data_3JT0 # _entry.id 3JT0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3JT0 RCSB RCSB055121 WWPDB D_1000055121 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3HN9 'homology is 100%' unspecified TargetDB HR5546A . unspecified # _pdbx_database_status.entry_id 3JT0 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.' 1 'Abashidze, M.' 2 'Seetharaman, J.' 3 'Sahdev, S.' 4 'Xiao, R.' 5 'Ciccosanti, C.' 6 'Belote, R.L.' 7 'Everett, J.K.' 8 'Nair, R.' 9 'Acton, T.B.' 10 'Rost, B.' 11 'Montelione, G.T.' 12 'Tong, L.' 13 'Hunt, J.F.' 14 'Northeast Structural Genomics Consortium (NESG)' 15 # _citation.id primary _citation.title 'Northeast Structural Genomics Consortium Target HR5546A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuzin, A.' 1 ? primary 'Abashidze, M.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Sahdev, S.' 4 ? primary 'Xiao, R.' 5 ? primary 'Ciccosanti, C.' 6 ? primary 'Belote, R.L.' 7 ? primary 'Everett, J.K.' 8 ? primary 'Nair, R.' 9 ? primary 'Acton, T.B.' 10 ? primary 'Rost, B.' 11 ? primary 'Montelione, G.T.' 12 ? primary 'Tong, L.' 13 ? primary 'Hunt, J.F.' 14 ? # _cell.entry_id 3JT0 _cell.length_a 39.437 _cell.length_b 72.793 _cell.length_c 81.402 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JT0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Lamin-B1 16147.178 2 ? ? 'residues 426-558' ? 2 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GHHHHHHSH(MSE)ASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQP(MSE)GGWE(MSE)IRKIGDT SVSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEEEEEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHMASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQ TVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEEEEEE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier HR5546A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 MSE n 1 12 ALA n 1 13 SER n 1 14 SER n 1 15 SER n 1 16 VAL n 1 17 SER n 1 18 ILE n 1 19 SER n 1 20 HIS n 1 21 SER n 1 22 ALA n 1 23 SER n 1 24 ALA n 1 25 THR n 1 26 GLY n 1 27 ASN n 1 28 VAL n 1 29 CYS n 1 30 ILE n 1 31 GLU n 1 32 GLU n 1 33 ILE n 1 34 ASP n 1 35 VAL n 1 36 ASP n 1 37 GLY n 1 38 LYS n 1 39 PHE n 1 40 ILE n 1 41 ARG n 1 42 LEU n 1 43 LYS n 1 44 ASN n 1 45 THR n 1 46 SER n 1 47 GLU n 1 48 GLN n 1 49 ASP n 1 50 GLN n 1 51 PRO n 1 52 MSE n 1 53 GLY n 1 54 GLY n 1 55 TRP n 1 56 GLU n 1 57 MSE n 1 58 ILE n 1 59 ARG n 1 60 LYS n 1 61 ILE n 1 62 GLY n 1 63 ASP n 1 64 THR n 1 65 SER n 1 66 VAL n 1 67 SER n 1 68 TYR n 1 69 LYS n 1 70 TYR n 1 71 THR n 1 72 SER n 1 73 ARG n 1 74 TYR n 1 75 VAL n 1 76 LEU n 1 77 LYS n 1 78 ALA n 1 79 GLY n 1 80 GLN n 1 81 THR n 1 82 VAL n 1 83 THR n 1 84 ILE n 1 85 TRP n 1 86 ALA n 1 87 ALA n 1 88 ASN n 1 89 ALA n 1 90 GLY n 1 91 VAL n 1 92 THR n 1 93 ALA n 1 94 SER n 1 95 PRO n 1 96 PRO n 1 97 THR n 1 98 ASP n 1 99 LEU n 1 100 ILE n 1 101 TRP n 1 102 LYS n 1 103 ASN n 1 104 GLN n 1 105 ASN n 1 106 SER n 1 107 TRP n 1 108 GLY n 1 109 THR n 1 110 GLY n 1 111 GLU n 1 112 ASP n 1 113 VAL n 1 114 LYS n 1 115 VAL n 1 116 ILE n 1 117 LEU n 1 118 LYS n 1 119 ASN n 1 120 SER n 1 121 GLN n 1 122 GLY n 1 123 GLU n 1 124 GLU n 1 125 VAL n 1 126 ALA n 1 127 GLN n 1 128 ARG n 1 129 SER n 1 130 THR n 1 131 VAL n 1 132 PHE n 1 133 LYS n 1 134 THR n 1 135 THR n 1 136 ILE n 1 137 PRO n 1 138 GLU n 1 139 GLU n 1 140 GLU n 1 141 GLU n 1 142 GLU n 1 143 GLU n 1 144 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LMN2, LMNB, LMNB1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'pET 14-15C' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name BL21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LMNB1_HUMAN _struct_ref.pdbx_db_accession P20700 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGV TASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEEEEEE ; _struct_ref.pdbx_align_begin 426 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JT0 A 12 ? 144 ? P20700 426 ? 558 ? 12 144 2 1 3JT0 B 12 ? 144 ? P20700 426 ? 558 ? 12 144 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JT0 MSE A 1 ? UNP P20700 ? ? 'expression tag' 1 1 1 3JT0 GLY A 2 ? UNP P20700 ? ? 'expression tag' 2 2 1 3JT0 HIS A 3 ? UNP P20700 ? ? 'expression tag' 3 3 1 3JT0 HIS A 4 ? UNP P20700 ? ? 'expression tag' 4 4 1 3JT0 HIS A 5 ? UNP P20700 ? ? 'expression tag' 5 5 1 3JT0 HIS A 6 ? UNP P20700 ? ? 'expression tag' 6 6 1 3JT0 HIS A 7 ? UNP P20700 ? ? 'expression tag' 7 7 1 3JT0 HIS A 8 ? UNP P20700 ? ? 'expression tag' 8 8 1 3JT0 SER A 9 ? UNP P20700 ? ? 'expression tag' 9 9 1 3JT0 HIS A 10 ? UNP P20700 ? ? 'expression tag' 10 10 1 3JT0 MSE A 11 ? UNP P20700 ? ? 'expression tag' 11 11 2 3JT0 MSE B 1 ? UNP P20700 ? ? 'expression tag' 1 12 2 3JT0 GLY B 2 ? UNP P20700 ? ? 'expression tag' 2 13 2 3JT0 HIS B 3 ? UNP P20700 ? ? 'expression tag' 3 14 2 3JT0 HIS B 4 ? UNP P20700 ? ? 'expression tag' 4 15 2 3JT0 HIS B 5 ? UNP P20700 ? ? 'expression tag' 5 16 2 3JT0 HIS B 6 ? UNP P20700 ? ? 'expression tag' 6 17 2 3JT0 HIS B 7 ? UNP P20700 ? ? 'expression tag' 7 18 2 3JT0 HIS B 8 ? UNP P20700 ? ? 'expression tag' 8 19 2 3JT0 SER B 9 ? UNP P20700 ? ? 'expression tag' 9 20 2 3JT0 HIS B 10 ? UNP P20700 ? ? 'expression tag' 10 21 2 3JT0 MSE B 11 ? UNP P20700 ? ? 'expression tag' 11 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JT0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 32.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein solution: 100mM NaCl, 5mM DTT, 0.02% NaN3, 10mM Tris-HCl (pH 7.5) . Reservoir solution: 100 mM NH4H2PO4, 100 mM Hepes, 18% PEG3350, VAPOR DIFFUSION, HANGING DROP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2009-08-06 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97908 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97908 # _reflns.entry_id 3JT0 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.392 _reflns.number_obs 17107 _reflns.number_all ? _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.242 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.7 _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3JT0 _refine.ls_number_reflns_obs 9337 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.322 _refine.ls_d_res_high 2.392 _refine.ls_percent_reflns_obs 95.86 _refine.ls_R_factor_obs 0.2383 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2379 _refine.ls_R_factor_R_free 0.2450 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.79 _refine.ls_number_reflns_R_free 447 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 39.972 _refine.aniso_B[1][1] 3.369 _refine.aniso_B[2][2] 0.095 _refine.aniso_B[3][3] -3.464 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.352 _refine.solvent_model_param_bsol 38.059 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct Phenix _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.25 _refine.pdbx_overall_phase_error 21.17 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1665 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1686 _refine_hist.d_res_high 2.392 _refine_hist.d_res_low 28.322 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1693 'X-RAY DIFFRACTION' ? f_angle_d 1.342 ? ? 2294 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.726 ? ? 609 'X-RAY DIFFRACTION' ? f_chiral_restr 0.100 ? ? 259 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 292 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.3916 2.7374 2970 0.2685 99.00 0.2665 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.7374 3.4479 3062 0.2670 100.00 0.2616 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.4479 28.3245 2858 0.2123 89.00 0.2279 . . 141 . . . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water.param ? # _struct.entry_id 3JT0 _struct.title ;Crystal Structure of the C-terminal fragment (426-558) Lamin-B1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR5546A ; _struct.pdbx_descriptor Lamin-B1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JT0 _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, HR5546A, LMNB1_HUMAN, Lamin-B1, Acetylation, Chromosomal rearrangement, Coiled coil, Intermediate filament, Leukodystrophy, Lipoprotein, Membrane, Nucleus, Phosphoprotein, Polymorphism, Prenylation, STRUCTURAL PROTEIN ; _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A PRO 51 C ? ? ? 1_555 A MSE 52 N ? ? A PRO 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 52 C ? ? ? 1_555 A GLY 53 N ? ? A MSE 52 A GLY 53 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale both ? A GLU 56 C ? ? ? 1_555 A MSE 57 N ? ? A GLU 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale both ? A MSE 57 C ? ? ? 1_555 A ILE 58 N ? ? A MSE 57 A ILE 58 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale both ? B PRO 51 C ? ? ? 1_555 B MSE 52 N ? ? B PRO 51 B MSE 52 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale both ? B MSE 52 C ? ? ? 1_555 B GLY 53 N ? ? B MSE 52 B GLY 53 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale both ? B GLU 56 C ? ? ? 1_555 B MSE 57 N ? ? B GLU 56 B MSE 57 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale both ? B MSE 57 C ? ? ? 1_555 B ILE 58 N ? ? B MSE 57 B ILE 58 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 95 A . ? PRO 95 A PRO 96 A ? PRO 96 A 1 0.38 2 PRO 95 B . ? PRO 95 B PRO 96 B ? PRO 96 B 1 -0.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? D ? 4 ? E ? 2 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 28 ? ILE A 33 ? VAL A 28 ILE A 33 A 2 PHE A 39 ? ASN A 44 ? PHE A 39 ASN A 44 A 3 THR A 81 ? ALA A 86 ? THR A 81 ALA A 86 A 4 ASP A 98 ? TRP A 101 ? ASP A 98 TRP A 101 B 1 GLN A 50 ? PRO A 51 ? GLN A 50 PRO A 51 B 2 VAL A 75 ? LEU A 76 ? VAL A 75 LEU A 76 C 1 THR A 64 ? LYS A 69 ? THR A 64 LYS A 69 C 2 GLU A 56 ? ILE A 61 ? GLU A 56 ILE A 61 C 3 LYS A 114 ? LYS A 118 ? LYS A 114 LYS A 118 C 4 GLU A 124 ? SER A 129 ? GLU A 124 SER A 129 D 1 VAL B 28 ? ILE B 33 ? VAL B 28 ILE B 33 D 2 PHE B 39 ? ASN B 44 ? PHE B 39 ASN B 44 D 3 THR B 81 ? TRP B 85 ? THR B 81 TRP B 85 D 4 ASP B 98 ? ILE B 100 ? ASP B 98 ILE B 100 E 1 GLN B 50 ? PRO B 51 ? GLN B 50 PRO B 51 E 2 VAL B 75 ? LEU B 76 ? VAL B 75 LEU B 76 F 1 THR B 64 ? LYS B 69 ? THR B 64 LYS B 69 F 2 GLU B 56 ? ILE B 61 ? GLU B 56 ILE B 61 F 3 VAL B 113 ? LYS B 118 ? VAL B 113 LYS B 118 F 4 GLU B 124 ? SER B 129 ? GLU B 124 SER B 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 29 ? N CYS A 29 O LYS A 43 ? O LYS A 43 A 2 3 N ILE A 40 ? N ILE A 40 O ILE A 84 ? O ILE A 84 A 3 4 N TRP A 85 ? N TRP A 85 O TRP A 101 ? O TRP A 101 B 1 2 N GLN A 50 ? N GLN A 50 O LEU A 76 ? O LEU A 76 C 1 2 O TYR A 68 ? O TYR A 68 N MSE A 57 ? N MSE A 57 C 2 3 N LYS A 60 ? N LYS A 60 O LYS A 114 ? O LYS A 114 C 3 4 N VAL A 115 ? N VAL A 115 O ARG A 128 ? O ARG A 128 D 1 2 N CYS B 29 ? N CYS B 29 O LYS B 43 ? O LYS B 43 D 2 3 N ILE B 40 ? N ILE B 40 O ILE B 84 ? O ILE B 84 D 3 4 N TRP B 85 ? N TRP B 85 O LEU B 99 ? O LEU B 99 E 1 2 N GLN B 50 ? N GLN B 50 O LEU B 76 ? O LEU B 76 F 1 2 O TYR B 68 ? O TYR B 68 N MSE B 57 ? N MSE B 57 F 2 3 N ILE B 58 ? N ILE B 58 O ILE B 116 ? O ILE B 116 F 3 4 N VAL B 115 ? N VAL B 115 O ARG B 128 ? O ARG B 128 # _atom_sites.entry_id 3JT0 _atom_sites.fract_transf_matrix[1][1] 0.025357 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013738 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012285 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 HIS 4 4 ? ? ? A . n A 1 5 HIS 5 5 ? ? ? A . n A 1 6 HIS 6 6 ? ? ? A . n A 1 7 HIS 7 7 ? ? ? A . n A 1 8 HIS 8 8 ? ? ? A . n A 1 9 SER 9 9 ? ? ? A . n A 1 10 HIS 10 10 ? ? ? A . n A 1 11 MSE 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 SER 13 13 ? ? ? A . n A 1 14 SER 14 14 ? ? ? A . n A 1 15 SER 15 15 ? ? ? A . n A 1 16 VAL 16 16 ? ? ? A . n A 1 17 SER 17 17 ? ? ? A . n A 1 18 ILE 18 18 ? ? ? A . n A 1 19 SER 19 19 ? ? ? A . n A 1 20 HIS 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 ALA 22 22 ? ? ? A . n A 1 23 SER 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 MSE 52 52 52 MSE MSE A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 MSE 57 57 57 MSE MSE A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 TRP 107 107 107 TRP TRP A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 PHE 132 132 ? ? ? A . n A 1 133 LYS 133 133 ? ? ? A . n A 1 134 THR 134 134 ? ? ? A . n A 1 135 THR 135 135 ? ? ? A . n A 1 136 ILE 136 136 ? ? ? A . n A 1 137 PRO 137 137 ? ? ? A . n A 1 138 GLU 138 138 ? ? ? A . n A 1 139 GLU 139 139 ? ? ? A . n A 1 140 GLU 140 140 ? ? ? A . n A 1 141 GLU 141 141 ? ? ? A . n A 1 142 GLU 142 142 ? ? ? A . n A 1 143 GLU 143 143 ? ? ? A . n A 1 144 GLU 144 144 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 GLY 2 2 ? ? ? B . n B 1 3 HIS 3 3 ? ? ? B . n B 1 4 HIS 4 4 ? ? ? B . n B 1 5 HIS 5 5 ? ? ? B . n B 1 6 HIS 6 6 ? ? ? B . n B 1 7 HIS 7 7 ? ? ? B . n B 1 8 HIS 8 8 ? ? ? B . n B 1 9 SER 9 9 ? ? ? B . n B 1 10 HIS 10 10 ? ? ? B . n B 1 11 MSE 11 11 ? ? ? B . n B 1 12 ALA 12 12 ? ? ? B . n B 1 13 SER 13 13 ? ? ? B . n B 1 14 SER 14 14 ? ? ? B . n B 1 15 SER 15 15 ? ? ? B . n B 1 16 VAL 16 16 ? ? ? B . n B 1 17 SER 17 17 ? ? ? B . n B 1 18 ILE 18 18 ? ? ? B . n B 1 19 SER 19 19 ? ? ? B . n B 1 20 HIS 20 20 ? ? ? B . n B 1 21 SER 21 21 ? ? ? B . n B 1 22 ALA 22 22 ? ? ? B . n B 1 23 SER 23 23 ? ? ? B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 CYS 29 29 29 CYS CYS B . n B 1 30 ILE 30 30 30 ILE ILE B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 ASP 34 34 34 ASP ASP B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 ASP 36 36 36 ASP ASP B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 ASN 44 44 44 ASN ASN B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 GLN 48 48 48 GLN GLN B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 GLN 50 50 50 GLN GLN B . n B 1 51 PRO 51 51 51 PRO PRO B . n B 1 52 MSE 52 52 52 MSE MSE B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 GLY 54 54 54 GLY GLY B . n B 1 55 TRP 55 55 55 TRP TRP B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 MSE 57 57 57 MSE MSE B . n B 1 58 ILE 58 58 58 ILE ILE B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 TYR 68 68 68 TYR TYR B . n B 1 69 LYS 69 69 69 LYS LYS B . n B 1 70 TYR 70 70 70 TYR TYR B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 SER 72 72 72 SER SER B . n B 1 73 ARG 73 73 73 ARG ARG B . n B 1 74 TYR 74 74 74 TYR TYR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 LYS 77 77 77 LYS LYS B . n B 1 78 ALA 78 78 78 ALA ALA B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 GLN 80 80 80 GLN GLN B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 THR 83 83 83 THR THR B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 TRP 85 85 85 TRP TRP B . n B 1 86 ALA 86 86 86 ALA ALA B . n B 1 87 ALA 87 87 87 ALA ALA B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 THR 92 92 92 THR THR B . n B 1 93 ALA 93 93 93 ALA ALA B . n B 1 94 SER 94 94 94 SER SER B . n B 1 95 PRO 95 95 95 PRO PRO B . n B 1 96 PRO 96 96 96 PRO PRO B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 ASP 98 98 98 ASP ASP B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 ILE 100 100 100 ILE ILE B . n B 1 101 TRP 101 101 101 TRP TRP B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 GLN 104 104 104 GLN GLN B . n B 1 105 ASN 105 105 105 ASN ASN B . n B 1 106 SER 106 106 106 SER SER B . n B 1 107 TRP 107 107 107 TRP TRP B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 GLY 110 110 110 GLY GLY B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 ASP 112 112 112 ASP ASP B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 ILE 116 116 116 ILE ILE B . n B 1 117 LEU 117 117 117 LEU LEU B . n B 1 118 LYS 118 118 118 LYS LYS B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 SER 120 120 120 SER SER B . n B 1 121 GLN 121 121 ? ? ? B . n B 1 122 GLY 122 122 122 GLY GLY B . n B 1 123 GLU 123 123 123 GLU GLU B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 VAL 125 125 125 VAL VAL B . n B 1 126 ALA 126 126 126 ALA ALA B . n B 1 127 GLN 127 127 127 GLN GLN B . n B 1 128 ARG 128 128 128 ARG ARG B . n B 1 129 SER 129 129 129 SER SER B . n B 1 130 THR 130 130 130 THR THR B . n B 1 131 VAL 131 131 131 VAL VAL B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 LYS 133 133 ? ? ? B . n B 1 134 THR 134 134 ? ? ? B . n B 1 135 THR 135 135 ? ? ? B . n B 1 136 ILE 136 136 ? ? ? B . n B 1 137 PRO 137 137 ? ? ? B . n B 1 138 GLU 138 138 ? ? ? B . n B 1 139 GLU 139 139 ? ? ? B . n B 1 140 GLU 140 140 ? ? ? B . n B 1 141 GLU 141 141 ? ? ? B . n B 1 142 GLU 142 142 ? ? ? B . n B 1 143 GLU 143 143 ? ? ? B . n B 1 144 GLU 144 144 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 145 145 HOH HOH A . C 2 HOH 2 146 146 HOH HOH A . C 2 HOH 3 147 147 HOH HOH A . C 2 HOH 4 148 148 HOH HOH A . C 2 HOH 5 149 149 HOH HOH A . C 2 HOH 6 150 150 HOH HOH A . C 2 HOH 7 151 151 HOH HOH A . C 2 HOH 8 152 152 HOH HOH A . C 2 HOH 9 153 153 HOH HOH A . C 2 HOH 10 154 154 HOH HOH A . C 2 HOH 11 155 155 HOH HOH A . C 2 HOH 12 156 156 HOH HOH A . C 2 HOH 13 157 157 HOH HOH A . D 2 HOH 1 145 145 HOH HOH B . D 2 HOH 2 146 146 HOH HOH B . D 2 HOH 3 147 147 HOH HOH B . D 2 HOH 4 148 148 HOH HOH B . D 2 HOH 5 149 149 HOH HOH B . D 2 HOH 6 150 150 HOH HOH B . D 2 HOH 7 151 151 HOH HOH B . D 2 HOH 8 152 152 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 52 A MSE 52 ? MET SELENOMETHIONINE 2 A MSE 57 A MSE 57 ? MET SELENOMETHIONINE 3 B MSE 52 B MSE 52 ? MET SELENOMETHIONINE 4 B MSE 57 B MSE 57 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.contact_author' 2 3 'Structure model' '_software.contact_author_email' 3 3 'Structure model' '_software.language' 4 3 'Structure model' '_software.location' 5 3 'Structure model' '_software.name' 6 3 'Structure model' '_software.type' 7 3 'Structure model' '_software.version' 8 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 33.4386 _pdbx_refine_tls.origin_y 44.9057 _pdbx_refine_tls.origin_z 29.3476 _pdbx_refine_tls.T[1][1] 0.1704 _pdbx_refine_tls.T[2][2] 0.1491 _pdbx_refine_tls.T[3][3] 0.1839 _pdbx_refine_tls.T[1][2] -0.0257 _pdbx_refine_tls.T[1][3] 0.0337 _pdbx_refine_tls.T[2][3] -0.0293 _pdbx_refine_tls.L[1][1] 0.6576 _pdbx_refine_tls.L[2][2] 1.0164 _pdbx_refine_tls.L[3][3] 0.2975 _pdbx_refine_tls.L[1][2] 0.5334 _pdbx_refine_tls.L[1][3] 0.0096 _pdbx_refine_tls.L[2][3] 0.0662 _pdbx_refine_tls.S[1][1] -0.0101 _pdbx_refine_tls.S[1][2] 0.0372 _pdbx_refine_tls.S[1][3] -0.0042 _pdbx_refine_tls.S[2][1] 0.1385 _pdbx_refine_tls.S[2][2] -0.0408 _pdbx_refine_tls.S[2][3] -0.0085 _pdbx_refine_tls.S[3][1] 0.0138 _pdbx_refine_tls.S[3][2] 0.0447 _pdbx_refine_tls.S[3][3] 0.0430 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal PHENIX 1.4_115 ? ? ? ? refinement ? ? ? 1 PDB_EXTRACT 3.00 'March. 27, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 PHENIX . ? ? ? ? phasing ? ? ? 6 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 109 ? ? -56.98 173.39 2 1 SER A 120 ? ? -75.06 43.32 3 1 GLN A 121 ? ? -151.50 3.40 4 1 ALA A 126 ? ? 176.90 154.29 5 1 ASN B 27 ? ? 178.40 177.92 6 1 ALA B 126 ? ? 173.26 167.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A HIS 4 ? A HIS 4 5 1 Y 1 A HIS 5 ? A HIS 5 6 1 Y 1 A HIS 6 ? A HIS 6 7 1 Y 1 A HIS 7 ? A HIS 7 8 1 Y 1 A HIS 8 ? A HIS 8 9 1 Y 1 A SER 9 ? A SER 9 10 1 Y 1 A HIS 10 ? A HIS 10 11 1 Y 1 A MSE 11 ? A MSE 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A SER 13 ? A SER 13 14 1 Y 1 A SER 14 ? A SER 14 15 1 Y 1 A SER 15 ? A SER 15 16 1 Y 1 A VAL 16 ? A VAL 16 17 1 Y 1 A SER 17 ? A SER 17 18 1 Y 1 A ILE 18 ? A ILE 18 19 1 Y 1 A SER 19 ? A SER 19 20 1 Y 1 A HIS 20 ? A HIS 20 21 1 Y 1 A SER 21 ? A SER 21 22 1 Y 1 A ALA 22 ? A ALA 22 23 1 Y 1 A SER 23 ? A SER 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A PHE 132 ? A PHE 132 26 1 Y 1 A LYS 133 ? A LYS 133 27 1 Y 1 A THR 134 ? A THR 134 28 1 Y 1 A THR 135 ? A THR 135 29 1 Y 1 A ILE 136 ? A ILE 136 30 1 Y 1 A PRO 137 ? A PRO 137 31 1 Y 1 A GLU 138 ? A GLU 138 32 1 Y 1 A GLU 139 ? A GLU 139 33 1 Y 1 A GLU 140 ? A GLU 140 34 1 Y 1 A GLU 141 ? A GLU 141 35 1 Y 1 A GLU 142 ? A GLU 142 36 1 Y 1 A GLU 143 ? A GLU 143 37 1 Y 1 A GLU 144 ? A GLU 144 38 1 Y 1 B MSE 1 ? B MSE 1 39 1 Y 1 B GLY 2 ? B GLY 2 40 1 Y 1 B HIS 3 ? B HIS 3 41 1 Y 1 B HIS 4 ? B HIS 4 42 1 Y 1 B HIS 5 ? B HIS 5 43 1 Y 1 B HIS 6 ? B HIS 6 44 1 Y 1 B HIS 7 ? B HIS 7 45 1 Y 1 B HIS 8 ? B HIS 8 46 1 Y 1 B SER 9 ? B SER 9 47 1 Y 1 B HIS 10 ? B HIS 10 48 1 Y 1 B MSE 11 ? B MSE 11 49 1 Y 1 B ALA 12 ? B ALA 12 50 1 Y 1 B SER 13 ? B SER 13 51 1 Y 1 B SER 14 ? B SER 14 52 1 Y 1 B SER 15 ? B SER 15 53 1 Y 1 B VAL 16 ? B VAL 16 54 1 Y 1 B SER 17 ? B SER 17 55 1 Y 1 B ILE 18 ? B ILE 18 56 1 Y 1 B SER 19 ? B SER 19 57 1 Y 1 B HIS 20 ? B HIS 20 58 1 Y 1 B SER 21 ? B SER 21 59 1 Y 1 B ALA 22 ? B ALA 22 60 1 Y 1 B SER 23 ? B SER 23 61 1 Y 1 B GLN 121 ? B GLN 121 62 1 Y 1 B LYS 133 ? B LYS 133 63 1 Y 1 B THR 134 ? B THR 134 64 1 Y 1 B THR 135 ? B THR 135 65 1 Y 1 B ILE 136 ? B ILE 136 66 1 Y 1 B PRO 137 ? B PRO 137 67 1 Y 1 B GLU 138 ? B GLU 138 68 1 Y 1 B GLU 139 ? B GLU 139 69 1 Y 1 B GLU 140 ? B GLU 140 70 1 Y 1 B GLU 141 ? B GLU 141 71 1 Y 1 B GLU 142 ? B GLU 142 72 1 Y 1 B GLU 143 ? B GLU 143 73 1 Y 1 B GLU 144 ? B GLU 144 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #