HEADER TRANSFERASE 03-NOV-15 3JBZ TITLE CRYSTAL STRUCTURE OF MTOR DOCKED INTO EM MAP OF DIMERIC ATM KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE MTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 1385-2020, 2119-2549); COMPND 5 SYNONYM: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED COMPND 6 PROTEIN 1, FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN, MAMMALIAN COMPND 7 TARGET OF RAPAMYCIN, MTOR, MECHANISTIC TARGET OF RAPAMYCIN, RAPAMYCIN COMPND 8 AND FKBP12 TARGET 1, RAPAMYCIN TARGET PROTEIN 1; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS MTOR, PIKK, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR W.C.Y.LAU REVDAT 5 20-MAR-24 3JBZ 1 REMARK LINK REVDAT 4 18-DEC-19 3JBZ 1 REMARK REVDAT 3 09-OCT-19 3JBZ 1 CRYST1 REVDAT 2 23-NOV-16 3JBZ 1 SOURCE REVDAT 1 16-NOV-16 3JBZ 0 JRNL AUTH W.C.LAU,Y.LI,Z.LIU,Y.GAO,Q.ZHANG,M.S.HUEN JRNL TITL STRUCTURE OF THE HUMAN DIMERIC ATM KINASE. JRNL REF CELL CYCLE V. 15 1117 2016 JRNL REFN ESSN 1551-4005 JRNL PMID 27097373 JRNL DOI 10.1080/15384101.2016.1158362 REMARK 2 REMARK 2 RESOLUTION. 28.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SIMPLE, EMAN2 REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4JSV REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 28.00 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3JBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1000160509. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : SINGLE PARTICLE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DIMERIC ATM KINASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.02 REMARK 245 SAMPLE SUPPORT DETAILS : CONTINUOUS CARBON GRID REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : 25 MM TRIS PH 8.0, 100 MM NACL, REMARK 245 1 MM TCEP, 10% GLYCEROL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-SEP-15 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 251 REMARK 245 TEMPERATURE (KELVIN) : 293.00 REMARK 245 MICROSCOPE MODEL : JEOL 2010 REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : LAB6 REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1815 REMARK 465 LYS A 1816 REMARK 465 LEU A 1817 REMARK 465 ARG A 1818 REMARK 465 HIS A 1819 REMARK 465 ALA A 1820 REMARK 465 SER A 1821 REMARK 465 GLY A 1822 REMARK 465 ALA A 1823 REMARK 465 ASN A 1824 REMARK 465 ILE A 1825 REMARK 465 THR A 1826 REMARK 465 ASN A 1827 REMARK 465 ALA A 1828 REMARK 465 THR A 1829 REMARK 465 THR A 1830 REMARK 465 ALA A 1831 REMARK 465 ALA A 1832 REMARK 465 THR A 1833 REMARK 465 THR A 1834 REMARK 465 ALA A 1835 REMARK 465 ALA A 1836 REMARK 465 THR A 1837 REMARK 465 ALA A 1838 REMARK 465 THR A 1839 REMARK 465 THR A 1840 REMARK 465 THR A 1841 REMARK 465 ALA A 1842 REMARK 465 SER A 1843 REMARK 465 THR A 1844 REMARK 465 GLU A 1845 REMARK 465 GLY A 1846 REMARK 465 SER A 1847 REMARK 465 ASN A 1848 REMARK 465 SER A 1849 REMARK 465 GLU A 1850 REMARK 465 SER A 1851 REMARK 465 GLU A 1852 REMARK 465 ALA A 1853 REMARK 465 GLU A 1854 REMARK 465 SER A 1855 REMARK 465 THR A 1856 REMARK 465 GLU A 1857 REMARK 465 ASN A 1858 REMARK 465 SER A 1859 REMARK 465 PRO A 1860 REMARK 465 THR A 1861 REMARK 465 PRO A 1862 REMARK 465 SER A 1863 REMARK 465 PRO A 1864 REMARK 465 LEU A 1865 REMARK 465 GLN A 1866 REMARK 465 ILE A 2021 REMARK 465 LEU A 2022 REMARK 465 TRP A 2023 REMARK 465 HIS A 2024 REMARK 465 GLU A 2025 REMARK 465 MET A 2026 REMARK 465 TRP A 2027 REMARK 465 HIS A 2028 REMARK 465 GLU A 2029 REMARK 465 GLY A 2030 REMARK 465 LEU A 2031 REMARK 465 GLU A 2032 REMARK 465 GLU A 2033 REMARK 465 ALA A 2034 REMARK 465 SER A 2035 REMARK 465 ARG A 2036 REMARK 465 LEU A 2037 REMARK 465 TYR A 2038 REMARK 465 PHE A 2039 REMARK 465 GLY A 2040 REMARK 465 GLU A 2041 REMARK 465 ARG A 2042 REMARK 465 ASN A 2043 REMARK 465 VAL A 2044 REMARK 465 LYS A 2045 REMARK 465 GLY A 2046 REMARK 465 MET A 2047 REMARK 465 PHE A 2048 REMARK 465 GLU A 2049 REMARK 465 VAL A 2050 REMARK 465 LEU A 2051 REMARK 465 GLU A 2052 REMARK 465 PRO A 2053 REMARK 465 LEU A 2054 REMARK 465 HIS A 2055 REMARK 465 ALA A 2056 REMARK 465 MET A 2057 REMARK 465 MET A 2058 REMARK 465 GLU A 2059 REMARK 465 ARG A 2060 REMARK 465 GLY A 2061 REMARK 465 PRO A 2062 REMARK 465 GLN A 2063 REMARK 465 THR A 2064 REMARK 465 LEU A 2065 REMARK 465 LYS A 2066 REMARK 465 GLU A 2067 REMARK 465 THR A 2068 REMARK 465 SER A 2069 REMARK 465 PHE A 2070 REMARK 465 ASN A 2071 REMARK 465 GLN A 2072 REMARK 465 ALA A 2073 REMARK 465 TYR A 2074 REMARK 465 GLY A 2075 REMARK 465 ARG A 2076 REMARK 465 ASP A 2077 REMARK 465 LEU A 2078 REMARK 465 MET A 2079 REMARK 465 GLU A 2080 REMARK 465 ALA A 2081 REMARK 465 GLN A 2082 REMARK 465 GLU A 2083 REMARK 465 TRP A 2084 REMARK 465 CYS A 2085 REMARK 465 ARG A 2086 REMARK 465 LYS A 2087 REMARK 465 TYR A 2088 REMARK 465 MET A 2089 REMARK 465 LYS A 2090 REMARK 465 SER A 2091 REMARK 465 GLY A 2092 REMARK 465 ASN A 2093 REMARK 465 VAL A 2094 REMARK 465 LYS A 2095 REMARK 465 ASP A 2096 REMARK 465 LEU A 2097 REMARK 465 THR A 2098 REMARK 465 GLN A 2099 REMARK 465 ALA A 2100 REMARK 465 TRP A 2101 REMARK 465 ASP A 2102 REMARK 465 LEU A 2103 REMARK 465 TYR A 2104 REMARK 465 TYR A 2105 REMARK 465 HIS A 2106 REMARK 465 VAL A 2107 REMARK 465 PHE A 2108 REMARK 465 ARG A 2109 REMARK 465 ARG A 2110 REMARK 465 ILE A 2111 REMARK 465 SER A 2112 REMARK 465 LYS A 2113 REMARK 465 GLN A 2114 REMARK 465 LEU A 2115 REMARK 465 PRO A 2116 REMARK 465 GLN A 2117 REMARK 465 LEU A 2118 REMARK 465 LYS A 2437 REMARK 465 GLY A 2438 REMARK 465 ASN A 2439 REMARK 465 LYS A 2440 REMARK 465 ARG A 2441 REMARK 465 SER A 2442 REMARK 465 ARG A 2443 REMARK 465 THR A 2444 REMARK 465 ARG A 2445 REMARK 465 THR A 2446 REMARK 465 ASP A 2447 REMARK 465 SER A 2448 REMARK 465 TYR A 2449 REMARK 465 SER A 2450 REMARK 465 ALA A 2451 REMARK 465 GLY A 2452 REMARK 465 GLN A 2453 REMARK 465 SER A 2454 REMARK 465 VAL A 2455 REMARK 465 GLU A 2456 REMARK 465 ILE A 2457 REMARK 465 LEU A 2458 REMARK 465 ASP A 2459 REMARK 465 GLY A 2460 REMARK 465 VAL A 2461 REMARK 465 GLU A 2462 REMARK 465 LEU A 2463 REMARK 465 GLY A 2464 REMARK 465 GLU A 2465 REMARK 465 PRO A 2466 REMARK 465 ALA A 2467 REMARK 465 HIS A 2468 REMARK 465 LYS A 2469 REMARK 465 LYS A 2470 REMARK 465 THR A 2471 REMARK 465 GLY A 2472 REMARK 465 THR A 2473 REMARK 465 THR A 2474 REMARK 465 VAL A 2475 REMARK 465 PRO A 2476 REMARK 465 GLU A 2477 REMARK 465 SER A 2478 REMARK 465 ILE A 2479 REMARK 465 HIS A 2480 REMARK 465 SER A 2481 REMARK 465 PHE A 2482 REMARK 465 ILE A 2483 REMARK 465 GLY A 2484 REMARK 465 ASP A 2485 REMARK 465 GLY A 2486 REMARK 465 LEU A 2487 REMARK 465 VAL A 2488 REMARK 465 LYS A 2489 REMARK 465 PRO A 2490 REMARK 465 GLU A 2491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 2357 O3B ADP A 2601 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1917 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1444 -172.16 48.22 REMARK 500 ILE A1445 99.52 45.98 REMARK 500 HIS A1454 15.84 52.74 REMARK 500 ASN A1470 -139.55 -89.26 REMARK 500 LYS A1471 -136.39 -124.94 REMARK 500 ASP A1473 92.14 45.75 REMARK 500 GLU A1489 55.13 -109.25 REMARK 500 LEU A1503 56.94 38.06 REMARK 500 GLN A1525 80.10 -8.04 REMARK 500 ALA A1579 77.60 -69.48 REMARK 500 TYR A1583 -153.47 -74.61 REMARK 500 SER A1584 29.68 -71.33 REMARK 500 GLN A1604 -6.16 -57.69 REMARK 500 LYS A1606 -53.53 -136.42 REMARK 500 LEU A1607 -72.66 -104.26 REMARK 500 PRO A1609 22.04 -69.52 REMARK 500 ARG A1611 3.42 163.38 REMARK 500 ARG A1622 36.09 -80.98 REMARK 500 LEU A1623 -48.09 -132.81 REMARK 500 VAL A1630 -71.57 1.04 REMARK 500 VAL A1643 -63.47 -124.02 REMARK 500 MET A1650 -82.24 40.84 REMARK 500 ASP A1680 150.25 -34.73 REMARK 500 PRO A1681 39.16 -59.58 REMARK 500 SER A1682 72.02 30.18 REMARK 500 SER A1707 -159.90 -72.05 REMARK 500 ARG A1709 88.86 -62.98 REMARK 500 ALA A1728 -75.82 -92.23 REMARK 500 THR A1734 -52.45 -2.78 REMARK 500 GLU A1735 -0.12 -50.43 REMARK 500 ARG A1784 -57.86 55.91 REMARK 500 TRP A1786 110.28 89.70 REMARK 500 ARG A1896 118.08 -12.58 REMARK 500 ASN A1899 19.54 -143.75 REMARK 500 TRP A1910 -72.37 -60.13 REMARK 500 TYR A1913 66.27 -112.09 REMARK 500 PRO A1917 -59.32 -15.76 REMARK 500 THR A1934 -55.89 -22.98 REMARK 500 GLN A1970 -57.11 139.47 REMARK 500 LYS A1981 66.35 -105.87 REMARK 500 HIS A2001 -12.97 -146.22 REMARK 500 SER A2002 30.43 -144.98 REMARK 500 PRO A2141 120.93 -35.13 REMARK 500 ASN A2147 -32.02 81.74 REMARK 500 ARG A2168 73.00 32.95 REMARK 500 LYS A2171 67.35 -100.93 REMARK 500 ASP A2191 97.74 -64.54 REMARK 500 SER A2234 -165.59 -111.34 REMARK 500 ASP A2297 -71.80 -82.32 REMARK 500 ASP A2298 -82.84 27.26 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 1914 HIS A 1915 -138.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2343 OD1 REMARK 620 2 ADP A2601 O1A 133.7 REMARK 620 3 ADP A2601 O3B 106.5 87.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2357 OD1 REMARK 620 2 ASP A2357 OD2 47.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MGF A2604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A2601 O3B REMARK 620 2 MGF A2604 F1 83.8 REMARK 620 3 MGF A2604 F2 92.3 119.4 REMARK 620 4 MGF A2604 F3 90.9 121.1 119.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 2601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGF A 2604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6501 RELATED DB: EMDB DBREF 3JBZ A 1385 2549 UNP P42345 MTOR_HUMAN 1385 2549 SEQRES 1 A 1165 GLU ARG ALA ALA LYS CYS ARG ALA TYR ALA LYS ALA LEU SEQRES 2 A 1165 HIS TYR LYS GLU LEU GLU PHE GLN LYS GLY PRO THR PRO SEQRES 3 A 1165 ALA ILE LEU GLU SER LEU ILE SER ILE ASN ASN LYS LEU SEQRES 4 A 1165 GLN GLN PRO GLU ALA ALA ALA GLY VAL LEU GLU TYR ALA SEQRES 5 A 1165 MET LYS HIS PHE GLY GLU LEU GLU ILE GLN ALA THR TRP SEQRES 6 A 1165 TYR GLU LYS LEU HIS GLU TRP GLU ASP ALA LEU VAL ALA SEQRES 7 A 1165 TYR ASP LYS LYS MET ASP THR ASN LYS ASP ASP PRO GLU SEQRES 8 A 1165 LEU MET LEU GLY ARG MET ARG CYS LEU GLU ALA LEU GLY SEQRES 9 A 1165 GLU TRP GLY GLN LEU HIS GLN GLN CYS CYS GLU LYS TRP SEQRES 10 A 1165 THR LEU VAL ASN ASP GLU THR GLN ALA LYS MET ALA ARG SEQRES 11 A 1165 MET ALA ALA ALA ALA ALA TRP GLY LEU GLY GLN TRP ASP SEQRES 12 A 1165 SER MET GLU GLU TYR THR CYS MET ILE PRO ARG ASP THR SEQRES 13 A 1165 HIS ASP GLY ALA PHE TYR ARG ALA VAL LEU ALA LEU HIS SEQRES 14 A 1165 GLN ASP LEU PHE SER LEU ALA GLN GLN CYS ILE ASP LYS SEQRES 15 A 1165 ALA ARG ASP LEU LEU ASP ALA GLU LEU THR ALA MET ALA SEQRES 16 A 1165 GLY GLU SER TYR SER ARG ALA TYR GLY ALA MET VAL SER SEQRES 17 A 1165 CYS HIS MET LEU SER GLU LEU GLU GLU VAL ILE GLN TYR SEQRES 18 A 1165 LYS LEU VAL PRO GLU ARG ARG GLU ILE ILE ARG GLN ILE SEQRES 19 A 1165 TRP TRP GLU ARG LEU GLN GLY CYS GLN ARG ILE VAL GLU SEQRES 20 A 1165 ASP TRP GLN LYS ILE LEU MET VAL ARG SER LEU VAL VAL SEQRES 21 A 1165 SER PRO HIS GLU ASP MET ARG THR TRP LEU LYS TYR ALA SEQRES 22 A 1165 SER LEU CYS GLY LYS SER GLY ARG LEU ALA LEU ALA HIS SEQRES 23 A 1165 LYS THR LEU VAL LEU LEU LEU GLY VAL ASP PRO SER ARG SEQRES 24 A 1165 GLN LEU ASP HIS PRO LEU PRO THR VAL HIS PRO GLN VAL SEQRES 25 A 1165 THR TYR ALA TYR MET LYS ASN MET TRP LYS SER ALA ARG SEQRES 26 A 1165 LYS ILE ASP ALA PHE GLN HIS MET GLN HIS PHE VAL GLN SEQRES 27 A 1165 THR MET GLN GLN GLN ALA GLN HIS ALA ILE ALA THR GLU SEQRES 28 A 1165 ASP GLN GLN HIS LYS GLN GLU LEU HIS LYS LEU MET ALA SEQRES 29 A 1165 ARG CYS PHE LEU LYS LEU GLY GLU TRP GLN LEU ASN LEU SEQRES 30 A 1165 GLN GLY ILE ASN GLU SER THR ILE PRO LYS VAL LEU GLN SEQRES 31 A 1165 TYR TYR SER ALA ALA THR GLU HIS ASP ARG SER TRP TYR SEQRES 32 A 1165 LYS ALA TRP HIS ALA TRP ALA VAL MET ASN PHE GLU ALA SEQRES 33 A 1165 VAL LEU HIS TYR LYS HIS GLN ASN GLN ALA ARG ASP GLU SEQRES 34 A 1165 LYS LYS LYS LEU ARG HIS ALA SER GLY ALA ASN ILE THR SEQRES 35 A 1165 ASN ALA THR THR ALA ALA THR THR ALA ALA THR ALA THR SEQRES 36 A 1165 THR THR ALA SER THR GLU GLY SER ASN SER GLU SER GLU SEQRES 37 A 1165 ALA GLU SER THR GLU ASN SER PRO THR PRO SER PRO LEU SEQRES 38 A 1165 GLN LYS LYS VAL THR GLU ASP LEU SER LYS THR LEU LEU SEQRES 39 A 1165 MET TYR THR VAL PRO ALA VAL GLN GLY PHE PHE ARG SER SEQRES 40 A 1165 ILE SER LEU SER ARG GLY ASN ASN LEU GLN ASP THR LEU SEQRES 41 A 1165 ARG VAL LEU THR LEU TRP PHE ASP TYR GLY HIS TRP PRO SEQRES 42 A 1165 ASP VAL ASN GLU ALA LEU VAL GLU GLY VAL LYS ALA ILE SEQRES 43 A 1165 GLN ILE ASP THR TRP LEU GLN VAL ILE PRO GLN LEU ILE SEQRES 44 A 1165 ALA ARG ILE ASP THR PRO ARG PRO LEU VAL GLY ARG LEU SEQRES 45 A 1165 ILE HIS GLN LEU LEU THR ASP ILE GLY ARG TYR HIS PRO SEQRES 46 A 1165 GLN ALA LEU ILE TYR PRO LEU THR VAL ALA SER LYS SER SEQRES 47 A 1165 THR THR THR ALA ARG HIS ASN ALA ALA ASN LYS ILE LEU SEQRES 48 A 1165 LYS ASN MET CYS GLU HIS SER ASN THR LEU VAL GLN GLN SEQRES 49 A 1165 ALA MET MET VAL SER GLU GLU LEU ILE ARG VAL ALA ILE SEQRES 50 A 1165 LEU TRP HIS GLU MET TRP HIS GLU GLY LEU GLU GLU ALA SEQRES 51 A 1165 SER ARG LEU TYR PHE GLY GLU ARG ASN VAL LYS GLY MET SEQRES 52 A 1165 PHE GLU VAL LEU GLU PRO LEU HIS ALA MET MET GLU ARG SEQRES 53 A 1165 GLY PRO GLN THR LEU LYS GLU THR SER PHE ASN GLN ALA SEQRES 54 A 1165 TYR GLY ARG ASP LEU MET GLU ALA GLN GLU TRP CYS ARG SEQRES 55 A 1165 LYS TYR MET LYS SER GLY ASN VAL LYS ASP LEU THR GLN SEQRES 56 A 1165 ALA TRP ASP LEU TYR TYR HIS VAL PHE ARG ARG ILE SER SEQRES 57 A 1165 LYS GLN LEU PRO GLN LEU THR SER LEU GLU LEU GLN TYR SEQRES 58 A 1165 VAL SER PRO LYS LEU LEU MET CYS ARG ASP LEU GLU LEU SEQRES 59 A 1165 ALA VAL PRO GLY THR TYR ASP PRO ASN GLN PRO ILE ILE SEQRES 60 A 1165 ARG ILE GLN SER ILE ALA PRO SER LEU GLN VAL ILE THR SEQRES 61 A 1165 SER LYS GLN ARG PRO ARG LYS LEU THR LEU MET GLY SER SEQRES 62 A 1165 ASN GLY HIS GLU PHE VAL PHE LEU LEU LYS GLY HIS GLU SEQRES 63 A 1165 ASP LEU ARG GLN ASP GLU ARG VAL MET GLN LEU PHE GLY SEQRES 64 A 1165 LEU VAL ASN THR LEU LEU ALA ASN ASP PRO THR SER LEU SEQRES 65 A 1165 ARG LYS ASN LEU SER ILE GLN ARG TYR ALA VAL ILE PRO SEQRES 66 A 1165 LEU SER THR ASN SER GLY LEU ILE GLY TRP VAL PRO HIS SEQRES 67 A 1165 CYS ASP THR LEU HIS ALA LEU ILE ARG ASP TYR ARG GLU SEQRES 68 A 1165 LYS LYS LYS ILE LEU LEU ASN ILE GLU HIS ARG ILE MET SEQRES 69 A 1165 LEU ARG MET ALA PRO ASP TYR ASP HIS LEU THR LEU MET SEQRES 70 A 1165 GLN LYS VAL GLU VAL PHE GLU HIS ALA VAL ASN ASN THR SEQRES 71 A 1165 ALA GLY ASP ASP LEU ALA LYS LEU LEU TRP LEU LYS SER SEQRES 72 A 1165 PRO SER SER GLU VAL TRP PHE ASP ARG ARG THR ASN TYR SEQRES 73 A 1165 THR ARG SER LEU ALA VAL MET SER MET VAL GLY TYR ILE SEQRES 74 A 1165 LEU GLY LEU GLY ASP ARG HIS PRO SER ASN LEU MET LEU SEQRES 75 A 1165 ASP ARG LEU SER GLY LYS ILE LEU HIS ILE ASP PHE GLY SEQRES 76 A 1165 ASP CYS PHE GLU VAL ALA MET THR ARG GLU LYS PHE PRO SEQRES 77 A 1165 GLU LYS ILE PRO PHE ARG LEU THR ARG MET LEU THR ASN SEQRES 78 A 1165 ALA MET GLU VAL THR GLY LEU ASP GLY ASN TYR ARG ILE SEQRES 79 A 1165 THR CYS HIS THR VAL MET GLU VAL LEU ARG GLU HIS LYS SEQRES 80 A 1165 ASP SER VAL MET ALA VAL LEU GLU ALA PHE VAL TYR ASP SEQRES 81 A 1165 PRO LEU LEU ASN TRP ARG LEU MET ASP THR ASN THR LYS SEQRES 82 A 1165 GLY ASN LYS ARG SER ARG THR ARG THR ASP SER TYR SER SEQRES 83 A 1165 ALA GLY GLN SER VAL GLU ILE LEU ASP GLY VAL GLU LEU SEQRES 84 A 1165 GLY GLU PRO ALA HIS LYS LYS THR GLY THR THR VAL PRO SEQRES 85 A 1165 GLU SER ILE HIS SER PHE ILE GLY ASP GLY LEU VAL LYS SEQRES 86 A 1165 PRO GLU ALA LEU ASN LYS LYS ALA ILE GLN ILE ILE ASN SEQRES 87 A 1165 ARG VAL ARG ASP LYS LEU THR GLY ARG ASP PHE SER HIS SEQRES 88 A 1165 ASP ASP THR LEU ASP VAL PRO THR GLN VAL GLU LEU LEU SEQRES 89 A 1165 ILE LYS GLN ALA THR SER HIS GLU ASN LEU CYS GLN CYS SEQRES 90 A 1165 TYR ILE GLY TRP CYS PRO PHE TRP HET ADP A2601 27 HET MG A2602 1 HET MG A2603 1 HET MGF A2604 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MGF TRIFLUOROMAGNESATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 MGF F3 MG 1- HELIX 1 1 GLU A 1385 GLY A 1407 1 23 HELIX 2 2 THR A 1409 LEU A 1423 1 15 HELIX 3 3 GLN A 1425 PHE A 1440 1 16 HELIX 4 4 ILE A 1445 LEU A 1453 1 9 HELIX 5 5 GLU A 1455 THR A 1469 1 15 HELIX 6 6 ASP A 1473 LEU A 1487 1 15 HELIX 7 7 GLU A 1489 GLU A 1499 1 11 HELIX 8 8 ASN A 1505 LEU A 1523 1 19 HELIX 9 9 GLN A 1525 CYS A 1534 1 10 HELIX 10 10 THR A 1540 GLN A 1554 1 15 HELIX 11 11 LEU A 1556 ALA A 1573 1 18 HELIX 12 12 ALA A 1573 MET A 1578 1 6 HELIX 13 13 TYR A 1587 GLN A 1604 1 18 HELIX 14 14 ARG A 1611 GLY A 1625 1 15 HELIX 15 15 ILE A 1629 SER A 1641 1 13 HELIX 16 16 SER A 1645 MET A 1650 1 6 HELIX 17 17 MET A 1650 GLY A 1664 1 15 HELIX 18 18 ARG A 1665 GLY A 1678 1 14 HELIX 19 19 HIS A 1693 SER A 1707 1 15 HELIX 20 20 ARG A 1709 HIS A 1730 1 22 HELIX 21 21 GLN A 1737 GLY A 1763 1 27 HELIX 22 22 THR A 1768 ARG A 1784 1 17 HELIX 23 23 TRP A 1786 ASP A 1812 1 27 HELIX 24 24 LYS A 1868 SER A 1893 1 26 HELIX 25 25 ASN A 1899 TYR A 1913 1 15 HELIX 26 26 TRP A 1916 ILE A 1930 1 15 HELIX 27 27 ILE A 1932 GLN A 1937 5 6 HELIX 28 28 VAL A 1938 ALA A 1944 1 7 HELIX 29 29 ARG A 1950 TYR A 1967 1 18 HELIX 30 30 LEU A 1972 LYS A 1981 1 10 HELIX 31 31 THR A 1984 ALA A 2020 1 37 HELIX 32 32 LEU A 2123 SER A 2127 1 5 HELIX 33 33 SER A 2127 CYS A 2133 1 7 HELIX 34 34 LEU A 2192 ASP A 2212 1 21 HELIX 35 35 ASP A 2212 LYS A 2218 1 7 HELIX 36 36 LEU A 2246 LYS A 2257 1 12 HELIX 37 37 ASN A 2262 ALA A 2272 1 11 HELIX 38 38 ASP A 2274 LEU A 2278 5 5 HELIX 39 39 THR A 2279 ASN A 2293 1 15 HELIX 40 40 ASP A 2298 SER A 2307 1 10 HELIX 41 41 SER A 2310 GLY A 2335 1 26 HELIX 42 42 GLU A 2363 ARG A 2368 1 6 HELIX 43 43 THR A 2380 MET A 2387 1 8 HELIX 44 44 GLY A 2394 HIS A 2410 1 17 HELIX 45 45 HIS A 2410 TYR A 2423 1 14 HELIX 46 46 ASP A 2424 THR A 2436 5 13 HELIX 47 47 LEU A 2493 THR A 2509 1 17 HELIX 48 48 ASP A 2520 SER A 2534 1 15 HELIX 49 49 SER A 2534 CYS A 2539 1 6 HELIX 50 50 TYR A 2542 CYS A 2546 5 5 SHEET 1 A 3 SER A2120 GLU A2122 0 SHEET 2 A 3 SER A2159 VAL A2162 -1 O LEU A2160 N LEU A2121 SHEET 3 A 3 ARG A2170 LYS A2171 -1 O LYS A2171 N GLN A2161 SHEET 1 B 5 ILE A2153 ILE A2156 0 SHEET 2 B 5 THR A2173 GLY A2176 -1 O MET A2175 N SER A2155 SHEET 3 B 5 GLU A2181 LYS A2187 -1 O PHE A2182 N LEU A2174 SHEET 4 B 5 GLY A2235 GLY A2238 -1 O GLY A2235 N LYS A2187 SHEET 5 B 5 VAL A2227 PRO A2229 -1 N ILE A2228 O LEU A2236 SHEET 1 C 3 CYS A2243 THR A2245 0 SHEET 2 C 3 LEU A2344 ASP A2347 -1 O LEU A2346 N ASP A2244 SHEET 3 C 3 ILE A2353 HIS A2355 -1 O LEU A2354 N MET A2345 LINK OD1 ASN A2343 MG MG A2602 1555 1555 2.43 LINK OD1 ASP A2357 MG MG A2603 1555 1555 2.08 LINK OD2 ASP A2357 MG MG A2603 1555 1555 2.97 LINK O1A ADP A2601 MG MG A2602 1555 1555 2.03 LINK O3B ADP A2601 MG MG A2602 1555 1555 2.53 LINK O3B ADP A2601 MG MGF A2604 1555 1555 2.59 SITE 1 AC1 11 GLN A2167 LYS A2187 ILE A2237 GLY A2238 SITE 2 AC1 11 TRP A2239 VAL A2240 THR A2245 ILE A2356 SITE 3 AC1 11 ASP A2357 MG A2602 MGF A2604 SITE 1 AC2 5 SER A2342 ASN A2343 ASP A2357 ADP A2601 SITE 2 AC2 5 MGF A2604 SITE 1 AC3 2 ASP A2357 MGF A2604 SITE 1 AC4 7 ASP A2338 HIS A2340 ASN A2343 ASP A2357 SITE 2 AC4 7 ADP A2601 MG A2602 MG A2603 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004812 0.00000