HEADER OXIDOREDUCTASE 13-SEP-09 3JTM TITLE STRUCTURE OF RECOMBINANT FORMATE DEHYDROGENASE FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-384; COMPND 5 SYNONYM: NAD-DEPENDENT FORMATE DEHYDROGENASE, FDH; COMPND 6 EC: 1.2.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: ECOTYPE COLUMBIA; SOURCE 6 GENE: FORMATE DEHYDROGENASE AF217195; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET23A KEYWDS FORMATE DEHYDROGENASE, MITOCHONDRION, NAD, OXIDOREDUCTASE, TRANSIT KEYWDS 2 PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,I.G.SHABALIN,A.E.SEROV,K.M.POLYAKOV,V.O.POPOV, AUTHOR 2 V.I.TISHKOV,I.P.KURANOVA,V.R.SAMIGINA REVDAT 2 20-MAR-24 3JTM 1 REMARK REVDAT 1 15-SEP-10 3JTM 0 JRNL AUTH V.I.TIMOFEEV,I.G.SHABALIN,A.E.SEROV,K.M.POLYAKOV,V.O.POPOV, JRNL AUTH 2 V.I.TISHKOV,I.P.KURANOVA,V.R.SAMIGINA JRNL TITL STRUCTURE OF RECOMBINANT FORMATE DEHYDROGENASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 4.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 3 NUMBER OF REFLECTIONS : 82275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 4097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.9956 - 3.6734 0.95 3347 178 0.1595 0.1662 REMARK 3 2 3.6734 - 3.0367 0.96 3308 174 0.1606 0.1769 REMARK 3 3 3.0367 - 2.6923 0.94 3197 173 0.1767 0.2015 REMARK 3 4 2.6923 - 2.4648 0.91 3064 175 0.1682 0.2127 REMARK 3 5 2.4648 - 2.2989 0.91 3056 180 0.1552 0.1914 REMARK 3 6 2.2989 - 2.1701 0.91 3062 168 0.1474 0.1832 REMARK 3 7 2.1701 - 2.0661 0.93 3137 147 0.1486 0.1673 REMARK 3 8 2.0661 - 1.9795 0.93 3100 166 0.1415 0.1665 REMARK 3 9 1.9795 - 1.9059 0.86 2873 153 0.1432 0.1449 REMARK 3 10 1.9059 - 1.8421 0.82 2751 150 0.1471 0.1515 REMARK 3 11 1.8421 - 1.7860 0.82 2710 151 0.1382 0.1675 REMARK 3 12 1.7860 - 1.7363 0.83 2737 155 0.1392 0.1813 REMARK 3 13 1.7363 - 1.6916 0.85 2861 122 0.1369 0.2011 REMARK 3 14 1.6916 - 1.6512 0.81 2709 128 0.1295 0.1660 REMARK 3 15 1.6512 - 1.6144 0.82 2717 142 0.1225 0.1483 REMARK 3 16 1.6144 - 1.5807 0.83 2719 151 0.1140 0.1388 REMARK 3 17 1.5807 - 1.5496 0.81 2726 139 0.1147 0.1497 REMARK 3 18 1.5496 - 1.5209 0.79 2622 132 0.1102 0.1458 REMARK 3 19 1.5209 - 1.4941 0.77 2576 130 0.1111 0.1380 REMARK 3 20 1.4941 - 1.4692 0.77 2533 134 0.1077 0.1587 REMARK 3 21 1.4692 - 1.4458 0.74 2434 149 0.1109 0.1392 REMARK 3 22 1.4458 - 1.4239 0.74 2408 132 0.1160 0.1766 REMARK 3 23 1.4239 - 1.4032 0.73 2424 111 0.1114 0.1532 REMARK 3 24 1.4032 - 1.3837 0.70 2320 106 0.1166 0.1707 REMARK 3 25 1.3837 - 1.3652 0.69 2281 115 0.1203 0.1550 REMARK 3 26 1.3652 - 1.3477 0.68 2273 91 0.1161 0.1942 REMARK 3 27 1.3477 - 1.3310 0.66 2177 117 0.1153 0.1577 REMARK 3 28 1.3310 - 1.3152 0.62 2030 106 0.1103 0.1534 REMARK 3 29 1.3152 - 1.3000 0.61 2026 122 0.1087 0.1580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.60 REMARK 3 B_SOL : 94.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.40600 REMARK 3 B22 (A**2) : 2.40600 REMARK 3 B33 (A**2) : -4.81200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2903 REMARK 3 ANGLE : 1.136 3928 REMARK 3 CHIRALITY : 0.079 423 REMARK 3 PLANARITY : 0.006 498 REMARK 3 DIHEDRAL : 15.812 1065 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.294 REMARK 200 RESOLUTION RANGE LOW (A) : 76.249 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.59000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.93250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.93250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.38500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.93250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.93250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.79500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.93250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.93250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.38500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.93250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.93250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.79500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 450 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 591 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 LYS A 112 NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 LYS A 231 CD CE NZ REMARK 470 LYS A 236 CE NZ REMARK 470 ASN A 242 OD1 ND2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 267 NZ REMARK 470 GLU A 268 OE1 OE2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 275 CE NZ REMARK 470 LYS A 317 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 -129.39 52.61 REMARK 500 HIS A 99 70.02 -159.61 REMARK 500 SER A 124 29.91 -141.17 REMARK 500 ASN A 254 49.79 -141.14 REMARK 500 ALA A 283 -87.91 -88.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 385 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 387 DBREF 3JTM A 28 378 UNP Q9S7E4 FDH_ARATH 34 384 SEQRES 1 A 351 ASP SER LYS LYS ILE VAL GLY VAL PHE TYR LYS ALA ASN SEQRES 2 A 351 GLU TYR ALA THR LYS ASN PRO ASN PHE LEU GLY CYS VAL SEQRES 3 A 351 GLU ASN ALA LEU GLY ILE ARG ASP TRP LEU GLU SER GLN SEQRES 4 A 351 GLY HIS GLN TYR ILE VAL THR ASP ASP LYS GLU GLY PRO SEQRES 5 A 351 ASP CYS GLU LEU GLU LYS HIS ILE PRO ASP LEU HIS VAL SEQRES 6 A 351 LEU ILE SER THR PRO PHE HIS PRO ALA TYR VAL THR ALA SEQRES 7 A 351 GLU ARG ILE LYS LYS ALA LYS ASN LEU LYS LEU LEU LEU SEQRES 8 A 351 THR ALA GLY ILE GLY SER ASP HIS ILE ASP LEU GLN ALA SEQRES 9 A 351 ALA ALA ALA ALA GLY LEU THR VAL ALA GLU VAL THR GLY SEQRES 10 A 351 SER ASN VAL VAL SER VAL ALA GLU ASP GLU LEU MET ARG SEQRES 11 A 351 ILE LEU ILE LEU MET ARG ASN PHE VAL PRO GLY TYR ASN SEQRES 12 A 351 GLN VAL VAL LYS GLY GLU TRP ASN VAL ALA GLY ILE ALA SEQRES 13 A 351 TYR ARG ALA TYR ASP LEU GLU GLY LYS THR ILE GLY THR SEQRES 14 A 351 VAL GLY ALA GLY ARG ILE GLY LYS LEU LEU LEU GLN ARG SEQRES 15 A 351 LEU LYS PRO PHE GLY CYS ASN LEU LEU TYR HIS ASP ARG SEQRES 16 A 351 LEU GLN MET ALA PRO GLU LEU GLU LYS GLU THR GLY ALA SEQRES 17 A 351 LYS PHE VAL GLU ASP LEU ASN GLU MET LEU PRO LYS CYS SEQRES 18 A 351 ASP VAL ILE VAL ILE ASN MET PRO LEU THR GLU LYS THR SEQRES 19 A 351 ARG GLY MET PHE ASN LYS GLU LEU ILE GLY LYS LEU LYS SEQRES 20 A 351 LYS GLY VAL LEU ILE VAL ASN ASN ALA ARG GLY ALA ILE SEQRES 21 A 351 MET GLU ARG GLN ALA VAL VAL ASP ALA VAL GLU SER GLY SEQRES 22 A 351 HIS ILE GLY GLY TYR SER GLY ASP VAL TRP ASP PRO GLN SEQRES 23 A 351 PRO ALA PRO LYS ASP HIS PRO TRP ARG TYR MET PRO ASN SEQRES 24 A 351 GLN ALA MET THR PRO HIS THR SER GLY THR THR ILE ASP SEQRES 25 A 351 ALA GLN LEU ARG TYR ALA ALA GLY THR LYS ASP MET LEU SEQRES 26 A 351 GLU ARG TYR PHE LYS GLY GLU ASP PHE PRO THR GLU ASN SEQRES 27 A 351 TYR ILE VAL LYS ASP GLY GLU LEU ALA PRO GLN TYR ARG HET SO4 A 1 5 HET SO4 A 3 5 HET GOL A 4 7 HET GOL A 5 6 HET GOL A 8 6 HET GOL A 9 6 HET GOL A 11 6 HET AZI A 379 3 HET GOL A 380 6 HET GOL A 381 6 HET GOL A 382 6 HET GOL A 383 6 HET GOL A 384 6 HET AZI A 385 3 HET GOL A 386 6 HET GOL A 387 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM AZI AZIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL 12(C3 H8 O3) FORMUL 9 AZI 2(N3 1-) FORMUL 18 HOH *393(H2 O) HELIX 1 1 ASN A 40 ASN A 46 1 7 HELIX 2 2 ASN A 55 GLY A 58 5 4 HELIX 3 3 ILE A 59 GLN A 66 1 8 HELIX 4 4 CYS A 81 ILE A 87 1 7 HELIX 5 5 THR A 104 ALA A 111 1 8 HELIX 6 6 ASP A 128 ALA A 135 1 8 HELIX 7 7 ASN A 146 ASN A 164 1 19 HELIX 8 8 ASN A 164 LYS A 174 1 11 HELIX 9 9 ASN A 178 TYR A 184 1 7 HELIX 10 10 GLY A 200 LYS A 211 1 12 HELIX 11 11 PRO A 212 GLY A 214 5 3 HELIX 12 12 ALA A 226 GLY A 234 1 9 HELIX 13 13 ASP A 240 LEU A 245 1 6 HELIX 14 14 PRO A 246 CYS A 248 5 3 HELIX 15 15 ASN A 266 LEU A 273 1 8 HELIX 16 16 ARG A 284 MET A 288 5 5 HELIX 17 17 GLU A 289 GLY A 300 1 12 HELIX 18 18 HIS A 319 TYR A 323 5 5 HELIX 19 19 THR A 333 THR A 336 5 4 HELIX 20 20 THR A 337 GLY A 358 1 22 HELIX 21 21 PRO A 362 GLU A 364 5 3 HELIX 22 22 PRO A 375 ARG A 378 5 4 SHEET 1 A 7 GLN A 69 THR A 73 0 SHEET 2 A 7 LYS A 31 VAL A 35 1 N ILE A 32 O GLN A 69 SHEET 3 A 7 VAL A 92 SER A 95 1 O ILE A 94 N VAL A 33 SHEET 4 A 7 LEU A 116 THR A 119 1 O LEU A 118 N LEU A 93 SHEET 5 A 7 THR A 138 GLU A 141 1 O THR A 138 N LEU A 117 SHEET 6 A 7 TYR A 366 LYS A 369 -1 O ILE A 367 N VAL A 139 SHEET 7 A 7 GLU A 372 LEU A 373 -1 O GLU A 372 N LYS A 369 SHEET 1 B 6 LYS A 236 PHE A 237 0 SHEET 2 B 6 ASN A 216 HIS A 220 1 N LEU A 217 O LYS A 236 SHEET 3 B 6 THR A 193 VAL A 197 1 N ILE A 194 O LEU A 218 SHEET 4 B 6 VAL A 250 ILE A 253 1 O VAL A 252 N VAL A 197 SHEET 5 B 6 LEU A 278 ASN A 281 1 O VAL A 280 N ILE A 253 SHEET 6 B 6 GLY A 304 GLY A 307 1 O SER A 306 N ILE A 279 CISPEP 1 ASP A 311 PRO A 312 0 -4.03 CISPEP 2 GLN A 313 PRO A 314 0 -0.31 SITE 1 AC1 6 ARG A 354 PRO A 362 HOH A 432 HOH A 580 SITE 2 AC1 6 HOH A 590 HOH A 671 SITE 1 AC2 3 LYS A 45 TYR A 184 ARG A 185 SITE 1 AC3 9 TYR A 102 THR A 104 LYS A 204 LEU A 223 SITE 2 AC3 9 MET A 225 ALA A 226 LEU A 229 HOH A 459 SITE 3 AC3 9 HOH A 635 SITE 1 AC4 6 HOH A 7 VAL A 53 GLU A 54 ASN A 55 SITE 2 AC4 6 ALA A 56 ARG A 60 SITE 1 AC5 11 PRO A 97 PHE A 98 GLY A 121 ILE A 122 SITE 2 AC5 11 ASN A 146 GLY A 335 TYR A 344 HOH A 400 SITE 3 AC5 11 HOH A 403 HOH A 622 HOH A 756 SITE 1 AC6 8 LEU A 57 GLY A 58 LYS A 349 GOL A 386 SITE 2 AC6 8 HOH A 437 HOH A 475 HOH A 484 HOH A 492 SITE 1 AC7 6 ASN A 146 ASN A 282 ALA A 283 HOH A 440 SITE 2 AC7 6 HOH A 622 HOH A 717 SITE 1 AC8 1 ASP A 360 SITE 1 AC9 4 ARG A 290 PRO A 312 PRO A 316 ASP A 318 SITE 1 BC1 2 TYR A 187 ASP A 249 SITE 1 BC2 9 ILE A 108 LYS A 109 ALA A 111 LYS A 112 SITE 2 BC2 9 THR A 363 GLN A 376 HOH A 505 HOH A 662 SITE 3 BC2 9 HOH A 747 SITE 1 BC3 7 GLY A 123 SER A 124 ASP A 125 GLU A 141 SITE 2 BC3 7 ILE A 367 TYR A 377 HOH A 586 SITE 1 BC4 3 GLY A 200 ARG A 201 GOL A 387 SITE 1 BC5 6 LEU A 161 ASN A 164 GLY A 303 GLY A 304 SITE 2 BC5 6 ASN A 326 HOH A 596 SITE 1 BC6 3 GOL A 9 LYS A 349 HOH A 435 SITE 1 BC7 9 THR A 104 ALA A 105 GLU A 106 ASP A 128 SITE 2 BC7 9 GLY A 200 ASP A 221 GOL A 384 HOH A 434 SITE 3 BC7 9 HOH A 742 CRYST1 107.865 107.865 71.180 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014049 0.00000