HEADER HYDROLASE 14-SEP-09 3JU4 TITLE CRYSTAL STRUCTURE ANALYSIS OF ENDOSIALIDASENF AT 0.98 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-N-ACETYLNEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 246-910; COMPND 5 SYNONYM: ENDONF, ENDO-N, ENDOSIALIDASE, G102; COMPND 6 EC: 3.2.1.129; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE K1F; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE K1F; SOURCE 4 ORGANISM_TAXID: 344021; SOURCE 5 STRAIN: K1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS ENDONF, POLYSIA, HIGH-RESOLUTION, 1A, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.C.SCHULZ,P.NEUMAN,R.GERARDY-SCHAHN,G.M.SHELDRICK,R.FICNER REVDAT 4 01-NOV-23 3JU4 1 HETSYN REVDAT 3 29-JUL-20 3JU4 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 18-APR-12 3JU4 1 JRNL VERSN REVDAT 1 02-FEB-10 3JU4 0 JRNL AUTH E.C.SCHULZ,P.NEUMANN,R.GERARDY-SCHAHN,G.M.SHELDRICK,R.FICNER JRNL TITL STRUCTURE ANALYSIS OF ENDOSIALIDASE NF AT 0.98 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 176 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20124697 JRNL DOI 10.1107/S0907444909048720 REMARK 2 REMARK 2 RESOLUTION. 0.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.116 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.133 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 25843 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 1616 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 43 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 516832 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.980 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 12.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41500 REMARK 200 FOR SHELL : 3.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1V0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% (W/V) PEG 8000, 0.1M TRIS/HCL PH REMARK 280 7.2, 3% ISOPROPANOL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.52000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.36389 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.56333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 59.52000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.36389 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.56333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 59.52000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.36389 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.56333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.72778 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 117.12667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 68.72778 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 117.12667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 68.72778 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 117.12667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 44390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -271.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 119.04000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 59.52000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 103.09166 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1087 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1088 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2256 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 434 OG1 THR A 443 1.97 REMARK 500 OD1 ASP A 779 O HOH A 2257 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 315 CD GLU A 315 OE1 0.066 REMARK 500 ARG A 421 CZ ARG A 421 NH1 -0.079 REMARK 500 ARG A 765 CD ARG A 765 NE -0.106 REMARK 500 ARG A 765 CD ARG A 765 NE -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 243 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 243 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 LYS A 247 CD - CE - NZ ANGL. DEV. = 21.9 DEGREES REMARK 500 THR A 265 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 LYS A 279 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 TYR A 296 CB - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR A 296 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU A 309 CG - CD - OE1 ANGL. DEV. = 15.6 DEGREES REMARK 500 ASP A 377 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 398 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 406 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 425 CD - NE - CZ ANGL. DEV. = 46.1 DEGREES REMARK 500 ARG A 425 NH1 - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 425 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 425 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 440 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 549 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 549 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 568 CD - NE - CZ ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 568 NH1 - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 568 NE - CZ - NH1 ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG A 568 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 GLU A 574 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 611 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 611 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 611 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 661 CG - CD2 - CE2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR A 661 CZ - CE2 - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 LYS A 662 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 667 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 682 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 690 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASN A 712 OD1 - CG - ND2 ANGL. DEV. = 22.7 DEGREES REMARK 500 ASN A 712 CB - CG - OD1 ANGL. DEV. = -17.4 DEGREES REMARK 500 MET A 717 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 HIS A 723 CE1 - NE2 - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 765 CD - NE - CZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 765 NE - CZ - NH1 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 765 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 765 NE - CZ - NH2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 779 CB - CG - OD1 ANGL. DEV. = -18.8 DEGREES REMARK 500 ASP A 779 CB - CG - OD2 ANGL. DEV. = 22.3 DEGREES REMARK 500 ARG A 812 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 251 -53.61 -133.88 REMARK 500 GLU A 310 -0.46 67.92 REMARK 500 ASP A 321 71.79 -155.23 REMARK 500 ASN A 338 -1.27 79.54 REMARK 500 HIS A 350 83.65 -67.56 REMARK 500 ARG A 354 19.27 58.88 REMARK 500 ASP A 364 38.88 -140.76 REMARK 500 SER A 528 156.87 78.97 REMARK 500 ASP A 533 -162.22 -162.61 REMARK 500 HIS A 624 33.11 70.31 REMARK 500 HIS A 628 -2.12 71.39 REMARK 500 VAL A 704 66.33 33.84 REMARK 500 ASP A 711 -131.69 57.62 REMARK 500 ASP A 711 -133.94 57.62 REMARK 500 SER A 740 -133.53 56.23 REMARK 500 SER A 740 -128.52 48.28 REMARK 500 SER A 806 -16.84 -146.99 REMARK 500 SER A 808 75.38 57.00 REMARK 500 SER A 878 -8.84 78.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 330 ASP A 331 -32.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 243 0.14 SIDE CHAIN REMARK 500 ARG A 568 0.10 SIDE CHAIN REMARK 500 ARG A 569 0.12 SIDE CHAIN REMARK 500 ARG A 765 0.14 SIDE CHAIN REMARK 500 ARG A 865 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 7 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 322 O REMARK 620 2 TYR A 324 O 83.7 REMARK 620 3 HIS A 743 O 118.1 93.8 REMARK 620 4 SER A 745 O 137.0 85.9 104.1 REMARK 620 5 ASP A 746 OD2 88.5 150.5 114.8 80.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V0E RELATED DB: PDB REMARK 900 RELATED ID: 1V0F RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITORS STATE THAT RESIDUE 628 IS HIS AND THAT UNIPROT IS REMARK 999 INCORRECT AT THIS POSITION. DBREF 3JU4 A 246 910 UNP Q04830 ENAN_BPK1F 246 910 SEQADV 3JU4 VAL A 241 UNP Q04830 EXPRESSION TAG SEQADV 3JU4 PRO A 242 UNP Q04830 EXPRESSION TAG SEQADV 3JU4 ARG A 243 UNP Q04830 EXPRESSION TAG SEQADV 3JU4 GLY A 244 UNP Q04830 EXPRESSION TAG SEQADV 3JU4 SER A 245 UNP Q04830 EXPRESSION TAG SEQADV 3JU4 HIS A 628 UNP Q04830 ARG 628 SEE REMARK 999 SEQRES 1 A 670 VAL PRO ARG GLY SER ALA LYS GLY ASP GLY VAL THR ASP SEQRES 2 A 670 ASP THR ALA ALA LEU THR SER ALA LEU ASN ASP THR PRO SEQRES 3 A 670 VAL GLY GLN LYS ILE ASN GLY ASN GLY LYS THR TYR LYS SEQRES 4 A 670 VAL THR SER LEU PRO ASP ILE SER ARG PHE ILE ASN THR SEQRES 5 A 670 ARG PHE VAL TYR GLU ARG ILE PRO GLY GLN PRO LEU TYR SEQRES 6 A 670 TYR ALA SER GLU GLU PHE VAL GLN GLY GLU LEU PHE LYS SEQRES 7 A 670 ILE THR ASP THR PRO TYR TYR ASN ALA TRP PRO GLN ASP SEQRES 8 A 670 LYS ALA PHE VAL TYR GLU ASN VAL ILE TYR ALA PRO TYR SEQRES 9 A 670 MET GLY SER ASP ARG HIS GLY VAL SER ARG LEU HIS VAL SEQRES 10 A 670 SER TRP VAL LYS SER GLY ASP ASP GLY GLN THR TRP SER SEQRES 11 A 670 THR PRO GLU TRP LEU THR ASP LEU HIS PRO ASP TYR PRO SEQRES 12 A 670 THR VAL ASN TYR HIS CYS MET SER MET GLY VAL CYS ARG SEQRES 13 A 670 ASN ARG LEU PHE ALA MET ILE GLU THR ARG THR LEU ALA SEQRES 14 A 670 LYS ASN ALA LEU THR ASN CYS ALA LEU TRP ASP ARG PRO SEQRES 15 A 670 MET SER ARG SER LEU HIS LEU THR GLY GLY ILE THR LYS SEQRES 16 A 670 ALA ALA ASN GLN ARG TYR ALA THR ILE HIS VAL PRO ASP SEQRES 17 A 670 HIS GLY LEU PHE VAL GLY ASP PHE VAL ASN PHE SER ASN SEQRES 18 A 670 SER ALA VAL THR GLY VAL SER GLY ASP MET THR VAL ALA SEQRES 19 A 670 THR VAL ILE ASP LYS ASP ASN PHE THR VAL LEU THR PRO SEQRES 20 A 670 ASN GLN GLN THR SER ASP LEU ASN ASN ALA GLY LYS ASN SEQRES 21 A 670 TRP HIS MET GLY THR SER PHE HIS LYS SER PRO TRP ARG SEQRES 22 A 670 LYS THR ASP LEU GLY LEU ILE PRO SER VAL THR GLU VAL SEQRES 23 A 670 HIS SER PHE ALA THR ILE ASP ASN ASN GLY PHE ALA MET SEQRES 24 A 670 GLY TYR HIS GLN GLY ASP VAL ALA PRO ARG GLU VAL GLY SEQRES 25 A 670 LEU PHE TYR PHE PRO ASP ALA PHE ASN SER PRO SER ASN SEQRES 26 A 670 TYR VAL ARG ARG GLN ILE PRO SER GLU TYR GLU PRO ASP SEQRES 27 A 670 ALA SER GLU PRO CYS ILE LYS TYR TYR ASP GLY VAL LEU SEQRES 28 A 670 TYR LEU ILE THR ARG GLY THR ARG GLY ASP ARG LEU GLY SEQRES 29 A 670 SER SER LEU HIS ARG SER ARG ASP ILE GLY GLN THR TRP SEQRES 30 A 670 GLU SER LEU ARG PHE PRO HIS ASN VAL HIS HIS THR THR SEQRES 31 A 670 LEU PRO PHE ALA LYS VAL GLY ASP ASP LEU ILE MET PHE SEQRES 32 A 670 GLY SER GLU ARG ALA GLU ASN GLU TRP GLU ALA GLY ALA SEQRES 33 A 670 PRO ASP ASP ARG TYR LYS ALA SER TYR PRO ARG THR PHE SEQRES 34 A 670 TYR ALA ARG LEU ASN VAL ASN ASN TRP ASN ALA ASP ASP SEQRES 35 A 670 ILE GLU TRP VAL ASN ILE THR ASP GLN ILE TYR GLN GLY SEQRES 36 A 670 GLY ILE VAL ASN SER GLY VAL GLY VAL GLY SER VAL VAL SEQRES 37 A 670 VAL LYS ASP ASN TYR ILE TYR TYR MET PHE GLY GLY GLU SEQRES 38 A 670 ASP HIS PHE ASN PRO TRP THR TYR GLY ASP ASN SER ALA SEQRES 39 A 670 LYS ASP PRO PHE LYS SER ASP GLY HIS PRO SER ASP LEU SEQRES 40 A 670 TYR CYS TYR LYS MET LYS ILE GLY PRO ASP ASN ARG VAL SEQRES 41 A 670 SER ARG ASP PHE ARG TYR GLY ALA VAL PRO ASN ARG ALA SEQRES 42 A 670 VAL PRO VAL PHE PHE ASP THR ASN GLY VAL ARG THR VAL SEQRES 43 A 670 PRO ALA PRO MET GLU PHE THR GLY ASP LEU GLY LEU GLY SEQRES 44 A 670 HIS VAL THR ILE ARG ALA SER THR SER SER ASN ILE ARG SEQRES 45 A 670 SER GLU VAL LEU MET GLU GLY GLU TYR GLY PHE ILE GLY SEQRES 46 A 670 LYS SER ILE PRO THR ASP ASN PRO ALA GLY GLN ARG ILE SEQRES 47 A 670 ILE PHE CYS GLY GLY GLU GLY THR SER SER THR THR GLY SEQRES 48 A 670 ALA GLN ILE THR LEU TYR GLY ALA ASN ASN THR ASP SER SEQRES 49 A 670 ARG ARG ILE VAL TYR ASN GLY ASP GLU HIS LEU PHE GLN SEQRES 50 A 670 SER ALA ASP VAL LYS PRO TYR ASN ASP ASN VAL THR ALA SEQRES 51 A 670 LEU GLY GLY PRO SER ASN ARG PHE THR THR ALA TYR LEU SEQRES 52 A 670 GLY SER ASN PRO ILE VAL THR HET SLB A 1 21 HET CL A 2 1 HET CL A 3 1 HET CL A 4 1 HET CL A 5 1 HET CL A 6 1 HET NA A 7 1 HETNAM SLB N-ACETYL-BETA-NEURAMINIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN SLB N-ACETYLNEURAMINIC ACID; SIALIC ACID; O-SIALIC ACID; 5- HETSYN 2 SLB N-ACETYL-BETA-D-NEURAMINIC ACID; BETA-SIALIC ACID FORMUL 2 SLB C11 H19 N O9 FORMUL 3 CL 5(CL 1-) FORMUL 8 NA NA 1+ FORMUL 9 HOH *1616(H2 O) HELIX 1 1 ASP A 254 THR A 265 1 12 HELIX 2 2 ASP A 285 SER A 287 5 3 HELIX 3 3 PRO A 572 GLU A 576 5 5 HELIX 4 4 ASN A 832 GLY A 835 5 4 HELIX 5 5 SER A 847 GLY A 851 5 5 SHEET 1 A 8 ASP A 249 ASP A 253 0 SHEET 2 A 8 THR A 277 LYS A 279 1 O THR A 277 N GLY A 250 SHEET 3 A 8 ARG A 293 TYR A 296 1 O ARG A 293 N TYR A 278 SHEET 4 A 8 LEU A 304 ALA A 307 -1 O TYR A 306 N PHE A 294 SHEET 5 A 8 VAL A 686 ASP A 690 1 O ASN A 687 N TYR A 305 SHEET 6 A 8 ARG A 667 ASN A 674 -1 N TYR A 670 O VAL A 686 SHEET 7 A 8 ASP A 639 SER A 645 -1 N LEU A 640 O LEU A 673 SHEET 8 A 8 PHE A 633 VAL A 636 -1 N ALA A 634 O ILE A 641 SHEET 1 B 2 ILE A 271 ASN A 272 0 SHEET 2 B 2 PHE A 289 ILE A 290 1 O ILE A 290 N ILE A 271 SHEET 1 C 4 GLY A 314 LYS A 318 0 SHEET 2 C 4 ASP A 746 LYS A 753 -1 O LYS A 751 N GLU A 315 SHEET 3 C 4 TYR A 713 GLY A 720 -1 N PHE A 718 O TYR A 748 SHEET 4 C 4 GLY A 703 LYS A 710 -1 N SER A 706 O MET A 717 SHEET 1 D 3 TYR A 325 ALA A 327 0 SHEET 2 D 3 VAL A 339 SER A 347 -1 O SER A 347 N TYR A 325 SHEET 3 D 3 PHE A 334 TYR A 336 -1 N PHE A 334 O TYR A 341 SHEET 1 E 4 TYR A 325 ALA A 327 0 SHEET 2 E 4 VAL A 339 SER A 347 -1 O SER A 347 N TYR A 325 SHEET 3 E 4 HIS A 356 SER A 362 -1 O VAL A 360 N ALA A 342 SHEET 4 E 4 GLU A 373 TRP A 374 -1 O GLU A 373 N TRP A 359 SHEET 1 F 3 VAL A 385 HIS A 388 0 SHEET 2 F 3 ARG A 398 THR A 407 -1 O GLU A 404 N HIS A 388 SHEET 3 F 3 MET A 392 CYS A 395 -1 N GLY A 393 O PHE A 400 SHEET 1 G 4 VAL A 385 HIS A 388 0 SHEET 2 G 4 ARG A 398 THR A 407 -1 O GLU A 404 N HIS A 388 SHEET 3 G 4 LEU A 413 PRO A 422 -1 O THR A 414 N THR A 405 SHEET 4 G 4 ARG A 513 ASP A 516 -1 O ARG A 513 N ASP A 420 SHEET 1 H 4 SER A 426 THR A 430 0 SHEET 2 H 4 ASN A 500 THR A 505 -1 O MET A 503 N LEU A 427 SHEET 3 H 4 PHE A 456 SER A 460 -1 N ASN A 458 O GLY A 504 SHEET 4 H 4 GLY A 469 THR A 472 -1 O MET A 471 N VAL A 457 SHEET 1 I 5 THR A 475 ASP A 478 0 SHEET 2 I 5 ASN A 481 LEU A 485 -1 O THR A 483 N THR A 475 SHEET 3 I 5 TYR A 441 HIS A 445 -1 N ILE A 444 O PHE A 482 SHEET 4 I 5 ILE A 433 LYS A 435 -1 N THR A 434 O THR A 443 SHEET 5 I 5 LEU A 494 ASN A 495 -1 O LEU A 494 N LYS A 435 SHEET 1 J 4 GLU A 525 THR A 531 0 SHEET 2 J 4 PHE A 537 GLN A 543 -1 O ALA A 538 N ALA A 530 SHEET 3 J 4 GLU A 550 PHE A 556 -1 O PHE A 556 N PHE A 537 SHEET 4 J 4 VAL A 567 GLN A 570 -1 O ARG A 569 N LEU A 553 SHEET 1 K 4 ALA A 579 TYR A 587 0 SHEET 2 K 4 VAL A 590 GLY A 597 -1 O TYR A 592 N LYS A 585 SHEET 3 K 4 SER A 606 SER A 610 -1 O SER A 610 N LEU A 591 SHEET 4 K 4 GLU A 618 ARG A 621 -1 O LEU A 620 N LEU A 607 SHEET 1 L 2 PHE A 777 PHE A 778 0 SHEET 2 L 2 ARG A 784 THR A 785 -1 O THR A 785 N PHE A 777 SHEET 1 M 3 ARG A 837 CYS A 841 0 SHEET 2 M 3 GLN A 853 TYR A 857 -1 O ILE A 854 N PHE A 840 SHEET 3 M 3 ILE A 867 ASN A 870 -1 O ASN A 870 N GLN A 853 LINK NA NA A 7 O THR A 322 1555 1555 2.44 LINK NA NA A 7 O TYR A 324 1555 1555 2.53 LINK NA NA A 7 O HIS A 743 1555 1555 2.46 LINK NA NA A 7 O SER A 745 1555 1555 2.54 LINK NA NA A 7 OD2 ASP A 746 1555 1555 2.79 CISPEP 1 TYR A 382 PRO A 383 0 6.53 CISPEP 2 ALA A 547 PRO A 548 0 -3.55 CRYST1 119.040 119.040 175.690 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008401 0.004850 0.000000 0.00000 SCALE2 0.000000 0.009700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005692 0.00000