HEADER HYDROLASE 10-SEP-09 3JSI TITLE HUMAN PHOSPHODIESTERASE 9 IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH AFFINITY CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 9A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN: UNP RESIDUES 242-566; COMPND 6 EC: 3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE9A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHOSPHODIESTERASE, INHIBITOR, ALTERNATIVE SPLICING, CGMP, HYDROLASE, KEYWDS 2 MANGANESE, METAL-BINDING, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU REVDAT 5 06-SEP-23 3JSI 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3JSI 1 REMARK REVDAT 3 29-DEC-09 3JSI 1 JRNL REVDAT 2 22-DEC-09 3JSI 1 JRNL REVDAT 1 01-DEC-09 3JSI 0 JRNL AUTH P.R.VERHOEST,C.PROULX-LAFRANCE,M.CORMAN,L.CHENARD,C.J.HELAL, JRNL AUTH 2 X.HOU,R.KLEIMAN,S.LIU,E.MARR,F.S.MENNITI,C.J.SCHMIDT, JRNL AUTH 3 M.VANASE-FRAWLEY,A.W.SCHMIDT,R.D.WILLIAMS,F.R.NELSON, JRNL AUTH 4 K.R.FONSECA,S.LIRAS JRNL TITL IDENTIFICATION OF A BRAIN PENETRANT PDE9A INHIBITOR JRNL TITL 2 UTILIZING PROSPECTIVE DESIGN AND CHEMICAL ENABLEMENT AS A JRNL TITL 3 RAPID LEAD OPTIMIZATION STRATEGY. JRNL REF J.MED.CHEM. V. 52 7946 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19919087 JRNL DOI 10.1021/JM9015334 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 26056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.420 REMARK 3 FREE R VALUE TEST SET COUNT : 2715 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1892 REMARK 3 BIN R VALUE (WORKING SET) : 0.2297 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.74230 REMARK 3 B22 (A**2) : -7.74230 REMARK 3 B33 (A**2) : 15.48450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.453 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER 2.9.2 REMARK 200 STARTING MODEL: PDB ENTRY 3DYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.52000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.04950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.04950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.76000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.04950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.04950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 203.28000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.04950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.04950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.76000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.04950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.04950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 203.28000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 506 REMARK 465 LYS B 506 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 248 49.78 -82.23 REMARK 500 HIS A 292 -28.93 -36.90 REMARK 500 SER A 319 61.66 30.41 REMARK 500 ASN A 339 92.74 -61.65 REMARK 500 ASN A 381 77.75 -161.99 REMARK 500 SER A 404 6.11 -65.05 REMARK 500 HIS B 292 -29.20 -36.54 REMARK 500 SER B 319 61.47 30.50 REMARK 500 ASN B 339 92.57 -61.23 REMARK 500 ASN B 381 77.59 -161.72 REMARK 500 SER B 404 6.02 -64.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 256 NE2 REMARK 620 2 HIS A 292 NE2 78.1 REMARK 620 3 ASP A 293 OD2 78.6 71.7 REMARK 620 4 ASP A 402 OD1 95.9 74.0 145.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 OD1 REMARK 620 2 HOH A 951 O 118.5 REMARK 620 3 HOH A 952 O 161.5 76.9 REMARK 620 4 HOH A 953 O 83.8 111.7 100.4 REMARK 620 5 HOH A 954 O 78.7 154.9 83.6 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 256 NE2 REMARK 620 2 HIS B 292 NE2 78.0 REMARK 620 3 ASP B 293 OD2 78.5 71.8 REMARK 620 4 ASP B 402 OD1 96.0 74.3 146.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 293 OD1 REMARK 620 2 HOH B 956 O 111.8 REMARK 620 3 HOH B 957 O 174.7 63.0 REMARK 620 4 HOH B 958 O 94.0 111.4 87.2 REMARK 620 5 HOH B 959 O 94.6 143.5 90.6 90.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WTC A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WTC B 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DYN RELATED DB: PDB REMARK 900 HUMAN PHOSPHODIESTRASE 9 IN COMPLEX WITH CGMP, ZN INHIBITED DBREF 3JSI A 182 506 UNP O76083 PDE9A_HUMAN 242 566 DBREF 3JSI B 182 506 UNP O76083 PDE9A_HUMAN 242 566 SEQADV 3JSI GLY A 178 UNP O76083 EXPRESSION TAG SEQADV 3JSI SER A 179 UNP O76083 EXPRESSION TAG SEQADV 3JSI HIS A 180 UNP O76083 EXPRESSION TAG SEQADV 3JSI MET A 181 UNP O76083 EXPRESSION TAG SEQADV 3JSI GLY B 178 UNP O76083 EXPRESSION TAG SEQADV 3JSI SER B 179 UNP O76083 EXPRESSION TAG SEQADV 3JSI HIS B 180 UNP O76083 EXPRESSION TAG SEQADV 3JSI MET B 181 UNP O76083 EXPRESSION TAG SEQRES 1 A 329 GLY SER HIS MET THR TYR PRO LYS TYR LEU LEU SER PRO SEQRES 2 A 329 GLU THR ILE GLU ALA LEU ARG LYS PRO THR PHE ASP VAL SEQRES 3 A 329 TRP LEU TRP GLU PRO ASN GLU MET LEU SER CYS LEU GLU SEQRES 4 A 329 HIS MET TYR HIS ASP LEU GLY LEU VAL ARG ASP PHE SER SEQRES 5 A 329 ILE ASN PRO VAL THR LEU ARG ARG TRP LEU PHE CYS VAL SEQRES 6 A 329 HIS ASP ASN TYR ARG ASN ASN PRO PHE HIS ASN PHE ARG SEQRES 7 A 329 HIS CYS PHE CYS VAL ALA GLN MET MET TYR SER MET VAL SEQRES 8 A 329 TRP LEU CYS SER LEU GLN GLU LYS PHE SER GLN THR ASP SEQRES 9 A 329 ILE LEU ILE LEU MET THR ALA ALA ILE CYS HIS ASP LEU SEQRES 10 A 329 ASP HIS PRO GLY TYR ASN ASN THR TYR GLN ILE ASN ALA SEQRES 11 A 329 ARG THR GLU LEU ALA VAL ARG TYR ASN ASP ILE SER PRO SEQRES 12 A 329 LEU GLU ASN HIS HIS CYS ALA VAL ALA PHE GLN ILE LEU SEQRES 13 A 329 ALA GLU PRO GLU CYS ASN ILE PHE SER ASN ILE PRO PRO SEQRES 14 A 329 ASP GLY PHE LYS GLN ILE ARG GLN GLY MET ILE THR LEU SEQRES 15 A 329 ILE LEU ALA THR ASP MET ALA ARG HIS ALA GLU ILE MET SEQRES 16 A 329 ASP SER PHE LYS GLU LYS MET GLU ASN PHE ASP TYR SER SEQRES 17 A 329 ASN GLU GLU HIS MET THR LEU LEU LYS MET ILE LEU ILE SEQRES 18 A 329 LYS CYS CYS ASP ILE SER ASN GLU VAL ARG PRO MET GLU SEQRES 19 A 329 VAL ALA GLU PRO TRP VAL ASP CYS LEU LEU GLU GLU TYR SEQRES 20 A 329 PHE MET GLN SER ASP ARG GLU LYS SER GLU GLY LEU PRO SEQRES 21 A 329 VAL ALA PRO PHE MET ASP ARG ASP LYS VAL THR LYS ALA SEQRES 22 A 329 THR ALA GLN ILE GLY PHE ILE LYS PHE VAL LEU ILE PRO SEQRES 23 A 329 MET PHE GLU THR VAL THR LYS LEU PHE PRO MET VAL GLU SEQRES 24 A 329 GLU ILE MET LEU GLN PRO LEU TRP GLU SER ARG ASP ARG SEQRES 25 A 329 TYR GLU GLU LEU LYS ARG ILE ASP ASP ALA MET LYS GLU SEQRES 26 A 329 LEU GLN LYS LYS SEQRES 1 B 329 GLY SER HIS MET THR TYR PRO LYS TYR LEU LEU SER PRO SEQRES 2 B 329 GLU THR ILE GLU ALA LEU ARG LYS PRO THR PHE ASP VAL SEQRES 3 B 329 TRP LEU TRP GLU PRO ASN GLU MET LEU SER CYS LEU GLU SEQRES 4 B 329 HIS MET TYR HIS ASP LEU GLY LEU VAL ARG ASP PHE SER SEQRES 5 B 329 ILE ASN PRO VAL THR LEU ARG ARG TRP LEU PHE CYS VAL SEQRES 6 B 329 HIS ASP ASN TYR ARG ASN ASN PRO PHE HIS ASN PHE ARG SEQRES 7 B 329 HIS CYS PHE CYS VAL ALA GLN MET MET TYR SER MET VAL SEQRES 8 B 329 TRP LEU CYS SER LEU GLN GLU LYS PHE SER GLN THR ASP SEQRES 9 B 329 ILE LEU ILE LEU MET THR ALA ALA ILE CYS HIS ASP LEU SEQRES 10 B 329 ASP HIS PRO GLY TYR ASN ASN THR TYR GLN ILE ASN ALA SEQRES 11 B 329 ARG THR GLU LEU ALA VAL ARG TYR ASN ASP ILE SER PRO SEQRES 12 B 329 LEU GLU ASN HIS HIS CYS ALA VAL ALA PHE GLN ILE LEU SEQRES 13 B 329 ALA GLU PRO GLU CYS ASN ILE PHE SER ASN ILE PRO PRO SEQRES 14 B 329 ASP GLY PHE LYS GLN ILE ARG GLN GLY MET ILE THR LEU SEQRES 15 B 329 ILE LEU ALA THR ASP MET ALA ARG HIS ALA GLU ILE MET SEQRES 16 B 329 ASP SER PHE LYS GLU LYS MET GLU ASN PHE ASP TYR SER SEQRES 17 B 329 ASN GLU GLU HIS MET THR LEU LEU LYS MET ILE LEU ILE SEQRES 18 B 329 LYS CYS CYS ASP ILE SER ASN GLU VAL ARG PRO MET GLU SEQRES 19 B 329 VAL ALA GLU PRO TRP VAL ASP CYS LEU LEU GLU GLU TYR SEQRES 20 B 329 PHE MET GLN SER ASP ARG GLU LYS SER GLU GLY LEU PRO SEQRES 21 B 329 VAL ALA PRO PHE MET ASP ARG ASP LYS VAL THR LYS ALA SEQRES 22 B 329 THR ALA GLN ILE GLY PHE ILE LYS PHE VAL LEU ILE PRO SEQRES 23 B 329 MET PHE GLU THR VAL THR LYS LEU PHE PRO MET VAL GLU SEQRES 24 B 329 GLU ILE MET LEU GLN PRO LEU TRP GLU SER ARG ASP ARG SEQRES 25 B 329 TYR GLU GLU LEU LYS ARG ILE ASP ASP ALA MET LYS GLU SEQRES 26 B 329 LEU GLN LYS LYS HET ZN A 901 1 HET MG A 902 1 HET WTC A 903 22 HET ZN B 901 1 HET MG B 902 1 HET WTC B 903 22 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM WTC 6-BENZYL-1-CYCLOPENTYL-1,5-DIHYDRO-4H-PYRAZOLO[3,4- HETNAM 2 WTC D]PYRIMIDIN-4-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 WTC 2(C17 H18 N4 O) FORMUL 9 HOH *29(H2 O) HELIX 1 1 SER A 189 LEU A 196 1 8 HELIX 2 2 GLU A 207 LEU A 222 1 16 HELIX 3 3 GLY A 223 PHE A 228 1 6 HELIX 4 4 ASN A 231 ASN A 245 1 15 HELIX 5 5 ASN A 253 CYS A 271 1 19 HELIX 6 6 SER A 272 PHE A 277 1 6 HELIX 7 7 SER A 278 HIS A 292 1 15 HELIX 8 8 ASN A 300 ALA A 307 1 8 HELIX 9 9 THR A 309 ASN A 316 1 8 HELIX 10 10 SER A 319 GLU A 335 1 17 HELIX 11 11 PRO A 345 ALA A 362 1 18 HELIX 12 12 THR A 363 ALA A 366 5 4 HELIX 13 13 ARG A 367 GLU A 380 1 14 HELIX 14 14 ASN A 386 SER A 404 1 19 HELIX 15 15 ASN A 405 ARG A 408 5 4 HELIX 16 16 PRO A 409 GLY A 435 1 27 HELIX 17 17 THR A 448 VAL A 460 1 13 HELIX 18 18 VAL A 460 PHE A 472 1 13 HELIX 19 19 MET A 474 LYS A 505 1 32 HELIX 20 20 SER B 189 LEU B 196 1 8 HELIX 21 21 GLU B 207 LEU B 222 1 16 HELIX 22 22 GLY B 223 PHE B 228 1 6 HELIX 23 23 ASN B 231 ASN B 245 1 15 HELIX 24 24 ASN B 253 CYS B 271 1 19 HELIX 25 25 SER B 272 PHE B 277 1 6 HELIX 26 26 SER B 278 HIS B 292 1 15 HELIX 27 27 ASN B 300 ALA B 307 1 8 HELIX 28 28 THR B 309 ASN B 316 1 8 HELIX 29 29 SER B 319 GLU B 335 1 17 HELIX 30 30 PRO B 345 ALA B 362 1 18 HELIX 31 31 THR B 363 ALA B 366 5 4 HELIX 32 32 ARG B 367 GLU B 380 1 14 HELIX 33 33 ASN B 386 SER B 404 1 19 HELIX 34 34 ASN B 405 ARG B 408 5 4 HELIX 35 35 PRO B 409 GLY B 435 1 27 HELIX 36 36 ALA B 439 ASP B 443 5 5 HELIX 37 37 THR B 448 VAL B 460 1 13 HELIX 38 38 VAL B 460 PHE B 472 1 13 HELIX 39 39 MET B 474 LYS B 505 1 32 LINK NE2 HIS A 256 ZN ZN A 901 1555 1555 2.47 LINK NE2 HIS A 292 ZN ZN A 901 1555 1555 2.51 LINK OD2 ASP A 293 ZN ZN A 901 1555 1555 2.14 LINK OD1 ASP A 293 MG MG A 902 1555 1555 2.33 LINK OD1 ASP A 402 ZN ZN A 901 1555 1555 2.08 LINK MG MG A 902 O HOH A 951 1555 1555 2.10 LINK MG MG A 902 O HOH A 952 1555 1555 2.21 LINK MG MG A 902 O HOH A 953 1555 1555 2.05 LINK MG MG A 902 O HOH A 954 1555 1555 1.95 LINK NE2 HIS B 256 ZN ZN B 901 1555 1555 2.48 LINK NE2 HIS B 292 ZN ZN B 901 1555 1555 2.51 LINK OD2 ASP B 293 ZN ZN B 901 1555 1555 2.14 LINK OD1 ASP B 293 MG MG B 902 1555 1555 2.33 LINK OD1 ASP B 402 ZN ZN B 901 1555 1555 2.07 LINK MG MG B 902 O HOH B 956 1555 1555 2.01 LINK MG MG B 902 O HOH B 957 1555 1555 2.99 LINK MG MG B 902 O HOH B 958 1555 1555 2.38 LINK MG MG B 902 O HOH B 959 1555 1555 1.94 SITE 1 AC1 5 HIS A 256 HIS A 292 ASP A 293 ASP A 402 SITE 2 AC1 5 MG A 902 SITE 1 AC2 6 ASP A 293 ZN A 901 HOH A 951 HOH A 952 SITE 2 AC2 6 HOH A 953 HOH A 954 SITE 1 AC3 7 MET A 365 ILE A 403 LEU A 420 TYR A 424 SITE 2 AC3 7 PHE A 441 GLN A 453 PHE A 456 SITE 1 AC4 5 HIS B 256 HIS B 292 ASP B 293 ASP B 402 SITE 2 AC4 5 MG B 902 SITE 1 AC5 6 ASP B 293 ZN B 901 HOH B 956 HOH B 957 SITE 2 AC5 6 HOH B 958 HOH B 959 SITE 1 AC6 9 MET B 365 ILE B 403 LEU B 420 LEU B 421 SITE 2 AC6 9 TYR B 424 PHE B 441 GLN B 453 PHE B 456 SITE 3 AC6 9 HOH B 955 CRYST1 104.099 104.099 271.040 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003689 0.00000