 465 GLN M 892 REMARK 465 PRO M 893 REMARK 465 VAL M 894 REMARK 465 ASN M 895 REMARK 465 GLN M 896 REMARK 465 PRO M 897 REMARK 465 ILE M 898 REMARK 465 LEU M 899 REMARK 465 ALA M 900 REMARK 465 ALA M 901 REMARK 465 ALA M 902 REMARK 465 GLN M 903 REMARK 465 SER M 904 REMARK 465 LEU M 905 REMARK 465 HIS M 906 REMARK 465 ARG M 907 REMARK 465 GLU M 908 REMARK 465 ALA M 909 REMARK 465 THR M 910 REMARK 465 LYS M 911 REMARK 465 TRP M 912 REMARK 465 SER M 913 REMARK 465 SER M 914 REMARK 465 LYS M 915 REMARK 465 GLY M 916 REMARK 465 ILE M 1048 REMARK 465 ARG M 1049 REMARK 465 THR M 1050 REMARK 465 ASP M 1051 REMARK 465 ALA M 1052 REMARK 465 GLY M 1053 REMARK 465 PHE M 1054 REMARK 465 THR M 1055 REMARK 465 LEU M 1056 REMARK 465 ARG M 1057 REMARK 465 TRP M 1058 REMARK 465 VAL M 1059 REMARK 465 ARG M 1060 REMARK 465 LYS M 1061 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 91 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 154 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 335 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR B 53 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR B 53 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 62 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 154 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 PHE B 266 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 290 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG M 935 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG M 945 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG M 963 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG M1008 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 16 59.61 88.19 REMARK 500 ASP A 25 -85.67 -103.58 REMARK 500 SER A 33 -13.19 73.75 REMARK 500 VAL A 45 134.19 98.17 REMARK 500 GLU A 93 -79.01 -118.74 REMARK 500 ARG A 95 57.15 73.77 REMARK 500 VAL A 129 137.86 -33.71 REMARK 500 GLU A 167 102.52 -30.23 REMARK 500 ALA A 174 25.09 -151.22 REMARK 500 PHE A 200 58.28 -146.14 REMARK 500 SER A 271 125.91 -35.92 REMARK 500 MET A 283 20.38 -78.63 REMARK 500 ALA A 295 19.86 83.14 REMARK 500 PHE A 352 5.43 -62.35 REMARK 500 LEU B 16 59.98 87.47 REMARK 500 ALA B 22 108.84 -57.83 REMARK 500 ASP B 25 -78.52 -130.81 REMARK 500 PRO B 32 43.35 -87.18 REMARK 500 SER B 33 -25.38 62.35 REMARK 500 VAL B 45 -19.83 64.60 REMARK 500 GLU B 93 -78.72 -119.94 REMARK 500 ARG B 95 50.67 70.02 REMARK 500 GLU B 167 72.44 14.51 REMARK 500 MET B 283 20.12 -78.62 REMARK 500 ALA B 295 -1.91 76.38 REMARK 500 ASN B 297 106.03 -52.32 REMARK 500 PHE B 352 2.50 -63.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 206 0.09 SIDE CHAIN REMARK 500 ARG A 256 0.08 SIDE CHAIN REMARK 500 ARG A 290 0.12 SIDE CHAIN REMARK 500 ARG A 312 0.16 SIDE CHAIN REMARK 500 ARG B 28 0.09 SIDE CHAIN REMARK 500 ARG B 39 0.13 SIDE CHAIN REMARK 500 ARG B 62 0.08 SIDE CHAIN REMARK 500 ARG B 183 0.13 SIDE CHAIN REMARK 500 ARG B 210 0.11 SIDE CHAIN REMARK 500 ARG B 254 0.09 SIDE CHAIN REMARK 500 ARG B 256 0.10 SIDE CHAIN REMARK 500 ARG B 290 0.11 SIDE CHAIN REMARK 500 ARG B 335 0.13 SIDE CHAIN REMARK 500 ARG M 925 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 137 OE1 REMARK 620 2 ASP A 154 OD2 99.8 REMARK 620 3 ASP A 154 OD1 90.6 67.8 REMARK 620 4 ADP A 402 O3B 118.3 140.9 101.5 REMARK 620 5 ADP A 402 O2B 96.2 111.2 173.2 75.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 137 OE1 REMARK 620 2 ASP B 154 OD2 94.3 REMARK 620 3 ASP B 154 OD1 96.8 67.8 REMARK 620 4 ADP B 402 O3B 108.8 155.5 100.4 REMARK 620 5 ADP B 402 O2B 102.9 108.7 160.2 74.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6447 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6446 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6448 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6449 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6450 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6451 RELATED DB: EMDB REMARK 900 RELATED ID: 3JBI RELATED DB: PDB REMARK 900 RELATED ID: 3JBJ RELATED DB: PDB DBREF 3JBK A 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 3JBK B 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 3JBK M 790 1061 UNP P18206 VINC_HUMAN 858 1129 SEQADV 3JBK SER M 789 UNP P18206 EXPRESSION TAG SEQRES 1 A 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 A 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 A 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 A 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 B 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 B 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 B 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 B 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 B 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 B 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 B 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 B 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 B 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 B 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 B 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 B 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 B 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 B 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 B 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 B 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 B 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 B 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 B 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 B 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 B 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 B 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 B 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 B 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 B 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 B 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 B 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 B 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 B 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 M 273 SER LEU ALA PRO PRO LYS PRO PRO LEU PRO GLU GLY GLU SEQRES 2 M 273 VAL PRO PRO PRO ARG PRO PRO PRO PRO GLU GLU LYS ASP SEQRES 3 M 273 GLU GLU PHE PRO GLU GLN LYS ALA GLY GLU VAL ILE ASN SEQRES 4 M 273 GLN PRO MET MET MET ALA ALA ARG GLN LEU HIS ASP GLU SEQRES 5 M 273 ALA ARG LYS TRP SER SER LYS PRO GLY ILE PRO ALA ALA SEQRES 6 M 273 GLU VAL GLY ILE GLY VAL VAL ALA GLU ALA ASP ALA ALA SEQRES 7 M 273 ASP ALA ALA GLY PHE PRO VAL PRO PRO ASP MET GLU ASP SEQRES 8 M 273 ASP TYR GLU PRO GLU LEU LEU LEU MET PRO SER ASN GLN SEQRES 9 M 273 PRO VAL ASN GLN PRO ILE LEU ALA ALA ALA GLN SER LEU SEQRES 10 M 273 HIS ARG GLU ALA THR LYS TRP SER SER LYS GLY ASN ASP SEQRES 11 M 273 ILE ILE ALA ALA ALA LYS ARG MET ALA LEU LEU MET ALA SEQRES 12 M 273 GLU MET SER ARG LEU VAL ARG GLY GLY SER GLY THR LYS SEQRES 13 M 273 ARG ALA LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS ALA SEQRES 14 M 273 SER ASP GLU VAL THR ARG LEU ALA LYS GLU VAL ALA LYS SEQRES 15 M 273 GLN CYS THR ASP LYS ARG ILE ARG THR ASN LEU LEU GLN SEQRES 16 M 273 VAL CYS GLU ARG ILE PRO THR ILE SER THR GLN LEU LYS SEQRES 17 M 273 ILE LEU SER THR VAL LYS ALA THR MET LEU GLY ARG THR SEQRES 18 M 273 ASN ILE SER ASP GLU GLU SER GLU GLN ALA THR GLU MET SEQRES 19 M 273 LEU VAL HIS ASN ALA GLN ASN LEU MET GLN SER VAL LYS SEQRES 20 M 273 GLU THR VAL ARG GLU ALA GLU ALA ALA SER ILE LYS ILE SEQRES 21 M 273 ARG THR ASP ALA GLY PHE THR LEU ARG TRP VAL ARG LYS HET MG A 401 1 HET ADP A 402 27 HET MG B 401 1 HET ADP B 402 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 MG 2(MG 2+) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) HELIX 1 1 ASP A 56 LYS A 61 1 6 HELIX 2 2 ASN A 78 GLU A 93 1 16 HELIX 3 3 ALA A 114 ASN A 128 1 15 HELIX 4 4 GLN A 137 SER A 145 1 9 HELIX 5 5 PRO A 172 ILE A 175 5 4 HELIX 6 6 GLY A 182 GLU A 195 1 14 HELIX 7 7 GLU A 205 LEU A 216 1 12 HELIX 8 8 ASP A 222 SER A 232 1 11 HELIX 9 9 GLY A 251 THR A 260 1 10 HELIX 10 10 GLY A 273 MET A 283 1 11 HELIX 11 11 ASP A 286 TYR A 294 1 9 HELIX 12 12 GLY A 301 MET A 305 5 5 HELIX 13 13 ALA A 310 ALA A 321 1 12 HELIX 14 14 GLU A 334 LYS A 336 5 3 HELIX 15 15 TYR A 337 LEU A 349 1 13 HELIX 16 16 THR A 351 TRP A 356 5 6 HELIX 17 17 LYS A 359 GLY A 366 1 8 HELIX 18 18 PRO A 367 VAL A 370 5 4 HELIX 19 19 ASP B 56 LYS B 61 1 6 HELIX 20 20 ASN B 78 GLU B 93 1 16 HELIX 21 21 ALA B 114 PHE B 127 1 14 HELIX 22 22 GLN B 137 GLY B 146 1 10 HELIX 23 23 PRO B 172 ILE B 175 5 4 HELIX 24 24 GLY B 182 THR B 194 1 13 HELIX 25 25 GLU B 195 GLY B 197 5 3 HELIX 26 26 GLU B 205 LEU B 216 1 12 HELIX 27 27 ASP B 222 SER B 232 1 11 HELIX 28 28 GLY B 251 THR B 260 1 10 HELIX 29 29 GLY B 273 MET B 283 1 11 HELIX 30 30 ASP B 286 TYR B 294 1 9 HELIX 31 31 GLY B 301 MET B 305 5 5 HELIX 32 32 ALA B 310 ALA B 321 1 12 HELIX 33 33 GLU B 334 LYS B 336 5 3 HELIX 34 34 TYR B 337 LEU B 349 1 13 HELIX 35 35 THR B 351 TRP B 356 5 6 HELIX 36 36 LYS B 359 GLY B 366 1 8 HELIX 37 37 ASP M 918 ARG M 938 1 21 HELIX 38 38 GLY M 939 GLY M 942 5 4 HELIX 39 39 THR M 943 CYS M 972 1 30 HELIX 40 40 ASP M 974 GLU M 986 1 13 HELIX 41 41 GLU M 986 LEU M 1006 1 21 HELIX 42 42 SER M 1012 SER M 1045 1 34 SHEET 1 A 6 ALA A 29 PHE A 31 0 SHEET 2 A 6 VAL A 17 PHE A 21 -1 N ALA A 19 O ALA A 29 SHEET 3 A 6 LEU A 8 ASP A 11 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 THR A 103 GLU A 107 1 O LEU A 104 N CYS A 10 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 2 VAL A 35 PRO A 38 0 SHEET 2 B 2 LEU A 65 LYS A 68 -1 O LYS A 68 N VAL A 35 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 VAL A 159 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 MET A 176 LEU A 178 -1 O MET A 176 N ASN A 162 SHEET 1 E 5 TYR A 169 ALA A 170 0 SHEET 2 E 5 VAL A 159 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 5 GLY A 150 GLY A 156 -1 N GLY A 150 O ILE A 165 SHEET 4 E 5 ASN A 297 MET A 299 1 O VAL A 298 N ILE A 151 SHEET 5 E 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 G 5 ALA B 29 PHE B 31 0 SHEET 2 G 5 VAL B 17 PHE B 21 -1 N ALA B 19 O ALA B 29 SHEET 3 G 5 LEU B 8 ASP B 11 -1 N ASP B 11 O LYS B 18 SHEET 4 G 5 THR B 103 GLU B 107 1 O LEU B 104 N LEU B 8 SHEET 5 G 5 VAL B 134 ILE B 136 1 O ALA B 135 N LEU B 105 SHEET 1 H 3 TYR B 53 VAL B 54 0 SHEET 2 H 3 VAL B 35 PRO B 38 -1 N GLY B 36 O TYR B 53 SHEET 3 H 3 LEU B 65 LYS B 68 -1 O LYS B 68 N VAL B 35 SHEET 1 I 2 ILE B 71 GLU B 72 0 SHEET 2 I 2 ILE B 75 ILE B 76 -1 O ILE B 75 N GLU B 72 SHEET 1 J 2 ALA B 131 MET B 132 0 SHEET 2 J 2 ILE B 357 THR B 358 -1 O ILE B 357 N MET B 132 SHEET 1 K 3 TYR B 169 ALA B 170 0 SHEET 2 K 3 VAL B 159 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 K 3 MET B 176 LEU B 178 -1 O MET B 176 N ASN B 162 SHEET 1 L 4 TYR B 169 ALA B 170 0 SHEET 2 L 4 VAL B 159 TYR B 166 -1 N TYR B 166 O TYR B 169 SHEET 3 L 4 GLY B 150 GLY B 156 -1 N VAL B 152 O VAL B 163 SHEET 4 L 4 VAL B 298 MET B 299 1 O VAL B 298 N ILE B 151 SHEET 1 M 2 LYS B 238 GLU B 241 0 SHEET 2 M 2 VAL B 247 ILE B 250 -1 O ILE B 250 N LYS B 238 LINK OE1 GLN A 137 MG MG A 401 1555 1555 1.90 LINK OD2 ASP A 154 MG MG A 401 1555 1555 1.83 LINK OD1 ASP A 154 MG MG A 401 1555 1555 1.91 LINK MG MG A 401 O3B ADP A 402 1555 1555 1.78 LINK MG MG A 401 O2B ADP A 402 1555 1555 1.80 LINK OE1 GLN B 137 MG MG B 401 1555 1555 1.89 LINK OD2 ASP B 154 MG MG B 401 1555 1555 1.85 LINK OD1 ASP B 154 MG MG B 401 1555 1555 1.89 LINK MG MG B 401 O3B ADP B 402 1555 1555 1.78 LINK MG MG B 401 O2B ADP B 402 1555 1555 1.81 CISPEP 1 GLY A 15 LEU A 16 0 11.79 CISPEP 2 GLY A 23 ASP A 24 0 3.45 CISPEP 3 GLY A 46 MET A 47 0 -0.60 CISPEP 4 GLY A 55 ASP A 56 0 3.14 CISPEP 5 LYS A 113 ALA A 114 0 18.74 CISPEP 6 ASP A 157 GLY A 158 0 -4.75 CISPEP 7 GLU A 167 GLY A 168 0 -7.31 CISPEP 8 ALA A 181 GLY A 182 0 8.98 CISPEP 9 ILE A 309 ALA A 310 0 21.16 CISPEP 10 SER A 350 THR A 351 0 6.96 CISPEP 11 GLY B 15 LEU B 16 0 10.63 CISPEP 12 GLY B 23 ASP B 24 0 4.70 CISPEP 13 GLY B 46 MET B 47 0 -3.86 CISPEP 14 GLY B 55 ASP B 56 0 2.92 CISPEP 15 LYS B 113 ALA B 114 0 20.32 CISPEP 16 ASP B 157 GLY B 158 0 -4.90 CISPEP 17 GLU B 167 GLY B 168 0 -7.52 CISPEP 18 ALA B 181 GLY B 182 0 10.40 CISPEP 19 ILE B 309 ALA B 310 0 21.96 CISPEP 20 SER B 350 THR B 351 0 7.00 SITE 1 AC1 3 GLN A 137 ASP A 154 ADP A 402 SITE 1 AC2 16 GLY A 13 SER A 14 LEU A 16 LYS A 18 SITE 2 AC2 16 GLN A 137 ASP A 154 GLY A 156 ASP A 157 SITE 3 AC2 16 ARG A 210 GLU A 214 GLY A 301 GLY A 302 SITE 4 AC2 16 THR A 303 MET A 305 TYR A 306 MG A 401 SITE 1 AC3 3 GLN B 137 ASP B 154 ADP B 402 SITE 1 AC4 17 GLY B 13 SER B 14 LEU B 16 LYS B 18 SITE 2 AC4 17 GLN B 137 ASP B 154 GLY B 156 ASP B 157 SITE 3 AC4 17 ARG B 210 LYS B 213 GLU B 214 GLY B 301 SITE 4 AC4 17 GLY B 302 THR B 303 MET B 305 TYR B 306 SITE 5 AC4 17 MG B 401 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000