HEADER VIRAL PROTEIN/IMMUNE SYSTEM 25-NOV-15 3JCB TITLE STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS ENVELOPE SPIKES BOUND WITH TITLE 2 CD4 AND MONOCLONAL ANTIBODY 36D5 CAVEAT 3JCB RESIDUES 109-209 OF CHAIN B AND RESIDUES 111-211 OF CHAIN C CAVEAT 2 3JCB ARE MODELED OUTSIDE OF THE EXPERIMENTALLY DETERMINED MAP CAVEAT 3 3JCB DENSITY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 3 CHAIN: A, E, I; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 36D5 LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: FAB; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ANTIBODY 36D5 HEAVY CHAIN; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: FAB; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD4; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: UNP RESIDUES 26-200 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_COMMON: SIV; SOURCE 4 ORGANISM_TAXID: 11723; SOURCE 5 STRAIN: SIV239/251TAIL/SUPT-CCR5 CL.30; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 MOL_ID: 3; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 4; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS CRYOELECTRON TOMOGRAPHY, IMMUNOLOGY, AIDS, HIV, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR G.HU,J.LIU,K.ROUX,K.A.TAYLOR REVDAT 4 18-JUL-18 3JCB 1 REMARK REVDAT 3 30-AUG-17 3JCB 1 JRNL REVDAT 2 02-AUG-17 3JCB 1 JRNL REMARK REVDAT 1 10-MAY-17 3JCB 0 JRNL AUTH G.HU,J.LIU,K.H.ROUX,K.A.TAYLOR JRNL TITL STRUCTURE OF SIMIAN IMMUNODEFICIENCY VIRUS ENVELOPE SPIKES JRNL TITL 2 BOUND WITH CD4 AND MONOCLONAL ANTIBODY 36D5. JRNL REF J. VIROL. V. 91 2017 JRNL REFN ESSN 1098-5514 JRNL PMID 28539445 JRNL DOI 10.1128/JVI.00134-17 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : I3, PROTOMO REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 4NCO REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 5.700 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : NULL REMARK 3 NUMBER OF PARTICLES : 1181 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: (SUBTOMOGRAM AVERAGING--APPLIED SYMMETRY: C1) REMARK 4 REMARK 4 3JCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000160521. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : TOMOGRAPHY REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : CELL REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SIMIAN IMMUNODEFICIENCY VIRUS; REMARK 245 SIV ENVELOPE BOUND TO CD4 AND REMARK 245 MONOCLONAL ANTIBODY 36D5; T- REMARK 245 CELL SURFACE GLYCOPROTEIN CD4; REMARK 245 MONOCLONAL ANTIBODY 36D5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : PLUNGED INTO LIQUID ETHANE. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 16-AUG-08 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F415 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : -65.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 65.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 31000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 178A REMARK 465 ASP A 178B REMARK 465 VAL A 178C REMARK 465 VAL A 178D REMARK 465 GLN A 178E REMARK 465 ILE A 178F REMARK 465 ASN A 178G REMARK 465 GLU A 178H REMARK 465 ASN A 178I REMARK 465 GLN A 178J REMARK 465 GLY A 178K REMARK 465 ASN A 178L REMARK 465 ARG A 178M REMARK 465 SER A 178N REMARK 465 ASN A 178O REMARK 465 ASN A 178P REMARK 465 SER A 178Q REMARK 465 ASN A 178R REMARK 465 LYS A 178S REMARK 465 GLU A 178T REMARK 465 GLN A 403 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 ASN A 406 REMARK 465 SER A 407 REMARK 465 THR A 408 REMARK 465 GLY A 409 REMARK 465 SER A 410 REMARK 465 GLN B 168 REMARK 465 SER B 169 REMARK 465 ASN B 170 REMARK 465 ASN B 171 REMARK 465 LYS B 172 REMARK 465 LYS C 127 REMARK 465 SER C 128 REMARK 465 THR C 129 REMARK 465 SER C 130 REMARK 465 SER C 186 REMARK 465 LEU C 187 REMARK 465 LEU E 178A REMARK 465 ASP E 178B REMARK 465 VAL E 178C REMARK 465 VAL E 178D REMARK 465 GLN E 178E REMARK 465 ILE E 178F REMARK 465 ASN E 178G REMARK 465 GLU E 178H REMARK 465 ASN E 178I REMARK 465 GLN E 178J REMARK 465 GLY E 178K REMARK 465 ASN E 178L REMARK 465 ARG E 178M REMARK 465 SER E 178N REMARK 465 ASN E 178O REMARK 465 ASN E 178P REMARK 465 SER E 178Q REMARK 465 ASN E 178R REMARK 465 LYS E 178S REMARK 465 GLU E 178T REMARK 465 GLN E 403 REMARK 465 GLY E 404 REMARK 465 SER E 405 REMARK 465 ASN E 406 REMARK 465 SER E 407 REMARK 465 THR E 408 REMARK 465 GLY E 409 REMARK 465 SER E 410 REMARK 465 LEU I 178A REMARK 465 ASP I 178B REMARK 465 VAL I 178C REMARK 465 VAL I 178D REMARK 465 GLN I 178E REMARK 465 ILE I 178F REMARK 465 ASN I 178G REMARK 465 GLU I 178H REMARK 465 ASN I 178I REMARK 465 GLN I 178J REMARK 465 GLY I 178K REMARK 465 ASN I 178L REMARK 465 ARG I 178M REMARK 465 SER I 178N REMARK 465 ASN I 178O REMARK 465 ASN I 178P REMARK 465 SER I 178Q REMARK 465 ASN I 178R REMARK 465 LYS I 178S REMARK 465 GLU I 178T REMARK 465 GLN I 403 REMARK 465 GLY I 404 REMARK 465 SER I 405 REMARK 465 ASN I 406 REMARK 465 SER I 407 REMARK 465 THR I 408 REMARK 465 GLY I 409 REMARK 465 SER I 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 120 CG1 CG2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 THR A 123 OG1 CG2 REMARK 470 VAL A 127 CG1 CG2 REMARK 470 THR A 128 OG1 CG2 REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 VAL A 134 CG1 CG2 REMARK 470 THR A 135 OG1 CG2 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 THR A 139 OG1 CG2 REMARK 470 ASP A 140 CG OD1 OD2 REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 MET A 150 CG SD CE REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 LEU A 154 CG CD1 CD2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 THR A 163 OG1 CG2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LEU A 165 CG CD1 CD2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 191 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 ILE A 194 CG1 CG2 CD1 REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 THR A 198 OG1 CG2 REMARK 470 SER A 199 OG REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 THR A 202 OG1 CG2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 THR A 303 OG1 CG2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 SER A 306 OG REMARK 470 ILE A 307 CG1 CG2 CD1 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 309 CG1 CG2 CD1 REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 470 THR A 319 OG1 CG2 REMARK 470 ASP A 321 CG OD1 OD2 REMARK 470 ILE A 322 CG1 CG2 CD1 REMARK 470 ILE A 323 CG1 CG2 CD1 REMARK 470 ASP A 325 CG OD1 OD2 REMARK 470 ILE A 326 CG1 CG2 CD1 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 ASN A 425 CG OD1 ND2 REMARK 470 MET A 426 CG SD CE REMARK 470 TRP A 427 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 427 CZ3 CH2 REMARK 470 GLN A 428 CG CD OE1 NE2 REMARK 470 ARG A 429 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 430 CG1 CG2 CD1 REMARK 470 GLN A 432 CG CD OE1 NE2 REMARK 470 VAL E 120 CG1 CG2 REMARK 470 LYS E 121 CG CD CE NZ REMARK 470 LEU E 122 CG CD1 CD2 REMARK 470 THR E 123 OG1 CG2 REMARK 470 VAL E 127 CG1 CG2 REMARK 470 THR E 128 OG1 CG2 REMARK 470 ASN E 133 CG OD1 ND2 REMARK 470 VAL E 134 CG1 CG2 REMARK 470 THR E 135 OG1 CG2 REMARK 470 ASN E 136 CG OD1 ND2 REMARK 470 ILE E 138 CG1 CG2 CD1 REMARK 470 THR E 139 OG1 CG2 REMARK 470 ASP E 140 CG OD1 OD2 REMARK 470 ASP E 149 CG OD1 OD2 REMARK 470 MET E 150 CG SD CE REMARK 470 ARG E 151 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 153 CG CD OE1 OE2 REMARK 470 LEU E 154 CG CD1 CD2 REMARK 470 LYS E 155 CG CD CE NZ REMARK 470 THR E 163 OG1 CG2 REMARK 470 GLU E 164 CG CD OE1 OE2 REMARK 470 LEU E 165 CG CD1 CD2 REMARK 470 ARG E 166 CG CD NE CZ NH1 NH2 REMARK 470 ASP E 167 CG OD1 OD2 REMARK 470 ARG E 178 CG CD NE CZ NH1 NH2 REMARK 470 TYR E 191 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG E 192 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 193 CG CD1 CD2 REMARK 470 ILE E 194 CG1 CG2 CD1 REMARK 470 ASN E 195 CG OD1 ND2 REMARK 470 THR E 198 OG1 CG2 REMARK 470 SER E 199 OG REMARK 470 ILE E 201 CG1 CG2 CD1 REMARK 470 THR E 202 OG1 CG2 REMARK 470 GLN E 203 CG CD OE1 NE2 REMARK 470 THR E 303 OG1 CG2 REMARK 470 ARG E 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 305 CG CD CE NZ REMARK 470 SER E 306 OG REMARK 470 ILE E 307 CG1 CG2 CD1 REMARK 470 ARG E 308 CG CD NE CZ NH1 NH2 REMARK 470 ILE E 309 CG1 CG2 CD1 REMARK 470 GLN E 314 CG CD OE1 NE2 REMARK 470 THR E 319 OG1 CG2 REMARK 470 ASP E 321 CG OD1 OD2 REMARK 470 ILE E 322 CG1 CG2 CD1 REMARK 470 ILE E 323 CG1 CG2 CD1 REMARK 470 ASP E 325 CG OD1 OD2 REMARK 470 ILE E 326 CG1 CG2 CD1 REMARK 470 ARG E 327 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 328 CG CD OE1 NE2 REMARK 470 ASN E 425 CG OD1 ND2 REMARK 470 MET E 426 CG SD CE REMARK 470 TRP E 427 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP E 427 CZ3 CH2 REMARK 470 GLN E 428 CG CD OE1 NE2 REMARK 470 ARG E 429 CG CD NE CZ NH1 NH2 REMARK 470 ILE E 430 CG1 CG2 CD1 REMARK 470 GLN E 432 CG CD OE1 NE2 REMARK 470 VAL I 120 CG1 CG2 REMARK 470 LYS I 121 CG CD CE NZ REMARK 470 LEU I 122 CG CD1 CD2 REMARK 470 THR I 123 OG1 CG2 REMARK 470 VAL I 127 CG1 CG2 REMARK 470 THR I 128 OG1 CG2 REMARK 470 ASN I 133 CG OD1 ND2 REMARK 470 VAL I 134 CG1 CG2 REMARK 470 THR I 135 OG1 CG2 REMARK 470 ASN I 136 CG OD1 ND2 REMARK 470 ILE I 138 CG1 CG2 CD1 REMARK 470 THR I 139 OG1 CG2 REMARK 470 ASP I 140 CG OD1 OD2 REMARK 470 ASP I 149 CG OD1 OD2 REMARK 470 MET I 150 CG SD CE REMARK 470 ARG I 151 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 153 CG CD OE1 OE2 REMARK 470 LEU I 154 CG CD1 CD2 REMARK 470 LYS I 155 CG CD CE NZ REMARK 470 THR I 163 OG1 CG2 REMARK 470 GLU I 164 CG CD OE1 OE2 REMARK 470 LEU I 165 CG CD1 CD2 REMARK 470 ARG I 166 CG CD NE CZ NH1 NH2 REMARK 470 ASP I 167 CG OD1 OD2 REMARK 470 ARG I 178 CG CD NE CZ NH1 NH2 REMARK 470 TYR I 191 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG I 192 CG CD NE CZ NH1 NH2 REMARK 470 LEU I 193 CG CD1 CD2 REMARK 470 ILE I 194 CG1 CG2 CD1 REMARK 470 ASN I 195 CG OD1 ND2 REMARK 470 THR I 198 OG1 CG2 REMARK 470 SER I 199 OG REMARK 470 ILE I 201 CG1 CG2 CD1 REMARK 470 THR I 202 OG1 CG2 REMARK 470 GLN I 203 CG CD OE1 NE2 REMARK 470 THR I 303 OG1 CG2 REMARK 470 ARG I 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 305 CG CD CE NZ REMARK 470 SER I 306 OG REMARK 470 ILE I 307 CG1 CG2 CD1 REMARK 470 ARG I 308 CG CD NE CZ NH1 NH2 REMARK 470 ILE I 309 CG1 CG2 CD1 REMARK 470 GLN I 314 CG CD OE1 NE2 REMARK 470 THR I 319 OG1 CG2 REMARK 470 ASP I 321 CG OD1 OD2 REMARK 470 ILE I 322 CG1 CG2 CD1 REMARK 470 ILE I 323 CG1 CG2 CD1 REMARK 470 ASP I 325 CG OD1 OD2 REMARK 470 ILE I 326 CG1 CG2 CD1 REMARK 470 ARG I 327 CG CD NE CZ NH1 NH2 REMARK 470 GLN I 328 CG CD OE1 NE2 REMARK 470 ASN I 425 CG OD1 ND2 REMARK 470 MET I 426 CG SD CE REMARK 470 TRP I 427 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP I 427 CZ3 CH2 REMARK 470 GLN I 428 CG CD OE1 NE2 REMARK 470 ARG I 429 CG CD NE CZ NH1 NH2 REMARK 470 ILE I 430 CG1 CG2 CD1 REMARK 470 GLN I 432 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS D 21 N GLU I 62 1.23 REMARK 500 CB ARG A 327 CB VAL C 100D 1.44 REMARK 500 NZ LYS D 21 C TYR I 61 1.63 REMARK 500 O ASP A 325 CG2 VAL C 100E 1.85 REMARK 500 NZ LYS D 21 CA GLU I 62 1.86 REMARK 500 O GLY A 472 CG GLN D 40 1.91 REMARK 500 OD1 ASP A 474 CA GLY D 41 1.92 REMARK 500 CB ARG A 327 CG1 VAL C 100D 1.96 REMARK 500 CB CYS I 119 SG CYS I 205 2.04 REMARK 500 CB CYS A 119 SG CYS A 205 2.04 REMARK 500 CB CYS E 119 SG CYS E 205 2.04 REMARK 500 O ARG C 38 O GLU C 46 2.12 REMARK 500 N ARG C 38 O GLU C 46 2.12 REMARK 500 O ARG C 38 N GLU C 46 2.15 REMARK 500 CB ARG A 327 CA VAL C 100D 2.16 REMARK 500 CE LYS D 21 CG GLU I 62 2.17 REMARK 500 NZ LYS D 21 CG GLU I 62 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 238 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO A 240 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO A 253 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS A 335 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO A 417 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO E 238 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO E 240 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO E 253 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS E 335 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO E 417 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 PRO I 238 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO I 240 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO I 253 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS I 335 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO I 417 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 77.66 62.20 REMARK 500 SER A 56 135.22 167.88 REMARK 500 ASP A 57 146.39 150.16 REMARK 500 ALA A 58 -82.31 -144.08 REMARK 500 TYR A 61 -101.84 -125.42 REMARK 500 GLU A 62 -145.97 -114.11 REMARK 500 THR A 63 -95.03 68.98 REMARK 500 PRO A 79 52.06 -91.80 REMARK 500 GLU A 83 -81.43 44.31 REMARK 500 ILE A 84 98.21 63.88 REMARK 500 ASN A 88 -114.97 61.40 REMARK 500 VAL A 89 76.31 42.11 REMARK 500 THR A 90 165.16 61.40 REMARK 500 ASN A 94 85.91 -159.50 REMARK 500 VAL A 127 -65.78 -126.76 REMARK 500 ASN A 137 148.19 -173.63 REMARK 500 ARG A 151 -126.49 55.14 REMARK 500 THR A 163 -88.89 -98.99 REMARK 500 LEU A 165 -146.75 57.34 REMARK 500 LEU A 193 -128.80 60.67 REMARK 500 ILE A 194 -44.00 79.31 REMARK 500 ASN A 195 -146.67 33.54 REMARK 500 THR A 198 13.64 57.64 REMARK 500 SER A 199 142.44 -173.87 REMARK 500 GLN A 203 -72.23 -72.70 REMARK 500 ALA A 204 -108.14 55.33 REMARK 500 CYS A 205 149.09 75.45 REMARK 500 SER A 209 -176.01 -172.47 REMARK 500 PRO A 220 -151.19 -68.51 REMARK 500 PRO A 238 99.65 -69.02 REMARK 500 GLN A 258 -50.92 71.54 REMARK 500 ASN A 262 -114.23 51.15 REMARK 500 GLU A 268 -97.38 -103.63 REMARK 500 PRO A 299 37.21 -91.39 REMARK 500 ILE A 322 -146.09 55.42 REMARK 500 ILE A 323 -155.67 -167.15 REMARK 500 GLN A 328 -117.13 41.41 REMARK 500 HIS A 352 -82.97 -123.33 REMARK 500 ASN A 355 -70.43 -32.06 REMARK 500 ASN A 363 -177.87 -69.10 REMARK 500 PHE A 391 76.56 -115.08 REMARK 500 ASN A 392 34.90 -146.07 REMARK 500 TRP A 427 -114.79 49.07 REMARK 500 ARG A 429 8.77 161.66 REMARK 500 GLN A 440 -146.89 58.62 REMARK 500 VAL A 442 80.00 55.93 REMARK 500 THR A 450 33.44 -98.39 REMARK 500 LEU B 28 -54.02 -120.45 REMARK 500 ILE B 47 -48.91 -146.74 REMARK 500 ASN B 51 -46.11 71.79 REMARK 500 REMARK 500 THIS ENTRY HAS 157 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 56 ASP A 57 148.18 REMARK 500 ASN A 80 PRO A 81 -139.59 REMARK 500 THR A 236 GLY A 237 -136.28 REMARK 500 PRO B 110 LYS B 111 141.45 REMARK 500 SER E 56 ASP E 57 148.20 REMARK 500 ASN E 80 PRO E 81 -139.64 REMARK 500 THR E 236 GLY E 237 -136.20 REMARK 500 SER I 56 ASP I 57 148.21 REMARK 500 ASN I 80 PRO I 81 -139.63 REMARK 500 THR I 236 GLY I 237 -136.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-6542 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6538 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6539 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6540 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6541 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6543 RELATED DB: EMDB REMARK 900 RELATED ID: 3JCC RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENVELOPE GLYCOPROTEIN WAS FROM SIMIAN IMMUNODEFICIENCY VIRUS, BUT REMARK 999 THE MODELED SEQUENCE IS FROM HIV-1. DBREF 3JCB D 1 175 UNP P01730 CD4_HUMAN 26 200 DBREF 3JCB A 44 493 PDB 3JCB 3JCB 44 493 DBREF 3JCB E 44 493 PDB 3JCB 3JCB 44 493 DBREF 3JCB I 44 493 PDB 3JCB 3JCB 44 493 DBREF 3JCB B 8 209 PDB 3JCB 3JCB 8 209 DBREF 3JCB C 1 211 PDB 3JCB 3JCB 1 211 SEQRES 1 A 448 VAL TRP LYS ASP ALA GLU THR THR LEU PHE CYS ALA SER SEQRES 2 A 448 ASP ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP SEQRES 3 A 448 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 448 GLU ILE HIS LEU GLU ASN VAL THR GLU GLU PHE ASN MET SEQRES 5 A 448 TRP LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE SEQRES 6 A 448 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 A 448 LEU THR PRO LEU CYS VAL THR LEU GLN CYS THR ASN VAL SEQRES 8 A 448 THR ASN ASN ILE THR ASP ASP MET ARG GLY GLU LEU LYS SEQRES 9 A 448 ASN CYS SER PHE ASN MET THR THR GLU LEU ARG ASP LYS SEQRES 10 A 448 LYS GLN LYS VAL TYR SER LEU PHE TYR ARG LEU ASP VAL SEQRES 11 A 448 VAL GLN ILE ASN GLU ASN GLN GLY ASN ARG SER ASN ASN SEQRES 12 A 448 SER ASN LYS GLU TYR ARG LEU ILE ASN CYS ASN THR SER SEQRES 13 A 448 ALA ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO SEQRES 14 A 448 ILE PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE SEQRES 15 A 448 LEU LYS CYS LYS ASP LYS LYS PHE ASN GLY THR GLY PRO SEQRES 16 A 448 CYS PRO SER VAL SER THR VAL GLN CYS THR HIS GLY ILE SEQRES 17 A 448 LYS PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER SEQRES 18 A 448 LEU ALA GLU GLU GLU VAL MET ILE ARG SER GLU ASN ILE SEQRES 19 A 448 THR ASN ASN ALA LYS ASN ILE LEU VAL GLN PHE ASN THR SEQRES 20 A 448 PRO VAL GLN ILE ASN CYS THR ARG PRO ASN ASN ASN THR SEQRES 21 A 448 ARG LYS SER ILE ARG ILE GLY PRO GLY GLN ALA PHE TYR SEQRES 22 A 448 ALA THR GLY ASP ILE ILE GLY ASP ILE ARG GLN ALA HIS SEQRES 23 A 448 CYS ASN VAL SER LYS ALA THR TRP ASN GLU THR LEU GLY SEQRES 24 A 448 LYS VAL VAL LYS GLN LEU ARG LYS HIS PHE GLY ASN ASN SEQRES 25 A 448 THR ILE ILE ARG PHE ALA ASN SER SER GLY GLY ASP LEU SEQRES 26 A 448 GLU VAL THR THR HIS SER PHE ASN CYS GLY GLY GLU PHE SEQRES 27 A 448 PHE TYR CYS ASN THR SER GLY LEU PHE ASN SER THR TRP SEQRES 28 A 448 ILE SER ASN THR SER VAL GLN GLY SER ASN SER THR GLY SEQRES 29 A 448 SER ASN ASP SER ILE THR LEU PRO CYS ARG ILE LYS GLN SEQRES 30 A 448 ILE ILE ASN MET TRP GLN ARG ILE GLY GLN ALA MET TYR SEQRES 31 A 448 ALA PRO PRO ILE GLN GLY VAL ILE ARG CYS VAL SER ASN SEQRES 32 A 448 ILE THR GLY LEU ILE LEU THR ARG ASP GLY GLY SER THR SEQRES 33 A 448 ASN SER THR THR GLU THR PHE ARG PRO GLY GLY GLY ASP SEQRES 34 A 448 MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS SEQRES 35 A 448 VAL VAL LYS ILE GLU PRO SEQRES 1 B 207 THR PHE VAL SER VAL ALA PRO GLY GLN THR ALA ARG ILE SEQRES 2 B 207 THR CYS GLY GLU GLU SER LEU GLY SER ARG SER VAL ILE SEQRES 3 B 207 TRP TYR GLN GLN ARG PRO GLY GLN ALA PRO SER LEU ILE SEQRES 4 B 207 ILE TYR ASN ASN ASN ASP ARG PRO SER GLY ILE PRO ASP SEQRES 5 B 207 ARG PHE SER GLY SER PRO GLY SER THR PHE GLY THR THR SEQRES 6 B 207 ALA THR LEU THR ILE THR SER VAL GLU ALA GLY ASP GLU SEQRES 7 B 207 ALA ASP TYR TYR CYS HIS ILE TRP ASP SER ARG ARG PRO SEQRES 8 B 207 THR ASN TRP VAL PHE GLY GLU GLY THR THR LEU ILE VAL SEQRES 9 B 207 LEU SER GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE SEQRES 10 B 207 PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR SEQRES 11 B 207 LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL SEQRES 12 B 207 THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA SEQRES 13 B 207 GLY VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN SEQRES 14 B 207 LYS TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU SEQRES 15 B 207 GLN TRP LYS SER HIS LYS SER TYR SER CYS GLN VAL THR SEQRES 16 B 207 HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO SEQRES 1 C 232 GLN VAL HIS LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 C 232 PRO SER GLU THR LEU SER LEU THR CYS ASN VAL SER GLY SEQRES 3 C 232 THR LEU VAL ARG ASP ASN TYR TRP SER TRP ILE ARG GLN SEQRES 4 C 232 PRO LEU GLY LYS GLN PRO GLU TRP ILE GLY TYR VAL HIS SEQRES 5 C 232 ASP SER GLY ASP THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 C 232 ARG VAL HIS LEU SER LEU ASP LYS SER LYS ASN LEU VAL SEQRES 7 C 232 SER LEU ARG LEU THR GLY VAL THR ALA ALA ASP SER ALA SEQRES 8 C 232 ILE TYR TYR CYS ALA THR THR LYS HIS GLY ARG ARG ILE SEQRES 9 C 232 TYR GLY VAL VAL ALA PHE LYS GLU TRP PHE THR TYR PHE SEQRES 10 C 232 TYR MET ASP VAL TRP GLY LYS GLY THR SER VAL THR VAL SEQRES 11 C 232 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 C 232 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 C 232 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 C 232 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 C 232 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 C 232 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 C 232 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 C 232 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 1 D 175 LYS LYS VAL VAL LEU GLY LYS LYS GLY ASP THR VAL GLU SEQRES 2 D 175 LEU THR CYS THR ALA SER GLN LYS LYS SER ILE GLN PHE SEQRES 3 D 175 HIS TRP LYS ASN SER ASN GLN ILE LYS ILE LEU GLY ASN SEQRES 4 D 175 GLN GLY SER PHE LEU THR LYS GLY PRO SER LYS LEU ASN SEQRES 5 D 175 ASP ARG ALA ASP SER ARG ARG SER LEU TRP ASP GLN GLY SEQRES 6 D 175 ASN PHE PRO LEU ILE ILE LYS ASN LEU LYS ILE GLU ASP SEQRES 7 D 175 SER ASP THR TYR ILE CYS GLU VAL GLU ASP GLN LYS GLU SEQRES 8 D 175 GLU VAL GLN LEU LEU VAL PHE GLY LEU THR ALA ASN SER SEQRES 9 D 175 ASP THR HIS LEU LEU GLN GLY GLN SER LEU THR LEU THR SEQRES 10 D 175 LEU GLU SER PRO PRO GLY SER SER PRO SER VAL GLN CYS SEQRES 11 D 175 ARG SER PRO ARG GLY LYS ASN ILE GLN GLY GLY LYS THR SEQRES 12 D 175 LEU SER VAL SER GLN LEU GLU LEU GLN ASP SER GLY THR SEQRES 13 D 175 TRP THR CYS THR VAL LEU GLN ASN GLN LYS LYS VAL GLU SEQRES 14 D 175 PHE LYS ILE ASP ILE VAL SEQRES 1 E 448 VAL TRP LYS ASP ALA GLU THR THR LEU PHE CYS ALA SER SEQRES 2 E 448 ASP ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP SEQRES 3 E 448 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 E 448 GLU ILE HIS LEU GLU ASN VAL THR GLU GLU PHE ASN MET SEQRES 5 E 448 TRP LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE SEQRES 6 E 448 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 E 448 LEU THR PRO LEU CYS VAL THR LEU GLN CYS THR ASN VAL SEQRES 8 E 448 THR ASN ASN ILE THR ASP ASP MET ARG GLY GLU LEU LYS SEQRES 9 E 448 ASN CYS SER PHE ASN MET THR THR GLU LEU ARG ASP LYS SEQRES 10 E 448 LYS GLN LYS VAL TYR SER LEU PHE TYR ARG LEU ASP VAL SEQRES 11 E 448 VAL GLN ILE ASN GLU ASN GLN GLY ASN ARG SER ASN ASN SEQRES 12 E 448 SER ASN LYS GLU TYR ARG LEU ILE ASN CYS ASN THR SER SEQRES 13 E 448 ALA ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO SEQRES 14 E 448 ILE PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE SEQRES 15 E 448 LEU LYS CYS LYS ASP LYS LYS PHE ASN GLY THR GLY PRO SEQRES 16 E 448 CYS PRO SER VAL SER THR VAL GLN CYS THR HIS GLY ILE SEQRES 17 E 448 LYS PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER SEQRES 18 E 448 LEU ALA GLU GLU GLU VAL MET ILE ARG SER GLU ASN ILE SEQRES 19 E 448 THR ASN ASN ALA LYS ASN ILE LEU VAL GLN PHE ASN THR SEQRES 20 E 448 PRO VAL GLN ILE ASN CYS THR ARG PRO ASN ASN ASN THR SEQRES 21 E 448 ARG LYS SER ILE ARG ILE GLY PRO GLY GLN ALA PHE TYR SEQRES 22 E 448 ALA THR GLY ASP ILE ILE GLY ASP ILE ARG GLN ALA HIS SEQRES 23 E 448 CYS ASN VAL SER LYS ALA THR TRP ASN GLU THR LEU GLY SEQRES 24 E 448 LYS VAL VAL LYS GLN LEU ARG LYS HIS PHE GLY ASN ASN SEQRES 25 E 448 THR ILE ILE ARG PHE ALA ASN SER SER GLY GLY ASP LEU SEQRES 26 E 448 GLU VAL THR THR HIS SER PHE ASN CYS GLY GLY GLU PHE SEQRES 27 E 448 PHE TYR CYS ASN THR SER GLY LEU PHE ASN SER THR TRP SEQRES 28 E 448 ILE SER ASN THR SER VAL GLN GLY SER ASN SER THR GLY SEQRES 29 E 448 SER ASN ASP SER ILE THR LEU PRO CYS ARG ILE LYS GLN SEQRES 30 E 448 ILE ILE ASN MET TRP GLN ARG ILE GLY GLN ALA MET TYR SEQRES 31 E 448 ALA PRO PRO ILE GLN GLY VAL ILE ARG CYS VAL SER ASN SEQRES 32 E 448 ILE THR GLY LEU ILE LEU THR ARG ASP GLY GLY SER THR SEQRES 33 E 448 ASN SER THR THR GLU THR PHE ARG PRO GLY GLY GLY ASP SEQRES 34 E 448 MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS SEQRES 35 E 448 VAL VAL LYS ILE GLU PRO SEQRES 1 I 448 VAL TRP LYS ASP ALA GLU THR THR LEU PHE CYS ALA SER SEQRES 2 I 448 ASP ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP SEQRES 3 I 448 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 I 448 GLU ILE HIS LEU GLU ASN VAL THR GLU GLU PHE ASN MET SEQRES 5 I 448 TRP LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE SEQRES 6 I 448 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 I 448 LEU THR PRO LEU CYS VAL THR LEU GLN CYS THR ASN VAL SEQRES 8 I 448 THR ASN ASN ILE THR ASP ASP MET ARG GLY GLU LEU LYS SEQRES 9 I 448 ASN CYS SER PHE ASN MET THR THR GLU LEU ARG ASP LYS SEQRES 10 I 448 LYS GLN LYS VAL TYR SER LEU PHE TYR ARG LEU ASP VAL SEQRES 11 I 448 VAL GLN ILE ASN GLU ASN GLN GLY ASN ARG SER ASN ASN SEQRES 12 I 448 SER ASN LYS GLU TYR ARG LEU ILE ASN CYS ASN THR SER SEQRES 13 I 448 ALA ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO SEQRES 14 I 448 ILE PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE SEQRES 15 I 448 LEU LYS CYS LYS ASP LYS LYS PHE ASN GLY THR GLY PRO SEQRES 16 I 448 CYS PRO SER VAL SER THR VAL GLN CYS THR HIS GLY ILE SEQRES 17 I 448 LYS PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER SEQRES 18 I 448 LEU ALA GLU GLU GLU VAL MET ILE ARG SER GLU ASN ILE SEQRES 19 I 448 THR ASN ASN ALA LYS ASN ILE LEU VAL GLN PHE ASN THR SEQRES 20 I 448 PRO VAL GLN ILE ASN CYS THR ARG PRO ASN ASN ASN THR SEQRES 21 I 448 ARG LYS SER ILE ARG ILE GLY PRO GLY GLN ALA PHE TYR SEQRES 22 I 448 ALA THR GLY ASP ILE ILE GLY ASP ILE ARG GLN ALA HIS SEQRES 23 I 448 CYS ASN VAL SER LYS ALA THR TRP ASN GLU THR LEU GLY SEQRES 24 I 448 LYS VAL VAL LYS GLN LEU ARG LYS HIS PHE GLY ASN ASN SEQRES 25 I 448 THR ILE ILE ARG PHE ALA ASN SER SER GLY GLY ASP LEU SEQRES 26 I 448 GLU VAL THR THR HIS SER PHE ASN CYS GLY GLY GLU PHE SEQRES 27 I 448 PHE TYR CYS ASN THR SER GLY LEU PHE ASN SER THR TRP SEQRES 28 I 448 ILE SER ASN THR SER VAL GLN GLY SER ASN SER THR GLY SEQRES 29 I 448 SER ASN ASP SER ILE THR LEU PRO CYS ARG ILE LYS GLN SEQRES 30 I 448 ILE ILE ASN MET TRP GLN ARG ILE GLY GLN ALA MET TYR SEQRES 31 I 448 ALA PRO PRO ILE GLN GLY VAL ILE ARG CYS VAL SER ASN SEQRES 32 I 448 ILE THR GLY LEU ILE LEU THR ARG ASP GLY GLY SER THR SEQRES 33 I 448 ASN SER THR THR GLU THR PHE ARG PRO GLY GLY GLY ASP SEQRES 34 I 448 MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS SEQRES 35 I 448 VAL VAL LYS ILE GLU PRO HELIX 1 1 GLU A 64 CYS A 74 1 11 HELIX 2 2 ASN A 94 LYS A 97 5 4 HELIX 3 3 ASN A 98 LYS A 117 1 20 HELIX 4 4 LYS A 335 LYS A 351 1 17 HELIX 5 5 ASP A 368 THR A 373 1 6 HELIX 6 6 MET A 475 SER A 481 1 7 HELIX 7 7 GLU A 482 TYR A 486 5 5 HELIX 8 8 GLU B 79 GLU B 83 5 5 HELIX 9 9 SER B 122 ALA B 128 1 7 HELIX 10 10 THR B 182 HIS B 189 1 8 HELIX 11 11 LEU C 28 ASN C 32 5 5 HELIX 12 12 PRO C 61 LYS C 64 5 4 HELIX 13 13 THR C 83 SER C 87 5 5 HELIX 14 14 GLY C 100C TRP C 100J 5 8 HELIX 15 15 SER C 154 ALA C 156 5 3 HELIX 16 16 LYS C 199 ASN C 202 5 4 HELIX 17 17 ARG D 58 GLY D 65 5 8 HELIX 18 18 LYS D 75 SER D 79 5 5 HELIX 19 19 GLU D 150 SER D 154 5 5 HELIX 20 20 GLU E 64 CYS E 74 1 11 HELIX 21 21 ASN E 94 LYS E 97 5 4 HELIX 22 22 ASN E 98 LYS E 117 1 20 HELIX 23 23 LYS E 335 LYS E 351 1 17 HELIX 24 24 ASP E 368 THR E 373 1 6 HELIX 25 25 MET E 475 SER E 481 1 7 HELIX 26 26 GLU E 482 TYR E 486 5 5 HELIX 27 27 GLU I 64 CYS I 74 1 11 HELIX 28 28 ASN I 94 LYS I 97 5 4 HELIX 29 29 ASN I 98 LYS I 117 1 20 HELIX 30 30 LYS I 335 LYS I 351 1 17 HELIX 31 31 ASP I 368 THR I 373 1 6 HELIX 32 32 MET I 475 SER I 481 1 7 HELIX 33 33 GLU I 482 TYR I 486 5 5 SHEET 1 A 4 TRP A 45 ASP A 47 0 SHEET 2 A 4 LYS A 487 ILE A 491 -1 O LYS A 490 N LYS A 46 SHEET 3 A 4 PHE A 223 CYS A 228 -1 N ALA A 224 O VAL A 489 SHEET 4 A 4 VAL A 242 VAL A 245 -1 O VAL A 245 N ILE A 225 SHEET 1 B 2 PHE A 53 ALA A 55 0 SHEET 2 B 2 HIS A 216 CYS A 218 -1 O CYS A 218 N PHE A 53 SHEET 1 C 3 GLN A 130 THR A 132 0 SHEET 2 C 3 LEU A 154 THR A 162 -1 O SER A 158 N GLN A 130 SHEET 3 C 3 LYS A 169 TYR A 177 -1 O SER A 174 N CYS A 157 SHEET 1 D 3 ILE A 201 THR A 202 0 SHEET 2 D 3 GLN A 432 MET A 434 1 O GLN A 432 N ILE A 201 SHEET 3 D 3 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 E 6 MET A 271 SER A 274 0 SHEET 2 E 6 ILE A 284 GLN A 287 -1 O GLN A 287 N MET A 271 SHEET 3 E 6 LEU A 452 ASP A 457 -1 O LEU A 452 N VAL A 286 SHEET 4 E 6 THR A 465 PRO A 470 -1 O ARG A 469 N THR A 455 SHEET 5 E 6 ILE A 358 ARG A 360 1 N ARG A 360 O GLU A 466 SHEET 6 E 6 THR A 394 TRP A 395 -1 O TRP A 395 N ILE A 359 SHEET 1 F 6 PHE A 376 ASN A 377 0 SHEET 2 F 6 PHE A 382 CYS A 385 -1 O PHE A 383 N PHE A 376 SHEET 3 F 6 ILE A 414 LYS A 421 -1 O LYS A 421 N PHE A 382 SHEET 4 F 6 ALA A 329 SER A 334 -1 N VAL A 333 O ILE A 414 SHEET 5 F 6 VAL A 292 ASN A 301 -1 N GLN A 293 O SER A 334 SHEET 6 F 6 GLY A 441 ILE A 449 -1 O CYS A 445 N CYS A 296 SHEET 1 G 2 LYS A 305 ILE A 307 0 SHEET 2 G 2 PHE A 316 ALA A 318 -1 O PHE A 316 N ILE A 307 SHEET 1 H 5 PHE B 9 VAL B 13 0 SHEET 2 H 5 THR B 102 VAL B 106 1 O ILE B 105 N VAL B 11 SHEET 3 H 5 ALA B 84 ASP B 92 -1 N ALA B 84 O LEU B 104 SHEET 4 H 5 ARG B 31 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 H 5 SER B 45 ILE B 48 -1 O ILE B 48 N TRP B 35 SHEET 1 I 3 ALA B 19 CYS B 23 0 SHEET 2 I 3 ALA B 71 ILE B 75 -1 O ILE B 75 N ALA B 19 SHEET 3 I 3 PHE B 62 GLY B 64 -1 N SER B 63 O THR B 74 SHEET 1 J 4 SER B 115 PHE B 119 0 SHEET 2 J 4 ALA B 131 SER B 138 -1 O LEU B 136 N THR B 117 SHEET 3 J 4 ALA B 175 LEU B 181 -1 O SER B 177 N CYS B 135 SHEET 4 J 4 VAL B 160 THR B 162 -1 N GLU B 161 O TYR B 178 SHEET 1 K 4 SER B 154 PRO B 155 0 SHEET 2 K 4 THR B 146 ALA B 151 -1 N ALA B 151 O SER B 154 SHEET 3 K 4 TYR B 192 HIS B 198 -1 O THR B 197 N THR B 146 SHEET 4 K 4 SER B 201 VAL B 207 -1 O SER B 201 N HIS B 198 SHEET 1 L 4 HIS C 3 SER C 7 0 SHEET 2 L 4 LEU C 18 SER C 25 -1 O ASN C 23 N GLN C 5 SHEET 3 L 4 LEU C 77 LEU C 82 -1 O LEU C 82 N LEU C 18 SHEET 4 L 4 VAL C 67 ASP C 72 -1 N ASP C 72 O LEU C 77 SHEET 1 M 6 LEU C 11 VAL C 12 0 SHEET 2 M 6 THR C 105 VAL C 109 1 O THR C 108 N VAL C 12 SHEET 3 M 6 ALA C 88 ARG C 100 -1 N TYR C 90 O THR C 105 SHEET 4 M 6 TYR C 33 GLN C 39 -1 N ILE C 37 O TYR C 91 SHEET 5 M 6 GLU C 46 VAL C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 M 6 ASN C 58 TYR C 59 -1 O ASN C 58 N TYR C 50 SHEET 1 N 4 LEU C 11 VAL C 12 0 SHEET 2 N 4 THR C 105 VAL C 109 1 O THR C 108 N VAL C 12 SHEET 3 N 4 ALA C 88 ARG C 100 -1 N TYR C 90 O THR C 105 SHEET 4 N 4 PHE C 100K TRP C 101 -1 O TYR C 100O N LYS C 96 SHEET 1 O 4 SER C 118 LEU C 122 0 SHEET 2 O 4 THR C 133 TYR C 143 -1 O LYS C 141 N SER C 118 SHEET 3 O 4 TYR C 174 PRO C 183 -1 O LEU C 176 N VAL C 140 SHEET 4 O 4 HIS C 162 THR C 163 -1 N HIS C 162 O VAL C 179 SHEET 1 P 4 SER C 118 LEU C 122 0 SHEET 2 P 4 THR C 133 TYR C 143 -1 O LYS C 141 N SER C 118 SHEET 3 P 4 TYR C 174 PRO C 183 -1 O LEU C 176 N VAL C 140 SHEET 4 P 4 VAL C 167 LEU C 168 -1 N VAL C 167 O SER C 175 SHEET 1 Q 3 THR C 149 TRP C 152 0 SHEET 2 Q 3 ILE C 193 HIS C 198 -1 O ASN C 195 N SER C 151 SHEET 3 Q 3 THR C 203 ARG C 208 -1 O THR C 203 N HIS C 198 SHEET 1 R 4 VAL D 3 LYS D 7 0 SHEET 2 R 4 VAL D 93 ALA D 102 1 O PHE D 98 N GLY D 6 SHEET 3 R 4 THR D 81 VAL D 86 -1 N TYR D 82 O VAL D 93 SHEET 4 R 4 GLN D 89 LYS D 90 -1 O GLN D 89 N VAL D 86 SHEET 1 S 7 LEU D 44 LYS D 46 0 SHEET 2 S 7 LYS D 35 ASN D 39 -1 N GLY D 38 O THR D 45 SHEET 3 S 7 HIS D 27 LYS D 29 -1 N TRP D 28 O LEU D 37 SHEET 4 S 7 THR D 81 VAL D 86 -1 O GLU D 85 N HIS D 27 SHEET 5 S 7 VAL D 93 ALA D 102 -1 O VAL D 93 N TYR D 82 SHEET 6 S 7 LEU D 114 GLU D 119 -1 O THR D 117 N THR D 101 SHEET 7 S 7 THR D 143 VAL D 146 -1 O VAL D 146 N LEU D 114 SHEET 1 T 3 VAL D 12 LEU D 14 0 SHEET 2 T 3 LEU D 69 ILE D 71 -1 O LEU D 69 N LEU D 14 SHEET 3 T 3 ALA D 55 ASP D 56 -1 N ASP D 56 O ILE D 70 SHEET 1 U 4 ASN D 137 GLN D 139 0 SHEET 2 U 4 SER D 127 ARG D 131 -1 N CYS D 130 O ILE D 138 SHEET 3 U 4 GLY D 155 GLN D 163 -1 O THR D 160 N GLN D 129 SHEET 4 U 4 LYS D 166 ILE D 174 -1 O LYS D 166 N GLN D 163 SHEET 1 V 4 TRP E 45 ASP E 47 0 SHEET 2 V 4 LYS E 487 ILE E 491 -1 O LYS E 490 N LYS E 46 SHEET 3 V 4 PHE E 223 CYS E 228 -1 N ALA E 224 O VAL E 489 SHEET 4 V 4 VAL E 242 VAL E 245 -1 O VAL E 245 N ILE E 225 SHEET 1 W 2 PHE E 53 ALA E 55 0 SHEET 2 W 2 HIS E 216 CYS E 218 -1 O CYS E 218 N PHE E 53 SHEET 1 X 3 GLN E 130 THR E 132 0 SHEET 2 X 3 LEU E 154 THR E 162 -1 O SER E 158 N GLN E 130 SHEET 3 X 3 LYS E 169 TYR E 177 -1 O SER E 174 N CYS E 157 SHEET 1 Y 3 ILE E 201 THR E 202 0 SHEET 2 Y 3 GLN E 432 MET E 434 1 O GLN E 432 N ILE E 201 SHEET 3 Y 3 ILE E 423 ASN E 425 -1 N ILE E 424 O ALA E 433 SHEET 1 Z 6 MET E 271 SER E 274 0 SHEET 2 Z 6 ILE E 284 GLN E 287 -1 O GLN E 287 N MET E 271 SHEET 3 Z 6 LEU E 452 ASP E 457 -1 O LEU E 452 N VAL E 286 SHEET 4 Z 6 THR E 465 PRO E 470 -1 O ARG E 469 N THR E 455 SHEET 5 Z 6 ILE E 358 ARG E 360 1 N ARG E 360 O GLU E 466 SHEET 6 Z 6 THR E 394 TRP E 395 -1 O TRP E 395 N ILE E 359 SHEET 1 AA 6 PHE E 376 ASN E 377 0 SHEET 2 AA 6 PHE E 382 CYS E 385 -1 O PHE E 383 N PHE E 376 SHEET 3 AA 6 ILE E 414 LYS E 421 -1 O LYS E 421 N PHE E 382 SHEET 4 AA 6 ALA E 329 SER E 334 -1 N VAL E 333 O ILE E 414 SHEET 5 AA 6 VAL E 292 ASN E 301 -1 N GLN E 293 O SER E 334 SHEET 6 AA 6 GLY E 441 ILE E 449 -1 O CYS E 445 N CYS E 296 SHEET 1 AB 2 LYS E 305 ILE E 307 0 SHEET 2 AB 2 PHE E 316 ALA E 318 -1 O PHE E 316 N ILE E 307 SHEET 1 AC 4 TRP I 45 ASP I 47 0 SHEET 2 AC 4 LYS I 487 ILE I 491 -1 O LYS I 490 N LYS I 46 SHEET 3 AC 4 PHE I 223 CYS I 228 -1 N ALA I 224 O VAL I 489 SHEET 4 AC 4 VAL I 242 VAL I 245 -1 O VAL I 245 N ILE I 225 SHEET 1 AD 2 PHE I 53 ALA I 55 0 SHEET 2 AD 2 HIS I 216 CYS I 218 -1 O CYS I 218 N PHE I 53 SHEET 1 AE 3 GLN I 130 THR I 132 0 SHEET 2 AE 3 LEU I 154 THR I 162 -1 O SER I 158 N GLN I 130 SHEET 3 AE 3 LYS I 169 TYR I 177 -1 O SER I 174 N CYS I 157 SHEET 1 AF 3 ILE I 201 THR I 202 0 SHEET 2 AF 3 GLN I 432 MET I 434 1 O GLN I 432 N ILE I 201 SHEET 3 AF 3 ILE I 423 ASN I 425 -1 N ILE I 424 O ALA I 433 SHEET 1 AG 6 MET I 271 SER I 274 0 SHEET 2 AG 6 ILE I 284 GLN I 287 -1 O GLN I 287 N MET I 271 SHEET 3 AG 6 LEU I 452 ASP I 457 -1 O LEU I 452 N VAL I 286 SHEET 4 AG 6 THR I 465 PRO I 470 -1 O ARG I 469 N THR I 455 SHEET 5 AG 6 ILE I 358 ARG I 360 1 N ARG I 360 O GLU I 466 SHEET 6 AG 6 THR I 394 TRP I 395 -1 O TRP I 395 N ILE I 359 SHEET 1 AH 6 PHE I 376 ASN I 377 0 SHEET 2 AH 6 PHE I 382 CYS I 385 -1 O PHE I 383 N PHE I 376 SHEET 3 AH 6 ILE I 414 LYS I 421 -1 O LYS I 421 N PHE I 382 SHEET 4 AH 6 ALA I 329 SER I 334 -1 N VAL I 333 O ILE I 414 SHEET 5 AH 6 VAL I 292 ASN I 301 -1 N GLN I 293 O SER I 334 SHEET 6 AH 6 GLY I 441 ILE I 449 -1 O CYS I 445 N CYS I 296 SHEET 1 AI 2 LYS I 305 ILE I 307 0 SHEET 2 AI 2 PHE I 316 ALA I 318 -1 O PHE I 316 N ILE I 307 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 3 CYS A 126 CYS A 196 1555 1555 2.03 SSBOND 4 CYS A 131 CYS A 157 1555 1555 2.04 SSBOND 5 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 6 CYS A 228 CYS A 239 1555 1555 2.03 SSBOND 7 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 8 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 9 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 10 CYS B 23 CYS B 88 1555 1555 2.03 SSBOND 11 CYS B 135 CYS B 194 1555 1555 2.03 SSBOND 12 CYS C 22 CYS C 92 1555 1555 2.04 SSBOND 13 CYS C 138 CYS C 194 1555 1555 2.03 SSBOND 14 CYS D 16 CYS D 84 1555 1555 2.03 SSBOND 15 CYS D 130 CYS D 159 1555 1555 2.03 SSBOND 16 CYS E 54 CYS E 74 1555 1555 2.03 SSBOND 17 CYS E 119 CYS E 205 1555 1555 2.03 SSBOND 18 CYS E 126 CYS E 196 1555 1555 2.03 SSBOND 19 CYS E 131 CYS E 157 1555 1555 2.04 SSBOND 20 CYS E 218 CYS E 247 1555 1555 2.03 SSBOND 21 CYS E 228 CYS E 239 1555 1555 2.03 SSBOND 22 CYS E 296 CYS E 331 1555 1555 2.04 SSBOND 23 CYS E 378 CYS E 445 1555 1555 2.03 SSBOND 24 CYS E 385 CYS E 418 1555 1555 2.03 SSBOND 25 CYS I 54 CYS I 74 1555 1555 2.03 SSBOND 26 CYS I 119 CYS I 205 1555 1555 2.03 SSBOND 27 CYS I 126 CYS I 196 1555 1555 2.03 SSBOND 28 CYS I 131 CYS I 157 1555 1555 2.04 SSBOND 29 CYS I 218 CYS I 247 1555 1555 2.03 SSBOND 30 CYS I 228 CYS I 239 1555 1555 2.03 SSBOND 31 CYS I 296 CYS I 331 1555 1555 2.03 SSBOND 32 CYS I 378 CYS I 445 1555 1555 2.03 SSBOND 33 CYS I 385 CYS I 418 1555 1555 2.03 CISPEP 1 THR A 123 PRO A 124 0 -28.20 CISPEP 2 TYR B 141 PRO B 142 0 -3.63 CISPEP 3 PHE C 144 PRO C 145 0 -6.53 CISPEP 4 GLU C 146 PRO C 147 0 0.33 CISPEP 5 THR E 123 PRO E 124 0 -28.27 CISPEP 6 THR I 123 PRO I 124 0 -28.22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000