data_3JU3 # _entry.id 3JU3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3JU3 RCSB RCSB055160 WWPDB D_1000055160 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC36729.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JU3 _pdbx_database_status.recvd_initial_deposition_date 2009-09-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Marshall, N.' 2 'Bearden, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of alpha chain of probable 2-oxoacid ferredoxin oxidoreductase from Thermoplasma acidophilum' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Marshall, N.' 2 primary 'Bearden, J.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3JU3 _cell.length_a 44.429 _cell.length_b 65.528 _cell.length_c 72.185 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JU3 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable 2-oxoacid ferredoxin oxidoreductase, alpha chain' 13348.855 1 ? ? 'sequence database residues 504-618' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAEKAVLIGEKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLK(MSE)FSPFPTEFVKNVLSSANLVIDVESNYT AQAAQ(MSE)IKLYTGIDIKNKILKYNGRH(MSE)TEDEILKSAKEILNK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAEKAVLIGEKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAA QMIKLYTGIDIKNKILKYNGRHMTEDEILKSAKEILNK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC36729.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLU n 1 5 LYS n 1 6 ALA n 1 7 VAL n 1 8 LEU n 1 9 ILE n 1 10 GLY n 1 11 GLU n 1 12 LYS n 1 13 GLU n 1 14 ALA n 1 15 ASP n 1 16 ILE n 1 17 THR n 1 18 PHE n 1 19 VAL n 1 20 THR n 1 21 TRP n 1 22 GLY n 1 23 SER n 1 24 GLN n 1 25 LYS n 1 26 GLY n 1 27 PRO n 1 28 ILE n 1 29 LEU n 1 30 ASP n 1 31 VAL n 1 32 ILE n 1 33 GLU n 1 34 ASP n 1 35 LEU n 1 36 LYS n 1 37 GLU n 1 38 GLU n 1 39 GLY n 1 40 ILE n 1 41 SER n 1 42 ALA n 1 43 ASN n 1 44 LEU n 1 45 LEU n 1 46 TYR n 1 47 LEU n 1 48 LYS n 1 49 MSE n 1 50 PHE n 1 51 SER n 1 52 PRO n 1 53 PHE n 1 54 PRO n 1 55 THR n 1 56 GLU n 1 57 PHE n 1 58 VAL n 1 59 LYS n 1 60 ASN n 1 61 VAL n 1 62 LEU n 1 63 SER n 1 64 SER n 1 65 ALA n 1 66 ASN n 1 67 LEU n 1 68 VAL n 1 69 ILE n 1 70 ASP n 1 71 VAL n 1 72 GLU n 1 73 SER n 1 74 ASN n 1 75 TYR n 1 76 THR n 1 77 ALA n 1 78 GLN n 1 79 ALA n 1 80 ALA n 1 81 GLN n 1 82 MSE n 1 83 ILE n 1 84 LYS n 1 85 LEU n 1 86 TYR n 1 87 THR n 1 88 GLY n 1 89 ILE n 1 90 ASP n 1 91 ILE n 1 92 LYS n 1 93 ASN n 1 94 LYS n 1 95 ILE n 1 96 LEU n 1 97 LYS n 1 98 TYR n 1 99 ASN n 1 100 GLY n 1 101 ARG n 1 102 HIS n 1 103 MSE n 1 104 THR n 1 105 GLU n 1 106 ASP n 1 107 GLU n 1 108 ILE n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 LYS n 1 114 GLU n 1 115 ILE n 1 116 LEU n 1 117 ASN n 1 118 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Ta0773 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma acidophilum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2303 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pMCSG19 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HK35_THEAC _struct_ref.pdbx_db_accession Q9HK35 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EKAVLIGEKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMI KLYTGIDIKNKILKYNGRHMTEDEILKSAKEILNK ; _struct_ref.pdbx_align_begin 504 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3JU3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HK35 _struct_ref_seq.db_align_beg 504 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 618 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 504 _struct_ref_seq.pdbx_auth_seq_align_end 618 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JU3 SER A 1 ? UNP Q9HK35 ? ? 'EXPRESSION TAG' 501 1 1 3JU3 ASN A 2 ? UNP Q9HK35 ? ? 'EXPRESSION TAG' 502 2 1 3JU3 ALA A 3 ? UNP Q9HK35 ? ? 'EXPRESSION TAG' 503 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JU3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '2.1M DL-Malic acid pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97940 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97940 # _reflns.entry_id 3JU3 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 8590 _reflns.number_all 8637 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 41.64 _reflns.B_iso_Wilson_estimate 26.8 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.463 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.33 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 229 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3JU3 _refine.ls_number_reflns_obs 8179 _refine.ls_number_reflns_all 8586 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.51 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.36 _refine.ls_R_factor_obs 0.19958 _refine.ls_R_factor_all 0.19958 _refine.ls_R_factor_R_work 0.19765 _refine.ls_R_factor_R_free 0.23631 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 407 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 22.587 _refine.aniso_B[1][1] 0.45 _refine.aniso_B[2][2] -1.98 _refine.aniso_B[3][3] 1.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.197 _refine.pdbx_overall_ESU_R_Free 0.164 _refine.overall_SU_ML 0.130 _refine.overall_SU_B 9.606 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 903 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 996 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 48.51 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 982 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.514 1.983 ? 1336 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.411 5.000 ? 129 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.541 27.381 ? 42 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.509 15.000 ? 189 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8.283 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 155 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 737 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.033 1.500 ? 619 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.772 2.000 ? 1011 'X-RAY DIFFRACTION' ? r_scbond_it 2.146 3.000 ? 363 'X-RAY DIFFRACTION' ? r_scangle_it 3.374 4.500 ? 325 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.899 _refine_ls_shell.d_res_low 1.948 _refine_ls_shell.number_reflns_R_work 590 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs 99.04 _refine_ls_shell.R_factor_R_free 0.281 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 621 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3JU3 _struct.title 'Crystal structure of alpha chain of probable 2-oxoacid ferredoxin oxidoreductase from Thermoplasma acidophilum' _struct.pdbx_descriptor 'Probable 2-oxoacid ferredoxin oxidoreductase, alpha chain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JU3 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;Thermoplasma acidophilum, probable 2-oxoacid ferredoxin oxidoreductase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 24 ? GLU A 38 ? GLN A 524 GLU A 538 1 ? 15 HELX_P HELX_P2 2 PRO A 54 ? SER A 63 ? PRO A 554 SER A 563 1 ? 10 HELX_P HELX_P3 3 ALA A 79 ? GLY A 88 ? ALA A 579 GLY A 588 1 ? 10 HELX_P HELX_P4 4 THR A 104 ? LYS A 118 ? THR A 604 LYS A 618 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 48 C ? ? ? 1_555 A MSE 49 N ? ? A LYS 548 A MSE 549 1_555 ? ? ? ? ? ? ? 1.316 ? covale2 covale ? ? A MSE 49 C ? ? ? 1_555 A PHE 50 N ? ? A MSE 549 A PHE 550 1_555 ? ? ? ? ? ? ? 1.310 ? covale3 covale ? ? A GLN 81 C ? ? ? 1_555 A MSE 82 N ? ? A GLN 581 A MSE 582 1_555 ? ? ? ? ? ? ? 1.311 ? covale4 covale ? ? A MSE 82 C ? ? ? 1_555 A ILE 83 N ? ? A MSE 582 A ILE 583 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A HIS 102 C ? ? ? 1_555 A MSE 103 N ? ? A HIS 602 A MSE 603 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 103 C ? ? ? 1_555 A THR 104 N ? ? A MSE 603 A THR 604 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 51 A . ? SER 551 A PRO 52 A ? PRO 552 A 1 -23.26 2 SER 51 A . ? SER 551 A PRO 52 A ? PRO 552 A 1 -5.82 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 6 ? ILE A 9 ? ALA A 506 ILE A 509 A 2 ALA A 42 ? LEU A 47 ? ALA A 542 LEU A 547 A 3 ILE A 16 ? TRP A 21 ? ILE A 516 TRP A 521 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 9 ? N ILE A 509 O LEU A 44 ? O LEU A 544 A 2 3 O LEU A 45 ? O LEU A 545 N PHE A 18 ? N PHE A 518 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE EDO A 701' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 23 ? SER A 523 . ? 1_555 ? 2 AC1 5 GLN A 24 ? GLN A 524 . ? 1_555 ? 3 AC1 5 ARG A 101 ? ARG A 601 . ? 3_656 ? 4 AC1 5 HIS A 102 ? HIS A 602 . ? 3_656 ? 5 AC1 5 THR A 104 ? THR A 604 . ? 3_656 ? # _database_PDB_matrix.entry_id 3JU3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JU3 _atom_sites.fract_transf_matrix[1][1] 0.022508 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015261 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013853 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 501 ? ? ? A . n A 1 2 ASN 2 502 ? ? ? A . n A 1 3 ALA 3 503 503 ALA ALA A . n A 1 4 GLU 4 504 504 GLU GLU A . n A 1 5 LYS 5 505 505 LYS LYS A . n A 1 6 ALA 6 506 506 ALA ALA A . n A 1 7 VAL 7 507 507 VAL VAL A . n A 1 8 LEU 8 508 508 LEU LEU A . n A 1 9 ILE 9 509 509 ILE ILE A . n A 1 10 GLY 10 510 510 GLY GLY A . n A 1 11 GLU 11 511 511 GLU GLU A . n A 1 12 LYS 12 512 512 LYS LYS A . n A 1 13 GLU 13 513 513 GLU GLU A . n A 1 14 ALA 14 514 514 ALA ALA A . n A 1 15 ASP 15 515 515 ASP ASP A . n A 1 16 ILE 16 516 516 ILE ILE A . n A 1 17 THR 17 517 517 THR THR A . n A 1 18 PHE 18 518 518 PHE PHE A . n A 1 19 VAL 19 519 519 VAL VAL A . n A 1 20 THR 20 520 520 THR THR A . n A 1 21 TRP 21 521 521 TRP TRP A . n A 1 22 GLY 22 522 522 GLY GLY A . n A 1 23 SER 23 523 523 SER SER A . n A 1 24 GLN 24 524 524 GLN GLN A . n A 1 25 LYS 25 525 525 LYS LYS A . n A 1 26 GLY 26 526 526 GLY GLY A . n A 1 27 PRO 27 527 527 PRO PRO A . n A 1 28 ILE 28 528 528 ILE ILE A . n A 1 29 LEU 29 529 529 LEU LEU A . n A 1 30 ASP 30 530 530 ASP ASP A . n A 1 31 VAL 31 531 531 VAL VAL A . n A 1 32 ILE 32 532 532 ILE ILE A . n A 1 33 GLU 33 533 533 GLU GLU A . n A 1 34 ASP 34 534 534 ASP ASP A . n A 1 35 LEU 35 535 535 LEU LEU A . n A 1 36 LYS 36 536 536 LYS LYS A . n A 1 37 GLU 37 537 537 GLU GLU A . n A 1 38 GLU 38 538 538 GLU GLU A . n A 1 39 GLY 39 539 539 GLY GLY A . n A 1 40 ILE 40 540 540 ILE ILE A . n A 1 41 SER 41 541 541 SER SER A . n A 1 42 ALA 42 542 542 ALA ALA A . n A 1 43 ASN 43 543 543 ASN ASN A . n A 1 44 LEU 44 544 544 LEU LEU A . n A 1 45 LEU 45 545 545 LEU LEU A . n A 1 46 TYR 46 546 546 TYR TYR A . n A 1 47 LEU 47 547 547 LEU LEU A . n A 1 48 LYS 48 548 548 LYS LYS A . n A 1 49 MSE 49 549 549 MSE MSE A . n A 1 50 PHE 50 550 550 PHE PHE A . n A 1 51 SER 51 551 551 SER SER A . n A 1 52 PRO 52 552 552 PRO PRO A . n A 1 53 PHE 53 553 553 PHE PHE A . n A 1 54 PRO 54 554 554 PRO PRO A . n A 1 55 THR 55 555 555 THR THR A . n A 1 56 GLU 56 556 556 GLU GLU A . n A 1 57 PHE 57 557 557 PHE PHE A . n A 1 58 VAL 58 558 558 VAL VAL A . n A 1 59 LYS 59 559 559 LYS LYS A . n A 1 60 ASN 60 560 560 ASN ASN A . n A 1 61 VAL 61 561 561 VAL VAL A . n A 1 62 LEU 62 562 562 LEU LEU A . n A 1 63 SER 63 563 563 SER SER A . n A 1 64 SER 64 564 564 SER SER A . n A 1 65 ALA 65 565 565 ALA ALA A . n A 1 66 ASN 66 566 566 ASN ASN A . n A 1 67 LEU 67 567 567 LEU LEU A . n A 1 68 VAL 68 568 568 VAL VAL A . n A 1 69 ILE 69 569 569 ILE ILE A . n A 1 70 ASP 70 570 570 ASP ASP A . n A 1 71 VAL 71 571 571 VAL VAL A . n A 1 72 GLU 72 572 572 GLU GLU A . n A 1 73 SER 73 573 573 SER SER A . n A 1 74 ASN 74 574 574 ASN ASN A . n A 1 75 TYR 75 575 575 TYR TYR A . n A 1 76 THR 76 576 576 THR THR A . n A 1 77 ALA 77 577 577 ALA ALA A . n A 1 78 GLN 78 578 578 GLN GLN A . n A 1 79 ALA 79 579 579 ALA ALA A . n A 1 80 ALA 80 580 580 ALA ALA A . n A 1 81 GLN 81 581 581 GLN GLN A . n A 1 82 MSE 82 582 582 MSE MSE A . n A 1 83 ILE 83 583 583 ILE ILE A . n A 1 84 LYS 84 584 584 LYS LYS A . n A 1 85 LEU 85 585 585 LEU LEU A . n A 1 86 TYR 86 586 586 TYR TYR A . n A 1 87 THR 87 587 587 THR THR A . n A 1 88 GLY 88 588 588 GLY GLY A . n A 1 89 ILE 89 589 589 ILE ILE A . n A 1 90 ASP 90 590 590 ASP ASP A . n A 1 91 ILE 91 591 591 ILE ILE A . n A 1 92 LYS 92 592 592 LYS LYS A . n A 1 93 ASN 93 593 593 ASN ASN A . n A 1 94 LYS 94 594 594 LYS LYS A . n A 1 95 ILE 95 595 595 ILE ILE A . n A 1 96 LEU 96 596 596 LEU LEU A . n A 1 97 LYS 97 597 597 LYS ALA A . n A 1 98 TYR 98 598 598 TYR ALA A . n A 1 99 ASN 99 599 599 ASN ASN A . n A 1 100 GLY 100 600 600 GLY GLY A . n A 1 101 ARG 101 601 601 ARG ARG A . n A 1 102 HIS 102 602 602 HIS HIS A . n A 1 103 MSE 103 603 603 MSE MSE A . n A 1 104 THR 104 604 604 THR THR A . n A 1 105 GLU 105 605 605 GLU GLU A . n A 1 106 ASP 106 606 606 ASP ASP A . n A 1 107 GLU 107 607 607 GLU GLU A . n A 1 108 ILE 108 608 608 ILE ILE A . n A 1 109 LEU 109 609 609 LEU LEU A . n A 1 110 LYS 110 610 610 LYS LYS A . n A 1 111 SER 111 611 611 SER SER A . n A 1 112 ALA 112 612 612 ALA ALA A . n A 1 113 LYS 113 613 613 LYS LYS A . n A 1 114 GLU 114 614 614 GLU GLU A . n A 1 115 ILE 115 615 615 ILE ILE A . n A 1 116 LEU 116 616 616 LEU LEU A . n A 1 117 ASN 117 617 617 ASN ASN A . n A 1 118 LYS 118 618 618 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 701 701 EDO EDO A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . C 3 HOH 46 46 46 HOH HOH A . C 3 HOH 47 47 47 HOH HOH A . C 3 HOH 48 48 48 HOH HOH A . C 3 HOH 49 49 49 HOH HOH A . C 3 HOH 50 50 50 HOH HOH A . C 3 HOH 51 51 51 HOH HOH A . C 3 HOH 52 52 52 HOH HOH A . C 3 HOH 53 53 53 HOH HOH A . C 3 HOH 54 54 54 HOH HOH A . C 3 HOH 55 55 55 HOH HOH A . C 3 HOH 56 56 56 HOH HOH A . C 3 HOH 57 57 57 HOH HOH A . C 3 HOH 58 58 58 HOH HOH A . C 3 HOH 59 59 59 HOH HOH A . C 3 HOH 60 60 60 HOH HOH A . C 3 HOH 61 61 61 HOH HOH A . C 3 HOH 62 62 62 HOH HOH A . C 3 HOH 63 63 63 HOH HOH A . C 3 HOH 64 64 64 HOH HOH A . C 3 HOH 65 65 65 HOH HOH A . C 3 HOH 66 66 66 HOH HOH A . C 3 HOH 67 67 67 HOH HOH A . C 3 HOH 68 68 68 HOH HOH A . C 3 HOH 69 69 69 HOH HOH A . C 3 HOH 70 70 70 HOH HOH A . C 3 HOH 71 71 71 HOH HOH A . C 3 HOH 72 72 72 HOH HOH A . C 3 HOH 73 73 73 HOH HOH A . C 3 HOH 74 74 74 HOH HOH A . C 3 HOH 75 75 75 HOH HOH A . C 3 HOH 76 76 76 HOH HOH A . C 3 HOH 77 77 77 HOH HOH A . C 3 HOH 78 78 78 HOH HOH A . C 3 HOH 79 79 79 HOH HOH A . C 3 HOH 80 80 80 HOH HOH A . C 3 HOH 81 81 81 HOH HOH A . C 3 HOH 82 82 82 HOH HOH A . C 3 HOH 83 83 83 HOH HOH A . C 3 HOH 84 84 84 HOH HOH A . C 3 HOH 85 85 85 HOH HOH A . C 3 HOH 86 86 86 HOH HOH A . C 3 HOH 87 87 87 HOH HOH A . C 3 HOH 88 88 88 HOH HOH A . C 3 HOH 89 89 89 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 49 A MSE 549 ? MET SELENOMETHIONINE 2 A MSE 82 A MSE 582 ? MET SELENOMETHIONINE 3 A MSE 103 A MSE 603 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14920 ? 1 MORE -95 ? 1 'SSA (A^2)' 22190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 44.4290000000 0.0000000000 -1.0000000000 0.0000000000 65.5280000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 44.4290000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 72.1850000000 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 65.5280000000 0.0000000000 0.0000000000 -1.0000000000 72.1850000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 14.3766 18.4620 17.9853 0.0979 0.0621 0.0153 0.0104 -0.0032 -0.0318 3.4992 10.8666 0.9433 2.1212 -0.0957 -3.2901 0.1166 0.2819 -0.0742 -0.7115 -0.0865 0.0418 0.2783 0.0800 -0.0301 'X-RAY DIFFRACTION' 2 ? refined 17.1735 11.8102 27.5393 0.0724 0.0681 0.0583 -0.0202 -0.0615 0.0260 4.3628 17.0277 2.1243 7.5611 1.1883 1.9016 0.4260 -0.2779 -0.3136 0.6150 -0.3436 -0.5252 0.2297 0.1895 -0.0824 'X-RAY DIFFRACTION' 3 ? refined 14.7997 17.5816 20.4325 0.1048 0.0712 0.0611 0.0146 0.0017 -0.0368 3.2868 15.4643 2.6305 5.8725 -1.5981 -6.2166 0.2388 0.0986 -0.0487 0.3208 -0.1932 -0.0344 0.0082 0.2275 -0.0456 'X-RAY DIFFRACTION' 4 ? refined 32.9900 38.4720 13.1956 0.0811 0.0210 0.0538 -0.0005 0.0509 -0.0057 3.6514 6.4392 3.1165 2.2286 1.2939 1.2236 -0.1738 0.2270 -0.0398 -0.6804 0.1560 -0.3531 -0.0685 -0.0144 0.0178 'X-RAY DIFFRACTION' 5 ? refined 30.9286 40.9268 26.9172 0.1001 0.0288 0.0476 -0.0332 -0.0693 0.0267 11.3099 7.9235 1.9743 6.1203 -3.1826 -0.9661 0.4219 -0.4132 -0.1410 0.6851 -0.3738 -0.3194 -0.0621 0.0911 -0.0481 'X-RAY DIFFRACTION' 6 ? refined 8.8237 32.6997 20.5982 0.1740 0.1869 0.4421 0.0197 0.0860 -0.1008 0.1089 8.0899 15.1059 -0.9196 1.5760 -4.5568 0.0200 -0.1416 0.3892 0.4419 -0.0669 0.6699 -0.7042 0.1281 0.0468 'X-RAY DIFFRACTION' 7 ? refined 3.0041 27.9379 19.9693 0.1923 0.1989 0.5042 -0.0233 0.1426 -0.0287 29.9898 4.2953 10.3345 -16.3402 4.4614 -9.3248 -0.3460 0.0411 -0.1248 0.5973 0.5730 0.7004 -0.7794 -1.0914 -0.2271 'X-RAY DIFFRACTION' 8 ? refined 6.8812 24.5542 31.5699 0.2574 0.0642 0.1672 0.0045 0.1939 -0.0587 12.7664 14.3786 25.6528 5.2382 7.4164 3.5202 0.2160 -0.4527 0.5647 1.0244 -0.1166 1.2407 -0.8260 -0.9432 -0.0994 'X-RAY DIFFRACTION' 9 ? refined 10.2654 15.4306 34.4042 0.5718 0.4107 0.1115 0.1202 0.0027 -0.1284 14.7060 7.7623 9.0461 1.3980 8.7294 -0.6531 -0.6599 -0.1552 -0.5847 1.8749 1.0603 -0.3591 -0.4104 0.5482 -0.4004 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 504 ? ? A 522 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 523 ? ? A 538 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 539 ? ? A 548 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 549 ? ? A 565 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 566 ? ? A 576 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 578 ? ? A 587 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 588 ? ? A 591 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 592 ? ? A 598 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 602 ? ? A 616 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 phasing . ? 2 SHELXD phasing . ? 3 SHELXE 'model building' . ? 4 MLPHARE phasing . ? 5 DM 'model building' . ? 6 RESOLVE 'model building' . ? 7 Coot 'model building' . ? 8 ARP/wARP 'model building' . ? 9 REFMAC refinement 5.5.0102 ? 10 HKL-3000 'data reduction' . ? 11 HKL-3000 'data scaling' . ? 12 DM phasing . ? 13 RESOLVE phasing . ? 14 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 17 ? ? O A HOH 38 ? ? 1.87 2 1 OH A TYR 546 ? ? O A HOH 32 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 MSE _pdbx_validate_symm_contact.auth_seq_id_1 549 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 MSE _pdbx_validate_symm_contact.auth_seq_id_2 549 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_665 _pdbx_validate_symm_contact.dist 1.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 597 ? CG ? A LYS 97 CG 2 1 Y 1 A LYS 597 ? CD ? A LYS 97 CD 3 1 Y 1 A LYS 597 ? CE ? A LYS 97 CE 4 1 Y 1 A LYS 597 ? NZ ? A LYS 97 NZ 5 1 Y 1 A TYR 598 ? CG ? A TYR 98 CG 6 1 Y 1 A TYR 598 ? CD1 ? A TYR 98 CD1 7 1 Y 1 A TYR 598 ? CD2 ? A TYR 98 CD2 8 1 Y 1 A TYR 598 ? CE1 ? A TYR 98 CE1 9 1 Y 1 A TYR 598 ? CE2 ? A TYR 98 CE2 10 1 Y 1 A TYR 598 ? CZ ? A TYR 98 CZ 11 1 Y 1 A TYR 598 ? OH ? A TYR 98 OH # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 501 ? A SER 1 2 1 Y 1 A ASN 502 ? A ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #