data_3JPW # _entry.id 3JPW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JPW pdb_00003jpw 10.2210/pdb3jpw/pdb RCSB RCSB055009 ? ? WWPDB D_1000055009 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3JPY _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3JPW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Karakas, E.' 1 'Simorowski, N.' 2 'Furukawa, H.' 3 # _citation.id primary _citation.title 'Structure of the zinc-bound amino-terminal domain of the NMDA receptor NR2B subunit.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 28 _citation.page_first 3910 _citation.page_last 3920 _citation.year 2009 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19910922 _citation.pdbx_database_id_DOI 10.1038/emboj.2009.338 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Karakas, E.' 1 ? primary 'Simorowski, N.' 2 ? primary 'Furukawa, H.' 3 ? # _cell.entry_id 3JPW _cell.length_a 142.975 _cell.length_b 142.975 _cell.length_c 89.263 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JPW _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutamate [NMDA] receptor subunit epsilon-2' 41280.820 1 ? N348D 'Amino terminal domain' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 17 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'N-methyl D-aspartate receptor subtype 2B, NMDAR2B, NR2B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQI LDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIE NSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPS EFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSF SEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRM ; _entity_poly.pdbx_seq_one_letter_code_can ;PPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQI LDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIE NSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPS EFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSF SEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 PRO n 1 3 SER n 1 4 ILE n 1 5 GLY n 1 6 ILE n 1 7 ALA n 1 8 VAL n 1 9 ILE n 1 10 LEU n 1 11 VAL n 1 12 GLY n 1 13 THR n 1 14 SER n 1 15 ASP n 1 16 GLU n 1 17 VAL n 1 18 ALA n 1 19 ILE n 1 20 LYS n 1 21 ASP n 1 22 ALA n 1 23 HIS n 1 24 GLU n 1 25 LYS n 1 26 ASP n 1 27 ASP n 1 28 PHE n 1 29 HIS n 1 30 HIS n 1 31 LEU n 1 32 SER n 1 33 VAL n 1 34 VAL n 1 35 PRO n 1 36 ARG n 1 37 VAL n 1 38 GLU n 1 39 LEU n 1 40 VAL n 1 41 ALA n 1 42 MET n 1 43 ASN n 1 44 GLU n 1 45 THR n 1 46 ASP n 1 47 PRO n 1 48 LYS n 1 49 SER n 1 50 ILE n 1 51 ILE n 1 52 THR n 1 53 ARG n 1 54 ILE n 1 55 CYS n 1 56 ASP n 1 57 LEU n 1 58 MET n 1 59 SER n 1 60 ASP n 1 61 ARG n 1 62 LYS n 1 63 ILE n 1 64 GLN n 1 65 GLY n 1 66 VAL n 1 67 VAL n 1 68 PHE n 1 69 ALA n 1 70 ASP n 1 71 ASP n 1 72 THR n 1 73 ASP n 1 74 GLN n 1 75 GLU n 1 76 ALA n 1 77 ILE n 1 78 ALA n 1 79 GLN n 1 80 ILE n 1 81 LEU n 1 82 ASP n 1 83 PHE n 1 84 ILE n 1 85 SER n 1 86 ALA n 1 87 GLN n 1 88 THR n 1 89 LEU n 1 90 THR n 1 91 PRO n 1 92 ILE n 1 93 LEU n 1 94 GLY n 1 95 ILE n 1 96 HIS n 1 97 GLY n 1 98 GLY n 1 99 SER n 1 100 SER n 1 101 MET n 1 102 ILE n 1 103 MET n 1 104 ALA n 1 105 ASP n 1 106 LYS n 1 107 ASP n 1 108 GLU n 1 109 SER n 1 110 SER n 1 111 MET n 1 112 PHE n 1 113 PHE n 1 114 GLN n 1 115 PHE n 1 116 GLY n 1 117 PRO n 1 118 SER n 1 119 ILE n 1 120 GLU n 1 121 GLN n 1 122 GLN n 1 123 ALA n 1 124 SER n 1 125 VAL n 1 126 MET n 1 127 LEU n 1 128 ASN n 1 129 ILE n 1 130 MET n 1 131 GLU n 1 132 GLU n 1 133 TYR n 1 134 ASP n 1 135 TRP n 1 136 TYR n 1 137 ILE n 1 138 PHE n 1 139 SER n 1 140 ILE n 1 141 VAL n 1 142 THR n 1 143 THR n 1 144 TYR n 1 145 PHE n 1 146 PRO n 1 147 GLY n 1 148 TYR n 1 149 GLN n 1 150 ASP n 1 151 PHE n 1 152 VAL n 1 153 ASN n 1 154 LYS n 1 155 ILE n 1 156 ARG n 1 157 SER n 1 158 THR n 1 159 ILE n 1 160 GLU n 1 161 ASN n 1 162 SER n 1 163 PHE n 1 164 VAL n 1 165 GLY n 1 166 TRP n 1 167 GLU n 1 168 LEU n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LEU n 1 173 LEU n 1 174 LEU n 1 175 ASP n 1 176 MET n 1 177 SER n 1 178 LEU n 1 179 ASP n 1 180 ASP n 1 181 GLY n 1 182 ASP n 1 183 SER n 1 184 LYS n 1 185 ILE n 1 186 GLN n 1 187 ASN n 1 188 GLN n 1 189 LEU n 1 190 LYS n 1 191 LYS n 1 192 LEU n 1 193 GLN n 1 194 SER n 1 195 PRO n 1 196 ILE n 1 197 ILE n 1 198 LEU n 1 199 LEU n 1 200 TYR n 1 201 CYS n 1 202 THR n 1 203 LYS n 1 204 GLU n 1 205 GLU n 1 206 ALA n 1 207 THR n 1 208 TYR n 1 209 ILE n 1 210 PHE n 1 211 GLU n 1 212 VAL n 1 213 ALA n 1 214 ASN n 1 215 SER n 1 216 VAL n 1 217 GLY n 1 218 LEU n 1 219 THR n 1 220 GLY n 1 221 TYR n 1 222 GLY n 1 223 TYR n 1 224 THR n 1 225 TRP n 1 226 ILE n 1 227 VAL n 1 228 PRO n 1 229 SER n 1 230 LEU n 1 231 VAL n 1 232 ALA n 1 233 GLY n 1 234 ASP n 1 235 THR n 1 236 ASP n 1 237 THR n 1 238 VAL n 1 239 PRO n 1 240 SER n 1 241 GLU n 1 242 PHE n 1 243 PRO n 1 244 THR n 1 245 GLY n 1 246 LEU n 1 247 ILE n 1 248 SER n 1 249 VAL n 1 250 SER n 1 251 TYR n 1 252 ASP n 1 253 GLU n 1 254 TRP n 1 255 ASP n 1 256 TYR n 1 257 GLY n 1 258 LEU n 1 259 PRO n 1 260 ALA n 1 261 ARG n 1 262 VAL n 1 263 ARG n 1 264 ASP n 1 265 GLY n 1 266 ILE n 1 267 ALA n 1 268 ILE n 1 269 ILE n 1 270 THR n 1 271 THR n 1 272 ALA n 1 273 ALA n 1 274 SER n 1 275 ASP n 1 276 MET n 1 277 LEU n 1 278 SER n 1 279 GLU n 1 280 HIS n 1 281 SER n 1 282 PHE n 1 283 ILE n 1 284 PRO n 1 285 GLU n 1 286 PRO n 1 287 LYS n 1 288 SER n 1 289 SER n 1 290 CYS n 1 291 TYR n 1 292 ASN n 1 293 THR n 1 294 HIS n 1 295 GLU n 1 296 LYS n 1 297 ARG n 1 298 ILE n 1 299 TYR n 1 300 GLN n 1 301 SER n 1 302 ASN n 1 303 MET n 1 304 LEU n 1 305 ASN n 1 306 ARG n 1 307 TYR n 1 308 LEU n 1 309 ILE n 1 310 ASN n 1 311 VAL n 1 312 THR n 1 313 PHE n 1 314 GLU n 1 315 GLY n 1 316 ARG n 1 317 ASP n 1 318 LEU n 1 319 SER n 1 320 PHE n 1 321 SER n 1 322 GLU n 1 323 ASP n 1 324 GLY n 1 325 TYR n 1 326 GLN n 1 327 MET n 1 328 HIS n 1 329 PRO n 1 330 LYS n 1 331 LEU n 1 332 VAL n 1 333 ILE n 1 334 ILE n 1 335 LEU n 1 336 LEU n 1 337 ASN n 1 338 LYS n 1 339 GLU n 1 340 ARG n 1 341 LYS n 1 342 TRP n 1 343 GLU n 1 344 ARG n 1 345 VAL n 1 346 GLY n 1 347 LYS n 1 348 TRP n 1 349 LYS n 1 350 ASP n 1 351 LYS n 1 352 SER n 1 353 LEU n 1 354 GLN n 1 355 MET n 1 356 LYS n 1 357 TYR n 1 358 TYR n 1 359 VAL n 1 360 TRP n 1 361 PRO n 1 362 ARG n 1 363 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'brown rat,rat,rats' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Grin2b _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NMDE2_RAT _struct_ref.pdbx_db_accession Q00960 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQI LDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIE NSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPS EFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLSF SEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRM ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3JPW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 363 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00960 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 394 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 394 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3JPW _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 317 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q00960 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 348 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 348 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JPW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3.3M NaCl, 2% PEG400, 0.1M MgCl2, 0.1M acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3JPW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 25955 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.4 _reflns.B_iso_Wilson_estimate 82.120 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs 0.767 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3JPW _refine.ls_number_reflns_obs 25898 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.931 _refine.ls_d_res_high 2.803 _refine.ls_percent_reflns_obs 99.22 _refine.ls_R_factor_obs 0.1986 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1968 _refine.ls_R_factor_R_free 0.2312 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.17 _refine.ls_number_reflns_R_free 1338 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 92.215 _refine.aniso_B[1][1] -19.840 _refine.aniso_B[2][2] -19.840 _refine.aniso_B[3][3] 39.680 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.306 _refine.solvent_model_param_bsol 62.136 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.78 _refine.pdbx_overall_phase_error 27.71 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2772 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 2836 _refine_hist.d_res_high 2.803 _refine_hist.d_res_low 28.931 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 2879 'X-RAY DIFFRACTION' ? f_angle_d 1.218 ? ? 3933 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.378 ? ? 1009 'X-RAY DIFFRACTION' ? f_chiral_restr 0.077 ? ? 458 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 499 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.8030 2.9031 2291 0.3254 94.00 0.3198 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.9031 3.0193 2400 0.3020 99.00 0.3499 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.0193 3.1565 2429 0.2831 100.00 0.2928 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.1565 3.3227 2483 0.2369 100.00 0.3265 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.3227 3.5305 2435 0.2152 100.00 0.2571 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.5305 3.8026 2464 0.1954 100.00 0.2365 . . 135 . . . . 'X-RAY DIFFRACTION' . 3.8026 4.1842 2472 0.1571 100.00 0.1875 . . 140 . . . . 'X-RAY DIFFRACTION' . 4.1842 4.7873 2481 0.1437 100.00 0.1557 . . 130 . . . . 'X-RAY DIFFRACTION' . 4.7873 6.0226 2514 0.1687 100.00 0.1964 . . 136 . . . . 'X-RAY DIFFRACTION' . 6.0226 28.9323 2591 0.2103 99.00 0.2565 . . 115 . . . . # _struct.entry_id 3JPW _struct.title 'Crystal structure of amino terminal domain of the NMDA receptor subunit NR2B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JPW _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;NMDA receptor, amino terminal domain, phenylethanolamine, Cell junction, Cell membrane, Glycoprotein, Ion transport, Ionic channel, Magnesium, Membrane, Phosphoprotein, Postsynaptic cell membrane, Receptor, Synapse, Transmembrane, Transport, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 4 ? V N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 22 ? GLU A 24 ? ALA A 53 GLU A 55 5 ? 3 HELX_P HELX_P2 2 PRO A 47 ? ASP A 60 ? PRO A 78 ASP A 91 1 ? 14 HELX_P HELX_P3 3 ALA A 76 ? THR A 88 ? ALA A 107 THR A 119 1 ? 13 HELX_P HELX_P4 4 GLY A 97 ? SER A 100 ? GLY A 128 SER A 131 5 ? 4 HELX_P HELX_P5 5 ILE A 119 ? GLU A 131 ? ILE A 150 GLU A 162 1 ? 13 HELX_P HELX_P6 6 TYR A 148 ? GLU A 160 ? TYR A 179 GLU A 191 1 ? 13 HELX_P HELX_P7 7 GLN A 186 ? LEU A 189 ? GLN A 217 LEU A 220 1 ? 4 HELX_P HELX_P8 8 LYS A 203 ? ASN A 214 ? LYS A 234 ASN A 245 1 ? 12 HELX_P HELX_P9 9 SER A 229 ? ALA A 232 ? SER A 260 ALA A 263 1 ? 4 HELX_P HELX_P10 10 LEU A 258 ? HIS A 280 ? LEU A 289 HIS A 311 1 ? 23 HELX_P HELX_P11 11 ILE A 298 ? LEU A 308 ? ILE A 329 LEU A 339 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 290 SG ? ? A CYS 86 A CYS 321 1_555 ? ? ? ? ? ? ? 2.054 ? ? covale1 covale one ? A ASN 43 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 74 A NAG 501 1_555 ? ? ? ? ? ? ? 1.435 ? N-Glycosylation covale2 covale one ? A ASN 310 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 341 A NAG 502 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation metalc1 metalc ? ? A SER 100 O ? ? ? 1_555 U NA . NA ? ? A SER 131 A NA 701 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc2 metalc ? ? A PHE 115 O ? ? ? 1_555 U NA . NA ? ? A PHE 146 A NA 701 1_555 ? ? ? ? ? ? ? 2.306 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 8 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 36 ? MET A 42 ? ARG A 67 MET A 73 A 2 GLY A 5 ? VAL A 11 ? GLY A 36 VAL A 42 A 3 VAL A 66 ? ASP A 70 ? VAL A 97 ASP A 101 A 4 ILE A 92 ? HIS A 96 ? ILE A 123 HIS A 127 A 5 PHE A 112 ? GLN A 114 ? PHE A 143 GLN A 145 B 1 GLU A 167 ? LEU A 173 ? GLU A 198 LEU A 204 B 2 ILE A 137 ? THR A 142 ? ILE A 168 THR A 173 B 3 ILE A 196 ? TYR A 200 ? ILE A 227 TYR A 231 B 4 THR A 224 ? VAL A 227 ? THR A 255 VAL A 258 B 5 LEU A 246 ? SER A 250 ? LEU A 277 SER A 281 B 6 LEU A 331 ? LEU A 336 ? LEU A 362 LEU A 367 B 7 TRP A 342 ? TRP A 348 ? TRP A 373 TRP A 379 B 8 LEU A 353 ? MET A 355 ? LEU A 384 MET A 386 C 1 THR A 312 ? PHE A 313 ? THR A 343 PHE A 344 C 2 ARG A 316 ? ASP A 317 ? ARG A 347 ASP A 348 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 40 ? O VAL A 71 N VAL A 8 ? N VAL A 39 A 2 3 N ALA A 7 ? N ALA A 38 O VAL A 67 ? O VAL A 98 A 3 4 N VAL A 66 ? N VAL A 97 O LEU A 93 ? O LEU A 124 A 4 5 N GLY A 94 ? N GLY A 125 O PHE A 113 ? O PHE A 144 B 1 2 O LEU A 172 ? O LEU A 203 N ILE A 140 ? N ILE A 171 B 2 3 N VAL A 141 ? N VAL A 172 O LEU A 198 ? O LEU A 229 B 3 4 N ILE A 197 ? N ILE A 228 O THR A 224 ? O THR A 255 B 4 5 N TRP A 225 ? N TRP A 256 O ILE A 247 ? O ILE A 278 B 5 6 N SER A 248 ? N SER A 279 O ILE A 334 ? O ILE A 365 B 6 7 N LEU A 335 ? N LEU A 366 O GLU A 343 ? O GLU A 374 B 7 8 N LYS A 347 ? N LYS A 378 O GLN A 354 ? O GLN A 385 C 1 2 N PHE A 313 ? N PHE A 344 O ARG A 316 ? O ARG A 347 # _atom_sites.entry_id 3JPW _atom_sites.fract_transf_matrix[1][1] 0.006994 _atom_sites.fract_transf_matrix[1][2] 0.004038 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008076 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011203 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _database_PDB_caveat.text 'NAG A 501 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 32 32 PRO PRO A . n A 1 2 PRO 2 33 33 PRO PRO A . n A 1 3 SER 3 34 34 SER SER A . n A 1 4 ILE 4 35 35 ILE ILE A . n A 1 5 GLY 5 36 36 GLY GLY A . n A 1 6 ILE 6 37 37 ILE ILE A . n A 1 7 ALA 7 38 38 ALA ALA A . n A 1 8 VAL 8 39 39 VAL VAL A . n A 1 9 ILE 9 40 40 ILE ILE A . n A 1 10 LEU 10 41 41 LEU LEU A . n A 1 11 VAL 11 42 42 VAL VAL A . n A 1 12 GLY 12 43 43 GLY GLY A . n A 1 13 THR 13 44 44 THR THR A . n A 1 14 SER 14 45 45 SER SER A . n A 1 15 ASP 15 46 46 ASP ASP A . n A 1 16 GLU 16 47 47 GLU GLU A . n A 1 17 VAL 17 48 48 VAL VAL A . n A 1 18 ALA 18 49 49 ALA ALA A . n A 1 19 ILE 19 50 50 ILE ILE A . n A 1 20 LYS 20 51 51 LYS LYS A . n A 1 21 ASP 21 52 52 ASP ASP A . n A 1 22 ALA 22 53 53 ALA ALA A . n A 1 23 HIS 23 54 54 HIS HIS A . n A 1 24 GLU 24 55 55 GLU GLU A . n A 1 25 LYS 25 56 56 LYS LYS A . n A 1 26 ASP 26 57 57 ASP ASP A . n A 1 27 ASP 27 58 58 ASP ASP A . n A 1 28 PHE 28 59 59 PHE PHE A . n A 1 29 HIS 29 60 60 HIS HIS A . n A 1 30 HIS 30 61 61 HIS HIS A . n A 1 31 LEU 31 62 62 LEU LEU A . n A 1 32 SER 32 63 63 SER SER A . n A 1 33 VAL 33 64 64 VAL VAL A . n A 1 34 VAL 34 65 65 VAL VAL A . n A 1 35 PRO 35 66 66 PRO PRO A . n A 1 36 ARG 36 67 67 ARG ARG A . n A 1 37 VAL 37 68 68 VAL VAL A . n A 1 38 GLU 38 69 69 GLU GLU A . n A 1 39 LEU 39 70 70 LEU LEU A . n A 1 40 VAL 40 71 71 VAL VAL A . n A 1 41 ALA 41 72 72 ALA ALA A . n A 1 42 MET 42 73 73 MET MET A . n A 1 43 ASN 43 74 74 ASN ASN A . n A 1 44 GLU 44 75 75 GLU GLU A . n A 1 45 THR 45 76 76 THR THR A . n A 1 46 ASP 46 77 77 ASP ASP A . n A 1 47 PRO 47 78 78 PRO PRO A . n A 1 48 LYS 48 79 79 LYS LYS A . n A 1 49 SER 49 80 80 SER SER A . n A 1 50 ILE 50 81 81 ILE ILE A . n A 1 51 ILE 51 82 82 ILE ILE A . n A 1 52 THR 52 83 83 THR THR A . n A 1 53 ARG 53 84 84 ARG ARG A . n A 1 54 ILE 54 85 85 ILE ILE A . n A 1 55 CYS 55 86 86 CYS CYS A . n A 1 56 ASP 56 87 87 ASP ASP A . n A 1 57 LEU 57 88 88 LEU LEU A . n A 1 58 MET 58 89 89 MET MET A . n A 1 59 SER 59 90 90 SER SER A . n A 1 60 ASP 60 91 91 ASP ASP A . n A 1 61 ARG 61 92 92 ARG ARG A . n A 1 62 LYS 62 93 93 LYS LYS A . n A 1 63 ILE 63 94 94 ILE ILE A . n A 1 64 GLN 64 95 95 GLN GLN A . n A 1 65 GLY 65 96 96 GLY GLY A . n A 1 66 VAL 66 97 97 VAL VAL A . n A 1 67 VAL 67 98 98 VAL VAL A . n A 1 68 PHE 68 99 99 PHE PHE A . n A 1 69 ALA 69 100 100 ALA ALA A . n A 1 70 ASP 70 101 101 ASP ASP A . n A 1 71 ASP 71 102 102 ASP ASP A . n A 1 72 THR 72 103 103 THR THR A . n A 1 73 ASP 73 104 104 ASP ASP A . n A 1 74 GLN 74 105 105 GLN GLN A . n A 1 75 GLU 75 106 106 GLU GLU A . n A 1 76 ALA 76 107 107 ALA ALA A . n A 1 77 ILE 77 108 108 ILE ILE A . n A 1 78 ALA 78 109 109 ALA ALA A . n A 1 79 GLN 79 110 110 GLN GLN A . n A 1 80 ILE 80 111 111 ILE ILE A . n A 1 81 LEU 81 112 112 LEU LEU A . n A 1 82 ASP 82 113 113 ASP ASP A . n A 1 83 PHE 83 114 114 PHE PHE A . n A 1 84 ILE 84 115 115 ILE ILE A . n A 1 85 SER 85 116 116 SER SER A . n A 1 86 ALA 86 117 117 ALA ALA A . n A 1 87 GLN 87 118 118 GLN GLN A . n A 1 88 THR 88 119 119 THR THR A . n A 1 89 LEU 89 120 120 LEU LEU A . n A 1 90 THR 90 121 121 THR THR A . n A 1 91 PRO 91 122 122 PRO PRO A . n A 1 92 ILE 92 123 123 ILE ILE A . n A 1 93 LEU 93 124 124 LEU LEU A . n A 1 94 GLY 94 125 125 GLY GLY A . n A 1 95 ILE 95 126 126 ILE ILE A . n A 1 96 HIS 96 127 127 HIS HIS A . n A 1 97 GLY 97 128 128 GLY GLY A . n A 1 98 GLY 98 129 129 GLY GLY A . n A 1 99 SER 99 130 130 SER SER A . n A 1 100 SER 100 131 131 SER SER A . n A 1 101 MET 101 132 132 MET MET A . n A 1 102 ILE 102 133 133 ILE ILE A . n A 1 103 MET 103 134 134 MET MET A . n A 1 104 ALA 104 135 135 ALA ALA A . n A 1 105 ASP 105 136 136 ASP ASP A . n A 1 106 LYS 106 137 137 LYS LYS A . n A 1 107 ASP 107 138 138 ASP ASP A . n A 1 108 GLU 108 139 139 GLU GLU A . n A 1 109 SER 109 140 140 SER SER A . n A 1 110 SER 110 141 141 SER SER A . n A 1 111 MET 111 142 142 MET MET A . n A 1 112 PHE 112 143 143 PHE PHE A . n A 1 113 PHE 113 144 144 PHE PHE A . n A 1 114 GLN 114 145 145 GLN GLN A . n A 1 115 PHE 115 146 146 PHE PHE A . n A 1 116 GLY 116 147 147 GLY GLY A . n A 1 117 PRO 117 148 148 PRO PRO A . n A 1 118 SER 118 149 149 SER SER A . n A 1 119 ILE 119 150 150 ILE ILE A . n A 1 120 GLU 120 151 151 GLU GLU A . n A 1 121 GLN 121 152 152 GLN GLN A . n A 1 122 GLN 122 153 153 GLN GLN A . n A 1 123 ALA 123 154 154 ALA ALA A . n A 1 124 SER 124 155 155 SER SER A . n A 1 125 VAL 125 156 156 VAL VAL A . n A 1 126 MET 126 157 157 MET MET A . n A 1 127 LEU 127 158 158 LEU LEU A . n A 1 128 ASN 128 159 159 ASN ASN A . n A 1 129 ILE 129 160 160 ILE ILE A . n A 1 130 MET 130 161 161 MET MET A . n A 1 131 GLU 131 162 162 GLU GLU A . n A 1 132 GLU 132 163 163 GLU GLU A . n A 1 133 TYR 133 164 164 TYR TYR A . n A 1 134 ASP 134 165 165 ASP ASP A . n A 1 135 TRP 135 166 166 TRP TRP A . n A 1 136 TYR 136 167 167 TYR TYR A . n A 1 137 ILE 137 168 168 ILE ILE A . n A 1 138 PHE 138 169 169 PHE PHE A . n A 1 139 SER 139 170 170 SER SER A . n A 1 140 ILE 140 171 171 ILE ILE A . n A 1 141 VAL 141 172 172 VAL VAL A . n A 1 142 THR 142 173 173 THR THR A . n A 1 143 THR 143 174 174 THR THR A . n A 1 144 TYR 144 175 175 TYR TYR A . n A 1 145 PHE 145 176 176 PHE PHE A . n A 1 146 PRO 146 177 177 PRO PRO A . n A 1 147 GLY 147 178 178 GLY GLY A . n A 1 148 TYR 148 179 179 TYR TYR A . n A 1 149 GLN 149 180 180 GLN GLN A . n A 1 150 ASP 150 181 181 ASP ASP A . n A 1 151 PHE 151 182 182 PHE PHE A . n A 1 152 VAL 152 183 183 VAL VAL A . n A 1 153 ASN 153 184 184 ASN ASN A . n A 1 154 LYS 154 185 185 LYS LYS A . n A 1 155 ILE 155 186 186 ILE ILE A . n A 1 156 ARG 156 187 187 ARG ARG A . n A 1 157 SER 157 188 188 SER SER A . n A 1 158 THR 158 189 189 THR THR A . n A 1 159 ILE 159 190 190 ILE ILE A . n A 1 160 GLU 160 191 191 GLU GLU A . n A 1 161 ASN 161 192 192 ASN ASN A . n A 1 162 SER 162 193 193 SER SER A . n A 1 163 PHE 163 194 194 PHE PHE A . n A 1 164 VAL 164 195 195 VAL VAL A . n A 1 165 GLY 165 196 196 GLY GLY A . n A 1 166 TRP 166 197 197 TRP TRP A . n A 1 167 GLU 167 198 198 GLU GLU A . n A 1 168 LEU 168 199 199 LEU LEU A . n A 1 169 GLU 169 200 200 GLU GLU A . n A 1 170 GLU 170 201 201 GLU GLU A . n A 1 171 VAL 171 202 202 VAL VAL A . n A 1 172 LEU 172 203 203 LEU LEU A . n A 1 173 LEU 173 204 204 LEU LEU A . n A 1 174 LEU 174 205 205 LEU LEU A . n A 1 175 ASP 175 206 206 ASP ASP A . n A 1 176 MET 176 207 207 MET MET A . n A 1 177 SER 177 208 208 SER SER A . n A 1 178 LEU 178 209 209 LEU LEU A . n A 1 179 ASP 179 210 ? ? ? A . n A 1 180 ASP 180 211 ? ? ? A . n A 1 181 GLY 181 212 ? ? ? A . n A 1 182 ASP 182 213 ? ? ? A . n A 1 183 SER 183 214 214 SER SER A . n A 1 184 LYS 184 215 215 LYS LYS A . n A 1 185 ILE 185 216 216 ILE ILE A . n A 1 186 GLN 186 217 217 GLN GLN A . n A 1 187 ASN 187 218 218 ASN ASN A . n A 1 188 GLN 188 219 219 GLN GLN A . n A 1 189 LEU 189 220 220 LEU LEU A . n A 1 190 LYS 190 221 221 LYS LYS A . n A 1 191 LYS 191 222 222 LYS LYS A . n A 1 192 LEU 192 223 223 LEU LEU A . n A 1 193 GLN 193 224 224 GLN GLN A . n A 1 194 SER 194 225 225 SER SER A . n A 1 195 PRO 195 226 226 PRO PRO A . n A 1 196 ILE 196 227 227 ILE ILE A . n A 1 197 ILE 197 228 228 ILE ILE A . n A 1 198 LEU 198 229 229 LEU LEU A . n A 1 199 LEU 199 230 230 LEU LEU A . n A 1 200 TYR 200 231 231 TYR TYR A . n A 1 201 CYS 201 232 232 CYS CYS A . n A 1 202 THR 202 233 233 THR THR A . n A 1 203 LYS 203 234 234 LYS LYS A . n A 1 204 GLU 204 235 235 GLU GLU A . n A 1 205 GLU 205 236 236 GLU GLU A . n A 1 206 ALA 206 237 237 ALA ALA A . n A 1 207 THR 207 238 238 THR THR A . n A 1 208 TYR 208 239 239 TYR TYR A . n A 1 209 ILE 209 240 240 ILE ILE A . n A 1 210 PHE 210 241 241 PHE PHE A . n A 1 211 GLU 211 242 242 GLU GLU A . n A 1 212 VAL 212 243 243 VAL VAL A . n A 1 213 ALA 213 244 244 ALA ALA A . n A 1 214 ASN 214 245 245 ASN ASN A . n A 1 215 SER 215 246 246 SER SER A . n A 1 216 VAL 216 247 247 VAL VAL A . n A 1 217 GLY 217 248 248 GLY GLY A . n A 1 218 LEU 218 249 249 LEU LEU A . n A 1 219 THR 219 250 250 THR THR A . n A 1 220 GLY 220 251 251 GLY GLY A . n A 1 221 TYR 221 252 252 TYR TYR A . n A 1 222 GLY 222 253 253 GLY GLY A . n A 1 223 TYR 223 254 254 TYR TYR A . n A 1 224 THR 224 255 255 THR THR A . n A 1 225 TRP 225 256 256 TRP TRP A . n A 1 226 ILE 226 257 257 ILE ILE A . n A 1 227 VAL 227 258 258 VAL VAL A . n A 1 228 PRO 228 259 259 PRO PRO A . n A 1 229 SER 229 260 260 SER SER A . n A 1 230 LEU 230 261 261 LEU LEU A . n A 1 231 VAL 231 262 262 VAL VAL A . n A 1 232 ALA 232 263 263 ALA ALA A . n A 1 233 GLY 233 264 264 GLY GLY A . n A 1 234 ASP 234 265 265 ASP ASP A . n A 1 235 THR 235 266 266 THR THR A . n A 1 236 ASP 236 267 267 ASP ASP A . n A 1 237 THR 237 268 268 THR THR A . n A 1 238 VAL 238 269 269 VAL VAL A . n A 1 239 PRO 239 270 270 PRO PRO A . n A 1 240 SER 240 271 271 SER SER A . n A 1 241 GLU 241 272 272 GLU GLU A . n A 1 242 PHE 242 273 273 PHE PHE A . n A 1 243 PRO 243 274 274 PRO PRO A . n A 1 244 THR 244 275 275 THR THR A . n A 1 245 GLY 245 276 276 GLY GLY A . n A 1 246 LEU 246 277 277 LEU LEU A . n A 1 247 ILE 247 278 278 ILE ILE A . n A 1 248 SER 248 279 279 SER SER A . n A 1 249 VAL 249 280 280 VAL VAL A . n A 1 250 SER 250 281 281 SER SER A . n A 1 251 TYR 251 282 282 TYR TYR A . n A 1 252 ASP 252 283 283 ASP ASP A . n A 1 253 GLU 253 284 284 GLU GLU A . n A 1 254 TRP 254 285 285 TRP TRP A . n A 1 255 ASP 255 286 286 ASP ASP A . n A 1 256 TYR 256 287 287 TYR TYR A . n A 1 257 GLY 257 288 288 GLY GLY A . n A 1 258 LEU 258 289 289 LEU LEU A . n A 1 259 PRO 259 290 290 PRO PRO A . n A 1 260 ALA 260 291 291 ALA ALA A . n A 1 261 ARG 261 292 292 ARG ARG A . n A 1 262 VAL 262 293 293 VAL VAL A . n A 1 263 ARG 263 294 294 ARG ARG A . n A 1 264 ASP 264 295 295 ASP ASP A . n A 1 265 GLY 265 296 296 GLY GLY A . n A 1 266 ILE 266 297 297 ILE ILE A . n A 1 267 ALA 267 298 298 ALA ALA A . n A 1 268 ILE 268 299 299 ILE ILE A . n A 1 269 ILE 269 300 300 ILE ILE A . n A 1 270 THR 270 301 301 THR THR A . n A 1 271 THR 271 302 302 THR THR A . n A 1 272 ALA 272 303 303 ALA ALA A . n A 1 273 ALA 273 304 304 ALA ALA A . n A 1 274 SER 274 305 305 SER SER A . n A 1 275 ASP 275 306 306 ASP ASP A . n A 1 276 MET 276 307 307 MET MET A . n A 1 277 LEU 277 308 308 LEU LEU A . n A 1 278 SER 278 309 309 SER SER A . n A 1 279 GLU 279 310 310 GLU GLU A . n A 1 280 HIS 280 311 311 HIS HIS A . n A 1 281 SER 281 312 312 SER SER A . n A 1 282 PHE 282 313 313 PHE PHE A . n A 1 283 ILE 283 314 314 ILE ILE A . n A 1 284 PRO 284 315 315 PRO PRO A . n A 1 285 GLU 285 316 316 GLU GLU A . n A 1 286 PRO 286 317 317 PRO PRO A . n A 1 287 LYS 287 318 318 LYS LYS A . n A 1 288 SER 288 319 319 SER SER A . n A 1 289 SER 289 320 320 SER SER A . n A 1 290 CYS 290 321 321 CYS CYS A . n A 1 291 TYR 291 322 322 TYR TYR A . n A 1 292 ASN 292 323 323 ASN ASN A . n A 1 293 THR 293 324 324 THR THR A . n A 1 294 HIS 294 325 325 HIS HIS A . n A 1 295 GLU 295 326 326 GLU GLU A . n A 1 296 LYS 296 327 327 LYS LYS A . n A 1 297 ARG 297 328 328 ARG ARG A . n A 1 298 ILE 298 329 329 ILE ILE A . n A 1 299 TYR 299 330 330 TYR TYR A . n A 1 300 GLN 300 331 331 GLN GLN A . n A 1 301 SER 301 332 332 SER SER A . n A 1 302 ASN 302 333 333 ASN ASN A . n A 1 303 MET 303 334 334 MET MET A . n A 1 304 LEU 304 335 335 LEU LEU A . n A 1 305 ASN 305 336 336 ASN ASN A . n A 1 306 ARG 306 337 337 ARG ARG A . n A 1 307 TYR 307 338 338 TYR TYR A . n A 1 308 LEU 308 339 339 LEU LEU A . n A 1 309 ILE 309 340 340 ILE ILE A . n A 1 310 ASN 310 341 341 ASN ASN A . n A 1 311 VAL 311 342 342 VAL VAL A . n A 1 312 THR 312 343 343 THR THR A . n A 1 313 PHE 313 344 344 PHE PHE A . n A 1 314 GLU 314 345 345 GLU GLU A . n A 1 315 GLY 315 346 346 GLY GLY A . n A 1 316 ARG 316 347 347 ARG ARG A . n A 1 317 ASP 317 348 348 ASP ASP A . n A 1 318 LEU 318 349 349 LEU LEU A . n A 1 319 SER 319 350 350 SER SER A . n A 1 320 PHE 320 351 351 PHE PHE A . n A 1 321 SER 321 352 352 SER SER A . n A 1 322 GLU 322 353 353 GLU GLU A . n A 1 323 ASP 323 354 354 ASP ASP A . n A 1 324 GLY 324 355 355 GLY GLY A . n A 1 325 TYR 325 356 356 TYR TYR A . n A 1 326 GLN 326 357 357 GLN GLN A . n A 1 327 MET 327 358 358 MET MET A . n A 1 328 HIS 328 359 359 HIS HIS A . n A 1 329 PRO 329 360 360 PRO PRO A . n A 1 330 LYS 330 361 361 LYS LYS A . n A 1 331 LEU 331 362 362 LEU LEU A . n A 1 332 VAL 332 363 363 VAL VAL A . n A 1 333 ILE 333 364 364 ILE ILE A . n A 1 334 ILE 334 365 365 ILE ILE A . n A 1 335 LEU 335 366 366 LEU LEU A . n A 1 336 LEU 336 367 367 LEU LEU A . n A 1 337 ASN 337 368 368 ASN ASN A . n A 1 338 LYS 338 369 369 LYS LYS A . n A 1 339 GLU 339 370 370 GLU GLU A . n A 1 340 ARG 340 371 371 ARG ARG A . n A 1 341 LYS 341 372 372 LYS LYS A . n A 1 342 TRP 342 373 373 TRP TRP A . n A 1 343 GLU 343 374 374 GLU GLU A . n A 1 344 ARG 344 375 375 ARG ARG A . n A 1 345 VAL 345 376 376 VAL VAL A . n A 1 346 GLY 346 377 377 GLY GLY A . n A 1 347 LYS 347 378 378 LYS LYS A . n A 1 348 TRP 348 379 379 TRP TRP A . n A 1 349 LYS 349 380 380 LYS LYS A . n A 1 350 ASP 350 381 381 ASP ASP A . n A 1 351 LYS 351 382 382 LYS LYS A . n A 1 352 SER 352 383 383 SER SER A . n A 1 353 LEU 353 384 384 LEU LEU A . n A 1 354 GLN 354 385 385 GLN GLN A . n A 1 355 MET 355 386 386 MET MET A . n A 1 356 LYS 356 387 387 LYS LYS A . n A 1 357 TYR 357 388 388 TYR TYR A . n A 1 358 TYR 358 389 389 TYR TYR A . n A 1 359 VAL 359 390 390 VAL VAL A . n A 1 360 TRP 360 391 391 TRP TRP A . n A 1 361 PRO 361 392 392 PRO PRO A . n A 1 362 ARG 362 393 393 ARG ARG A . n A 1 363 MET 363 394 394 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 501 501 NAG NAG A . C 2 NAG 1 502 502 NAG NAG A . D 3 CL 1 601 601 CL CL A . E 3 CL 1 602 602 CL CL A . F 3 CL 1 603 603 CL CL A . G 3 CL 1 604 604 CL CL A . H 3 CL 1 605 605 CL CL A . I 3 CL 1 606 606 CL CL A . J 3 CL 1 607 607 CL CL A . K 3 CL 1 608 608 CL CL A . L 3 CL 1 609 609 CL CL A . M 3 CL 1 610 610 CL CL A . N 3 CL 1 611 611 CL CL A . O 3 CL 1 612 612 CL CL A . P 3 CL 1 613 613 CL CL A . Q 3 CL 1 614 614 CL CL A . R 3 CL 1 615 615 CL CL A . S 3 CL 1 616 616 CL CL A . T 3 CL 1 617 617 CL CL A . U 4 NA 1 701 701 NA NA A . V 5 HOH 1 1 1 HOH HOH A . V 5 HOH 2 2 2 HOH HOH A . V 5 HOH 3 3 3 HOH HOH A . V 5 HOH 4 4 4 HOH HOH A . V 5 HOH 5 5 5 HOH HOH A . V 5 HOH 6 6 6 HOH HOH A . V 5 HOH 7 7 7 HOH HOH A . V 5 HOH 8 8 8 HOH HOH A . V 5 HOH 9 9 9 HOH HOH A . V 5 HOH 10 10 10 HOH HOH A . V 5 HOH 11 11 11 HOH HOH A . V 5 HOH 12 12 12 HOH HOH A . V 5 HOH 13 13 13 HOH HOH A . V 5 HOH 14 14 14 HOH HOH A . V 5 HOH 15 15 15 HOH HOH A . V 5 HOH 16 16 16 HOH HOH A . V 5 HOH 17 17 17 HOH HOH A . V 5 HOH 18 18 18 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 43 A ASN 74 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 310 A ASN 341 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 7870 ? 2 MORE -356 ? 2 'SSA (A^2)' 28780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 29.7543333333 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id SER _pdbx_struct_conn_angle.ptnr1_label_seq_id 100 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id SER _pdbx_struct_conn_angle.ptnr1_auth_seq_id 131 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id U _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 701 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id PHE _pdbx_struct_conn_angle.ptnr3_label_seq_id 115 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id PHE _pdbx_struct_conn_angle.ptnr3_auth_seq_id 146 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 109.2 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2021-10-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' database_2 12 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.conn_type_id' 6 4 'Structure model' '_struct_conn.id' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.pdbx_role' 10 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 5 'Structure model' '_chem_comp.pdbx_synonyms' 21 5 'Structure model' '_database_2.pdbx_DOI' 22 5 'Structure model' '_database_2.pdbx_database_accession' 23 5 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method MIRAS # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 2 SOLOMON . ? program 'Jan P. Abrahams' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/solomon.html Fortran_77 ? 3 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 DENZO . ? ? ? ? 'data reduction' ? ? ? 7 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 61 ? ? 79.28 -1.55 2 1 ASP A 136 ? ? -96.67 34.66 3 1 THR A 174 ? ? -96.55 -159.33 4 1 GLU A 200 ? ? -72.98 -73.30 5 1 CYS A 232 ? ? -177.85 -168.85 6 1 TYR A 282 ? ? -148.22 28.85 7 1 TYR A 322 ? ? -122.09 -69.95 8 1 HIS A 325 ? ? -55.54 4.73 9 1 GLU A 326 ? ? -67.98 74.73 10 1 LYS A 327 ? ? -114.37 51.18 11 1 ARG A 328 ? ? -92.80 30.28 12 1 ASN A 333 ? ? -39.47 -29.15 13 1 LYS A 380 ? ? -165.45 91.24 14 1 ASP A 381 ? ? 65.72 67.43 15 1 LYS A 382 ? ? 57.80 7.78 16 1 PRO A 392 ? ? -57.92 170.36 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 501 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 45 ? OG ? A SER 14 OG 2 1 Y 1 A LYS 56 ? CG ? A LYS 25 CG 3 1 Y 1 A LYS 56 ? CD ? A LYS 25 CD 4 1 Y 1 A LYS 56 ? CE ? A LYS 25 CE 5 1 Y 1 A LYS 56 ? NZ ? A LYS 25 NZ 6 1 Y 1 A GLU 69 ? CG ? A GLU 38 CG 7 1 Y 1 A GLU 69 ? CD ? A GLU 38 CD 8 1 Y 1 A GLU 69 ? OE1 ? A GLU 38 OE1 9 1 Y 1 A GLU 69 ? OE2 ? A GLU 38 OE2 10 1 Y 1 A LYS 93 ? CG ? A LYS 62 CG 11 1 Y 1 A LYS 93 ? CD ? A LYS 62 CD 12 1 Y 1 A LYS 93 ? CE ? A LYS 62 CE 13 1 Y 1 A LYS 93 ? NZ ? A LYS 62 NZ 14 1 Y 1 A GLU 139 ? CG ? A GLU 108 CG 15 1 Y 1 A GLU 139 ? CD ? A GLU 108 CD 16 1 Y 1 A GLU 139 ? OE1 ? A GLU 108 OE1 17 1 Y 1 A GLU 139 ? OE2 ? A GLU 108 OE2 18 1 Y 1 A GLU 162 ? CG ? A GLU 131 CG 19 1 Y 1 A GLU 162 ? CD ? A GLU 131 CD 20 1 Y 1 A GLU 162 ? OE1 ? A GLU 131 OE1 21 1 Y 1 A GLU 162 ? OE2 ? A GLU 131 OE2 22 1 Y 1 A GLU 191 ? CG ? A GLU 160 CG 23 1 Y 1 A GLU 191 ? CD ? A GLU 160 CD 24 1 Y 1 A GLU 191 ? OE1 ? A GLU 160 OE1 25 1 Y 1 A GLU 191 ? OE2 ? A GLU 160 OE2 26 1 Y 1 A PHE 194 ? CG ? A PHE 163 CG 27 1 Y 1 A PHE 194 ? CD1 ? A PHE 163 CD1 28 1 Y 1 A PHE 194 ? CD2 ? A PHE 163 CD2 29 1 Y 1 A PHE 194 ? CE1 ? A PHE 163 CE1 30 1 Y 1 A PHE 194 ? CE2 ? A PHE 163 CE2 31 1 Y 1 A PHE 194 ? CZ ? A PHE 163 CZ 32 1 Y 1 A LEU 209 ? CG ? A LEU 178 CG 33 1 Y 1 A LEU 209 ? CD1 ? A LEU 178 CD1 34 1 Y 1 A LEU 209 ? CD2 ? A LEU 178 CD2 35 1 Y 1 A SER 214 ? OG ? A SER 183 OG 36 1 Y 1 A LYS 215 ? CG ? A LYS 184 CG 37 1 Y 1 A LYS 215 ? CD ? A LYS 184 CD 38 1 Y 1 A LYS 215 ? CE ? A LYS 184 CE 39 1 Y 1 A LYS 215 ? NZ ? A LYS 184 NZ 40 1 Y 1 A LYS 221 ? CG ? A LYS 190 CG 41 1 Y 1 A LYS 221 ? CD ? A LYS 190 CD 42 1 Y 1 A LYS 221 ? CE ? A LYS 190 CE 43 1 Y 1 A LYS 221 ? NZ ? A LYS 190 NZ 44 1 Y 1 A LYS 222 ? CG ? A LYS 191 CG 45 1 Y 1 A LYS 222 ? CD ? A LYS 191 CD 46 1 Y 1 A LYS 222 ? CE ? A LYS 191 CE 47 1 Y 1 A LYS 222 ? NZ ? A LYS 191 NZ 48 1 Y 1 A SER 312 ? OG ? A SER 281 OG 49 1 Y 1 A GLU 316 ? CG ? A GLU 285 CG 50 1 Y 1 A GLU 316 ? CD ? A GLU 285 CD 51 1 Y 1 A GLU 316 ? OE1 ? A GLU 285 OE1 52 1 Y 1 A GLU 316 ? OE2 ? A GLU 285 OE2 53 1 Y 1 A HIS 325 ? CG ? A HIS 294 CG 54 1 Y 1 A HIS 325 ? ND1 ? A HIS 294 ND1 55 1 Y 1 A HIS 325 ? CD2 ? A HIS 294 CD2 56 1 Y 1 A HIS 325 ? CE1 ? A HIS 294 CE1 57 1 Y 1 A HIS 325 ? NE2 ? A HIS 294 NE2 58 1 Y 1 A ARG 328 ? CG ? A ARG 297 CG 59 1 Y 1 A ARG 328 ? CD ? A ARG 297 CD 60 1 Y 1 A ARG 328 ? NE ? A ARG 297 NE 61 1 Y 1 A ARG 328 ? CZ ? A ARG 297 CZ 62 1 Y 1 A ARG 328 ? NH1 ? A ARG 297 NH1 63 1 Y 1 A ARG 328 ? NH2 ? A ARG 297 NH2 64 1 Y 1 A ARG 337 ? CG ? A ARG 306 CG 65 1 Y 1 A ARG 337 ? CD ? A ARG 306 CD 66 1 Y 1 A ARG 337 ? NE ? A ARG 306 NE 67 1 Y 1 A ARG 337 ? CZ ? A ARG 306 CZ 68 1 Y 1 A ARG 337 ? NH1 ? A ARG 306 NH1 69 1 Y 1 A ARG 337 ? NH2 ? A ARG 306 NH2 70 1 Y 1 A GLU 353 ? CG ? A GLU 322 CG 71 1 Y 1 A GLU 353 ? CD ? A GLU 322 CD 72 1 Y 1 A GLU 353 ? OE1 ? A GLU 322 OE1 73 1 Y 1 A GLU 353 ? OE2 ? A GLU 322 OE2 74 1 Y 1 A LYS 361 ? CG ? A LYS 330 CG 75 1 Y 1 A LYS 361 ? CD ? A LYS 330 CD 76 1 Y 1 A LYS 361 ? CE ? A LYS 330 CE 77 1 Y 1 A LYS 361 ? NZ ? A LYS 330 NZ 78 1 Y 1 A LYS 369 ? CG ? A LYS 338 CG 79 1 Y 1 A LYS 369 ? CD ? A LYS 338 CD 80 1 Y 1 A LYS 369 ? CE ? A LYS 338 CE 81 1 Y 1 A LYS 369 ? NZ ? A LYS 338 NZ 82 1 Y 1 A GLU 370 ? CG ? A GLU 339 CG 83 1 Y 1 A GLU 370 ? CD ? A GLU 339 CD 84 1 Y 1 A GLU 370 ? OE1 ? A GLU 339 OE1 85 1 Y 1 A GLU 370 ? OE2 ? A GLU 339 OE2 86 1 Y 1 A LYS 372 ? CG ? A LYS 341 CG 87 1 Y 1 A LYS 372 ? CD ? A LYS 341 CD 88 1 Y 1 A LYS 372 ? CE ? A LYS 341 CE 89 1 Y 1 A LYS 372 ? NZ ? A LYS 341 NZ 90 1 Y 1 A LYS 378 ? CD ? A LYS 347 CD 91 1 Y 1 A LYS 378 ? CE ? A LYS 347 CE 92 1 Y 1 A LYS 378 ? NZ ? A LYS 347 NZ 93 1 Y 1 A LYS 380 ? CG ? A LYS 349 CG 94 1 Y 1 A LYS 380 ? CD ? A LYS 349 CD 95 1 Y 1 A LYS 380 ? CE ? A LYS 349 CE 96 1 Y 1 A LYS 380 ? NZ ? A LYS 349 NZ 97 1 Y 1 A LYS 382 ? CG ? A LYS 351 CG 98 1 Y 1 A LYS 382 ? CD ? A LYS 351 CD 99 1 Y 1 A LYS 382 ? CE ? A LYS 351 CE 100 1 Y 1 A LYS 382 ? NZ ? A LYS 351 NZ 101 1 Y 1 A SER 383 ? OG ? A SER 352 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 210 ? A ASP 179 2 1 Y 1 A ASP 211 ? A ASP 180 3 1 Y 1 A GLY 212 ? A GLY 181 4 1 Y 1 A ASP 213 ? A ASP 182 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 'CHLORIDE ION' CL 4 'SODIUM ION' NA 5 water HOH #