HEADER OXIDOREDUCTASE 09-SEP-09 3JSA TITLE HOMOSERINE DEHYDROGENASE FROM THERMOPLASMA VOLCANIUM COMPLEXED WITH TITLE 2 NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA VOLCANIUM; SOURCE 3 ORGANISM_TAXID: 50339; SOURCE 4 STRAIN: GSS1; SOURCE 5 GENE: TV0389, TVG0375766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, APC89447, HOMOSERINE, DEHYDROGENASE, NAD, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,B.NOCEK,R.HENDRICKS,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3JSA 1 REMARK REVDAT 2 13-JUL-11 3JSA 1 VERSN REVDAT 1 22-SEP-09 3JSA 0 JRNL AUTH J.OSIPIUK,B.NOCEK,R.HENDRICKS,J.ABDULLAH,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF HOMOSERINE DEHYDROGENASE FROM JRNL TITL 2 THERMOPLASMA VOLCANIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1557 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2662 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3609 ; 1.608 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;38.481 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;16.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1990 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1604 ; 0.966 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2584 ; 1.692 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1058 ; 2.694 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1018 ; 4.227 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 325 REMARK 3 RESIDUE RANGE : A 501 A 502 REMARK 3 RESIDUE RANGE : A 329 A 539 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9645 81.9321 0.2551 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.0213 REMARK 3 T33: 0.0640 T12: 0.0010 REMARK 3 T13: 0.0252 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.5950 L22: 1.0618 REMARK 3 L33: 0.9739 L12: 0.5679 REMARK 3 L13: 0.3806 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: 0.0199 S13: -0.0439 REMARK 3 S21: -0.0576 S22: 0.0035 S23: -0.0026 REMARK 3 S31: 0.0734 S32: 0.0177 S33: 0.0295 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 3JSA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 CACODYLATE, 2 M AMMONIUM SULFATE, NAD, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.30200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.15100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.15100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.30200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 190.60007 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 20.15100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 203 REMARK 465 LYS A 204 REMARK 465 ASP A 243 REMARK 465 GLN A 244 REMARK 465 PHE A 326 REMARK 465 THR A 327 REMARK 465 VAL A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 341 O HOH A 416 2.06 REMARK 500 O HOH A 364 O HOH A 473 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 -163.18 -124.96 REMARK 500 ARG A 51 81.62 -150.35 REMARK 500 SER A 65 16.36 -158.18 REMARK 500 TYR A 142 38.95 -150.20 REMARK 500 LEU A 152 -61.95 -145.64 REMARK 500 ARG A 164 -64.11 -96.17 REMARK 500 ARG A 164 -65.53 -95.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C8M RELATED DB: PDB REMARK 900 HOMOSERINE DEHYDROGENASE FROM THERMOPLASMA VOLCANIUM REMARK 900 RELATED ID: APC89447 RELATED DB: TARGETDB DBREF 3JSA A 1 328 UNP Q97BR6 Q97BR6_THEVO 1 328 SEQRES 1 A 328 MSE LYS THR ILE ASN LEU SER ILE PHE GLY LEU GLY ASN SEQRES 2 A 328 VAL GLY LEU ASN LEU LEU ARG ILE ILE ARG SER PHE ASN SEQRES 3 A 328 GLU GLU ASN ARG LEU GLY LEU LYS PHE ASN VAL VAL PHE SEQRES 4 A 328 VAL ALA ASP SER LEU HIS SER TYR TYR ASN GLU ARG ILE SEQRES 5 A 328 ASP ILE GLY LYS VAL ILE SER TYR LYS GLU LYS GLY SER SEQRES 6 A 328 LEU ASP SER LEU GLU TYR GLU SER ILE SER ALA SER GLU SEQRES 7 A 328 ALA LEU ALA ARG ASP PHE ASP ILE VAL VAL ASP ALA THR SEQRES 8 A 328 PRO ALA SER ALA ASP GLY LYS LYS GLU LEU ALA PHE TYR SEQRES 9 A 328 LYS GLU THR PHE GLU ASN GLY LYS ASP VAL VAL THR ALA SEQRES 10 A 328 ASN LYS SER GLY LEU ALA ASN PHE TRP PRO GLU ILE MSE SEQRES 11 A 328 GLU TYR ALA ARG SER ASN ASN ARG ARG ILE ARG TYR GLU SEQRES 12 A 328 ALA THR VAL ALA GLY GLY VAL PRO LEU PHE SER PHE ILE SEQRES 13 A 328 ASP TYR SER VAL LEU PRO SER ARG ILE LYS LYS PHE ARG SEQRES 14 A 328 GLY ILE VAL SER LEU THR ILE ASN TYR PHE ILE ARG GLU SEQRES 15 A 328 LEU ALA ASN LYS ARG GLU PHE ASP ASP VAL LEU SER GLU SEQRES 16 A 328 ALA THR LYS LEU GLY ILE VAL GLU LYS ASN TYR LYS ASP SEQRES 17 A 328 ASP LEU THR GLY LEU ASP ALA ALA ARG LYS SER VAL ILE SEQRES 18 A 328 LEU CYS ASN HIS LEU TYR GLY SER SER TYR ARG LEU SER SEQRES 19 A 328 ASP VAL PHE TYR GLU GLY ILE LEU ASP GLN ASP ARG SER SEQRES 20 A 328 PHE GLY LYS ASN GLU ARG LEU VAL THR GLU THR GLY ILE SEQRES 21 A 328 VAL ASN GLY LYS PRO SER ALA GLU SER ARG ILE LYS SER SEQRES 22 A 328 LEU ASP SER ASN ASP TYR LEU LEU THR LEU GLY LYS GLY SEQRES 23 A 328 SER LEU GLY TYR GLN LEU GLN THR ASP THR ASN GLY THR SEQRES 24 A 328 LEU ASN VAL SER ASP LEU TYR ASP GLY PRO TYR GLU THR SEQRES 25 A 328 ALA GLY ALA VAL MSE ASN ASP LEU VAL ILE LEU SER MSE SEQRES 26 A 328 PHE THR VAL MODRES 3JSA MSE A 1 MET SELENOMETHIONINE MODRES 3JSA MSE A 130 MET SELENOMETHIONINE MODRES 3JSA MSE A 317 MET SELENOMETHIONINE MODRES 3JSA MSE A 325 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 130 8 HET MSE A 317 8 HET MSE A 325 8 HET NAD A 501 44 HET SO4 A 502 5 HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *209(H2 O) HELIX 1 1 GLY A 12 ASN A 29 1 18 HELIX 2 2 ASP A 53 LYS A 63 1 11 HELIX 3 3 SER A 65 LEU A 69 5 5 HELIX 4 4 SER A 75 ARG A 82 1 8 HELIX 5 5 GLY A 97 ASN A 110 1 14 HELIX 6 6 LYS A 119 ASN A 136 1 18 HELIX 7 7 TYR A 142 VAL A 146 5 5 HELIX 8 8 LEU A 152 VAL A 160 1 9 HELIX 9 9 SER A 173 ASN A 185 1 13 HELIX 10 10 GLU A 188 LEU A 199 1 12 HELIX 11 11 TYR A 206 THR A 211 1 6 HELIX 12 12 GLY A 212 GLY A 228 1 17 HELIX 13 13 ARG A 232 VAL A 236 5 5 HELIX 14 14 ASP A 278 LEU A 283 5 6 HELIX 15 15 GLY A 308 MSE A 325 1 18 SHEET 1 A 7 GLU A 72 SER A 73 0 SHEET 2 A 7 SER A 46 TYR A 48 -1 N TYR A 48 O GLU A 72 SHEET 3 A 7 LEU A 33 ALA A 41 -1 N VAL A 40 O TYR A 47 SHEET 4 A 7 LYS A 2 PHE A 9 1 N LEU A 6 O VAL A 38 SHEET 5 A 7 ILE A 86 ASP A 89 1 O VAL A 88 N SER A 7 SHEET 6 A 7 ASP A 113 THR A 116 1 O ASP A 113 N VAL A 87 SHEET 7 A 7 ILE A 140 ARG A 141 1 O ARG A 141 N THR A 116 SHEET 1 B 6 PHE A 237 TYR A 238 0 SHEET 2 B 6 LYS A 264 SER A 273 1 O ALA A 267 N PHE A 237 SHEET 3 B 6 GLU A 252 VAL A 261 -1 N GLU A 257 O GLU A 268 SHEET 4 B 6 LYS A 166 ILE A 171 -1 N GLY A 170 O THR A 256 SHEET 5 B 6 GLY A 289 THR A 294 -1 O GLN A 291 N ARG A 169 SHEET 6 B 6 THR A 299 SER A 303 -1 O LEU A 300 N LEU A 292 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ILE A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N GLU A 131 1555 1555 1.33 LINK C VAL A 316 N MSE A 317 1555 1555 1.32 LINK C MSE A 317 N ASN A 318 1555 1555 1.33 LINK C SER A 324 N MSE A 325 1555 1555 1.33 SITE 1 AC1 27 GLY A 10 LEU A 11 GLY A 12 ASN A 13 SITE 2 AC1 27 VAL A 14 ALA A 41 ASP A 42 SER A 43 SITE 3 AC1 27 ALA A 90 THR A 91 PRO A 92 ALA A 93 SITE 4 AC1 27 ALA A 117 ASN A 118 ALA A 144 PRO A 309 SITE 5 AC1 27 THR A 312 HOH A 353 HOH A 408 HOH A 436 SITE 6 AC1 27 HOH A 456 HOH A 466 HOH A 468 HOH A 486 SITE 7 AC1 27 HOH A 492 HOH A 499 HOH A 505 SITE 1 AC2 3 ARG A 187 ASP A 191 HOH A 508 CRYST1 110.043 110.043 60.453 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009087 0.005247 0.000000 0.00000 SCALE2 0.000000 0.010493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016542 0.00000 HETATM 1 N MSE A 1 -19.936 81.531 20.971 1.00 35.29 N HETATM 2 CA MSE A 1 -21.314 82.104 20.916 1.00 34.63 C HETATM 3 C MSE A 1 -21.829 82.249 19.469 1.00 32.59 C HETATM 4 O MSE A 1 -22.964 81.884 19.197 1.00 31.86 O HETATM 5 CB MSE A 1 -21.457 83.388 21.776 1.00 36.17 C HETATM 6 CG MSE A 1 -22.741 84.193 21.557 1.00 40.24 C HETATM 7 SE MSE A 1 -23.764 84.792 23.174 0.60 55.97 SE HETATM 8 CE MSE A 1 -22.289 85.498 24.296 1.00 50.65 C