HEADER VIRAL PROTEIN/PROTEIN BINDING 09-SEP-09 3JRV TITLE STRUCTURE OF POXVIRUS K7 PROTEIN IN COMPLEX WITH RNA HELICASE DDX3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN K7; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX3X; COMPND 7 CHAIN: C, D, E; COMPND 8 FRAGMENT: DDX3, UNP RESIDUES 71-90; COMPND 9 SYNONYM: DEAD BOX PROTEIN 3, X-CHROMOSOMAL, HELICASE-LIKE PROTEIN 2, COMPND 10 HLP2, DEAD BOX, X ISOFORM; COMPND 11 EC: 3.6.1.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS WR; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WESTERN RESERVE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SOLID-PHASE PEPTIDE SYNTHESIS OF CHAINS C, D AND E KEYWDS POXVIRUS PROTEIN K7, DEAD-BOX RNA HELICASE DDX3, VIRAL IMMUNE KEYWDS 2 EVASION, INNATE IMMUNITY, VIRAL PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ODA,R.A.KHAN REVDAT 4 01-NOV-17 3JRV 1 REMARK REVDAT 3 18-APR-12 3JRV 1 JRNL VERSN REVDAT 2 24-NOV-09 3JRV 1 JRNL REVDAT 1 10-NOV-09 3JRV 0 JRNL AUTH S.ODA,M.SCHRODER,A.R.KHAN JRNL TITL STRUCTURAL BASIS FOR TARGETING OF HUMAN RNA HELICASE DDX3 BY JRNL TITL 2 POXVIRUS PROTEIN K7 JRNL REF STRUCTURE V. 17 1528 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19913487 JRNL DOI 10.1016/J.STR.2009.09.005 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 42627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.821 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2596 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3505 ; 1.490 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 5.825 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;35.734 ;24.662 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;12.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1957 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 2.777 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2500 ; 4.168 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 5.732 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 8.038 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2596 ; 3.557 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 257 ;13.603 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2542 ; 8.571 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3JRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44187 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 55.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, 15.0% (W/V) PEG REMARK 280 3350, PH 5.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.44450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.76450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.44450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.76450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 82 REMARK 465 GLY A 83 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 SER C 71 REMARK 465 PHE C 72 REMARK 465 GLY C 73 REMARK 465 SER C 74 REMARK 465 ARG C 75 REMARK 465 SER C 76 REMARK 465 ASP C 77 REMARK 465 SER C 78 REMARK 465 ARG C 79 REMARK 465 GLY C 80 REMARK 465 SER C 90 REMARK 465 SER D 71 REMARK 465 PHE D 72 REMARK 465 GLY D 73 REMARK 465 SER D 74 REMARK 465 ARG D 75 REMARK 465 SER D 76 REMARK 465 ASP D 77 REMARK 465 SER D 78 REMARK 465 ARG D 79 REMARK 465 GLY D 80 REMARK 465 LYS D 81 REMARK 465 GLY D 89 REMARK 465 SER D 90 REMARK 465 SER E 71 REMARK 465 PHE E 72 REMARK 465 GLY E 73 REMARK 465 SER E 74 REMARK 465 ARG E 75 REMARK 465 SER E 76 REMARK 465 ASP E 77 REMARK 465 SER E 78 REMARK 465 ARG E 79 REMARK 465 GLY E 80 REMARK 465 LYS E 81 REMARK 465 ASP E 87 REMARK 465 ARG E 88 REMARK 465 GLY E 89 REMARK 465 SER E 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 SER A 81 OG REMARK 470 ASP A 84 CB CG OD1 OD2 REMARK 470 TYR A 86 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 86 OH REMARK 470 ILE A 87 CG1 CG2 CD1 REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 ARG B 52 CZ NH1 NH2 REMARK 470 LYS B 91 CB CG CD CE NZ REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 SER E 82 OG REMARK 470 SER E 83 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 44 O HOH B 162 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 21 35.85 -141.32 REMARK 500 SER A 118 -87.04 -151.03 REMARK 500 CYS B 21 40.01 -146.14 REMARK 500 SER B 118 -84.34 -144.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 3JRV A 1 149 UNP P68466 VK07_VACCW 1 149 DBREF 3JRV B 1 149 UNP P68466 VK07_VACCW 1 149 DBREF 3JRV C 71 90 UNP O00571 DDX3X_HUMAN 71 90 DBREF 3JRV D 71 90 UNP O00571 DDX3X_HUMAN 71 90 DBREF 3JRV E 71 90 UNP O00571 DDX3X_HUMAN 71 90 SEQRES 1 A 149 MSE ALA THR LYS LEU ASP TYR GLU ASP ALA VAL PHE TYR SEQRES 2 A 149 PHE VAL ASP ASP ASP LYS ILE CYS SER ARG ASP SER ILE SEQRES 3 A 149 ILE ASP LEU ILE ASP GLU TYR ILE THR TRP ARG ASN HIS SEQRES 4 A 149 VAL ILE VAL PHE ASN LYS ASP ILE THR SER CYS GLY ARG SEQRES 5 A 149 LEU TYR LYS GLU LEU MSE LYS PHE ASP ASP VAL ALA ILE SEQRES 6 A 149 ARG TYR TYR GLY ILE ASP LYS ILE ASN GLU ILE VAL GLU SEQRES 7 A 149 ALA MSE SER GLU GLY ASP HIS TYR ILE ASN PHE THR LYS SEQRES 8 A 149 VAL HIS ASP GLN GLU SER LEU PHE ALA THR ILE GLY ILE SEQRES 9 A 149 CYS ALA LYS ILE THR GLU HIS TRP GLY TYR LYS LYS ILE SEQRES 10 A 149 SER GLU SER ARG PHE GLN SER LEU GLY ASN ILE THR ASP SEQRES 11 A 149 LEU MSE THR ASP ASP ASN ILE ASN ILE LEU ILE LEU PHE SEQRES 12 A 149 LEU GLU LYS LYS LEU ASN SEQRES 1 B 149 MSE ALA THR LYS LEU ASP TYR GLU ASP ALA VAL PHE TYR SEQRES 2 B 149 PHE VAL ASP ASP ASP LYS ILE CYS SER ARG ASP SER ILE SEQRES 3 B 149 ILE ASP LEU ILE ASP GLU TYR ILE THR TRP ARG ASN HIS SEQRES 4 B 149 VAL ILE VAL PHE ASN LYS ASP ILE THR SER CYS GLY ARG SEQRES 5 B 149 LEU TYR LYS GLU LEU MSE LYS PHE ASP ASP VAL ALA ILE SEQRES 6 B 149 ARG TYR TYR GLY ILE ASP LYS ILE ASN GLU ILE VAL GLU SEQRES 7 B 149 ALA MSE SER GLU GLY ASP HIS TYR ILE ASN PHE THR LYS SEQRES 8 B 149 VAL HIS ASP GLN GLU SER LEU PHE ALA THR ILE GLY ILE SEQRES 9 B 149 CYS ALA LYS ILE THR GLU HIS TRP GLY TYR LYS LYS ILE SEQRES 10 B 149 SER GLU SER ARG PHE GLN SER LEU GLY ASN ILE THR ASP SEQRES 11 B 149 LEU MSE THR ASP ASP ASN ILE ASN ILE LEU ILE LEU PHE SEQRES 12 B 149 LEU GLU LYS LYS LEU ASN SEQRES 1 C 20 SER PHE GLY SER ARG SER ASP SER ARG GLY LYS SER SER SEQRES 2 C 20 PHE PHE SER ASP ARG GLY SER SEQRES 1 D 20 SER PHE GLY SER ARG SER ASP SER ARG GLY LYS SER SER SEQRES 2 D 20 PHE PHE SER ASP ARG GLY SER SEQRES 1 E 20 SER PHE GLY SER ARG SER ASP SER ARG GLY LYS SER SER SEQRES 2 E 20 PHE PHE SER ASP ARG GLY SER MODRES 3JRV MSE A 58 MET SELENOMETHIONINE MODRES 3JRV MSE A 80 MET SELENOMETHIONINE MODRES 3JRV MSE A 132 MET SELENOMETHIONINE MODRES 3JRV MSE B 58 MET SELENOMETHIONINE MODRES 3JRV MSE B 80 MET SELENOMETHIONINE MODRES 3JRV MSE B 132 MET SELENOMETHIONINE HET MSE A 58 8 HET MSE A 80 8 HET MSE A 132 8 HET MSE B 58 8 HET MSE B 80 8 HET MSE B 132 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 6 HOH *257(H2 O) HELIX 1 1 ASP A 6 ALA A 10 5 5 HELIX 2 2 SER A 22 ASP A 24 5 3 HELIX 3 3 SER A 25 PHE A 43 1 19 HELIX 4 4 GLY A 51 LYS A 59 1 9 HELIX 5 5 LYS A 59 GLY A 69 1 11 HELIX 6 6 GLY A 69 SER A 81 1 13 HELIX 7 7 ASN A 88 VAL A 92 5 5 HELIX 8 8 ASP A 94 LYS A 115 1 22 HELIX 9 9 SER A 118 PHE A 122 5 5 HELIX 10 10 ASN A 127 MSE A 132 1 6 HELIX 11 11 THR A 133 ASN A 149 1 17 HELIX 12 12 ASP B 6 ALA B 10 5 5 HELIX 13 13 SER B 22 ASP B 24 5 3 HELIX 14 14 SER B 25 PHE B 43 1 19 HELIX 15 15 GLY B 51 LYS B 59 1 9 HELIX 16 16 LYS B 59 GLY B 69 1 11 HELIX 17 17 GLY B 69 GLU B 82 1 14 HELIX 18 18 ASN B 88 VAL B 92 5 5 HELIX 19 19 ASP B 94 LYS B 115 1 22 HELIX 20 20 SER B 118 PHE B 122 5 5 HELIX 21 21 ASN B 127 MSE B 132 1 6 HELIX 22 22 THR B 133 ASN B 149 1 17 LINK C LEU A 57 N MSE A 58 1555 1555 1.34 LINK C MSE A 58 N LYS A 59 1555 1555 1.34 LINK C ALA A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N SER A 81 1555 1555 1.33 LINK C LEU A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N THR A 133 1555 1555 1.33 LINK C LEU B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N LYS B 59 1555 1555 1.32 LINK C ALA B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N SER B 81 1555 1555 1.33 LINK C LEU B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N THR B 133 1555 1555 1.34 CRYST1 90.889 69.529 65.626 90.00 122.17 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011002 0.000000 0.006920 0.00000 SCALE2 0.000000 0.014382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018001 0.00000