HEADER VIRAL PROTEIN 17-SEP-09 3JW6 TITLE CRYSTAL STRUCTURE OF ACMNPV BACULOVIRUS POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAJOR OCCLUSION PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS SOURCE 3 VIRUS; SOURCE 4 ORGANISM_COMMON: ACMNPV; SOURCE 5 ORGANISM_TAXID: 46015; SOURCE 6 CELL: SF21; SOURCE 7 GENE: PH, P29, POLH; SOURCE 8 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 12 OTHER_DETAILS: CRYSTALS WERE PURIFIED FROM SF21 CELLS INFECTED BY SOURCE 13 THE AUTOGRAPHA CALIFORNICA MULTICAPSID NUCLEOPOLYHEDROVIRUS (ACMNPV) KEYWDS JELLY-ROLL, DISULFIDE BOND, DOMAIN SWAPPING, VIRAL OCCLUSION BODY, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.COULIBALY,E.CHIU,P.METCALF REVDAT 6 13-NOV-24 3JW6 1 REMARK LINK REVDAT 5 25-JUL-18 3JW6 1 COMPND SOURCE REMARK SEQADV REVDAT 4 01-NOV-17 3JW6 1 REMARK REVDAT 3 12-JAN-10 3JW6 1 JRNL REVDAT 2 29-DEC-09 3JW6 1 JRNL REVDAT 1 08-DEC-09 3JW6 0 JRNL AUTH F.COULIBALY,E.CHIU,S.GUTMANN,C.RAJENDRAN,P.W.HAEBEL,K.IKEDA, JRNL AUTH 2 H.MORI,V.K.WARD,C.SCHULZE-BRIESE,P.METCALF JRNL TITL THE ATOMIC STRUCTURE OF BACULOVIRUS POLYHEDRA REVEALS THE JRNL TITL 2 INDEPENDENT EMERGENCE OF INFECTIOUS CRYSTALS IN DNA AND RNA JRNL TITL 3 VIRUSES JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 22205 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 20007786 JRNL DOI 10.1073/PNAS.0910686106 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.840 REMARK 3 FREE R VALUE TEST SET COUNT : 811 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2299 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1710 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2069 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.199 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUE ACYS132 FORMS A DISULFIDE BOND REMARK 3 WITH RESIDUE BCYS132 OF SYMMETRY MOLECULE 4566. BY SYMMETRY, REMARK 3 THIS ALSO IMPLIES THAT RESIDUE BCYS132 FORMS A DISULFIDE BOND REMARK 3 WITH RESIDUE ACYS132 OF SYMMETRY MOLECULE 4566. REMARK 4 REMARK 4 3JW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SAGITALLY HORIZONTAL FOCUSSING REMARK 200 SI(111) MERIDIONALLY VERTICAL REMARK 200 FOCUSSING RH-COATED MIRROR REMARK 200 OPTICS : MD2 MICRODIFFRACTOMETER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 22.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATURAL INTRACELLULAR CRYSTALS WERE REMARK 280 DIRECTLY PURIFIED FROM SF21 CELLS INFECTED BY THE ACMNPV REMARK 280 BACULOVIRUS, PH 7, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.59150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.59150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.59150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.59150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.59150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.59150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.59150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.59150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.59150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.59150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.59150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.59150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.59150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.59150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.59150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.59150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.59150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.59150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.59150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.59150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.59150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.59150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.59150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.59150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.59150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.59150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: POLYHEDRA ARE VIRUS-CONTAINING CRYSTALS, WHICH REPRESENT REMARK 300 THE MAIN INFECTIOUS FORM OF BACULOVIRUS. THE BIOLOGICAL ASSEMBLY IS REMARK 300 THE WHOLE CRYSTAL. DODECAMERS OF THE POLYHEDRIN PROTEIN ARE REMARK 300 PUTATIVE BUILDING BLOCKS OF THE CRYSTAL, WHICH ARE GENERATED BY THE REMARK 300 SYMMETRY OPERATIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 56170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 107520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -266.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 103.18300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 103.18300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 103.18300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 103.18300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 103.18300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.18300 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 103.18300 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 103.18300 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 103.18300 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 103.18300 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 103.18300 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 103.18300 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 103.18300 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 103.18300 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 103.18300 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 103.18300 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 103.18300 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 103.18300 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 308 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 TYR A 4 REMARK 465 SER A 5 REMARK 465 TYR A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 ILE A 10 REMARK 465 LYS A 29 REMARK 465 ASN A 30 REMARK 465 ALA A 31 REMARK 465 LYS A 32 REMARK 465 ARG A 33 REMARK 465 LYS A 34 REMARK 465 LYS A 35 REMARK 465 HIS A 36 REMARK 465 PHE A 37 REMARK 465 ALA A 38 REMARK 465 GLU A 39 REMARK 465 HIS A 40 REMARK 465 GLU A 41 REMARK 465 ILE A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ALA A 45 REMARK 465 THR A 46 REMARK 465 LEU A 47 REMARK 465 ASP A 48 REMARK 465 ARG A 142 REMARK 465 CYS A 143 REMARK 465 ASP A 144 REMARK 465 PRO A 145 REMARK 465 ASP A 146 REMARK 465 LYS A 173 REMARK 465 LYS A 174 REMARK 465 GLY A 175 REMARK 465 GLY A 176 REMARK 465 GLY A 177 REMARK 465 CYS A 178 REMARK 465 PRO A 179 REMARK 465 ILE A 180 REMARK 465 MSE A 181 REMARK 465 ASN A 182 REMARK 465 LEU A 183 REMARK 465 HIS A 184 REMARK 465 SER A 185 REMARK 465 GLU A 186 REMARK 465 TYR A 187 REMARK 465 ILE A 199 REMARK 465 TRP A 200 REMARK 465 GLU A 201 REMARK 465 ASN A 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 TYR A 147 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 198 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 63 151.12 -48.76 REMARK 500 PHE A 233 75.82 -112.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JVB RELATED DB: PDB REMARK 900 POLYHEDRIN PROTEIN OF WISEANA SPP. NUCLEOPOLYHEDROSIS VIRUS DBREF 3JW6 A 1 245 UNP P04871 PYHD_NPVAC 1 245 SEQADV 3JW6 ASP A 25 UNP P04871 GLY 25 ENGINEERED MUTATION SEQRES 1 A 245 MSE PRO ASP TYR SER TYR ARG PRO THR ILE GLY ARG THR SEQRES 2 A 245 TYR VAL TYR ASP ASN LYS TYR TYR LYS ASN LEU ASP ALA SEQRES 3 A 245 VAL ILE LYS ASN ALA LYS ARG LYS LYS HIS PHE ALA GLU SEQRES 4 A 245 HIS GLU ILE GLU GLU ALA THR LEU ASP PRO LEU ASP ASN SEQRES 5 A 245 TYR LEU VAL ALA GLU ASP PRO PHE LEU GLY PRO GLY LYS SEQRES 6 A 245 ASN GLN LYS LEU THR LEU PHE LYS GLU ILE ARG ASN VAL SEQRES 7 A 245 LYS PRO ASP THR MSE LYS LEU VAL VAL GLY TRP LYS GLY SEQRES 8 A 245 LYS GLU PHE TYR ARG GLU THR TRP THR ARG PHE MSE GLU SEQRES 9 A 245 ASP SER PHE PRO ILE VAL ASN ASP GLN GLU VAL MSE ASP SEQRES 10 A 245 VAL PHE LEU VAL VAL ASN MSE ARG PRO THR ARG PRO ASN SEQRES 11 A 245 ARG CYS TYR LYS PHE LEU ALA GLN HIS ALA LEU ARG CYS SEQRES 12 A 245 ASP PRO ASP TYR VAL PRO HIS ASP VAL ILE ARG ILE VAL SEQRES 13 A 245 GLU PRO SER TRP VAL GLY SER ASN ASN GLU TYR ARG ILE SEQRES 14 A 245 SER LEU ALA LYS LYS GLY GLY GLY CYS PRO ILE MSE ASN SEQRES 15 A 245 LEU HIS SER GLU TYR THR ASN SER PHE GLU GLN PHE ILE SEQRES 16 A 245 ASP ARG VAL ILE TRP GLU ASN PHE TYR LYS PRO ILE VAL SEQRES 17 A 245 TYR ILE GLY THR ASP SER ALA GLU GLU GLU GLU ILE LEU SEQRES 18 A 245 LEU GLU VAL SER LEU VAL PHE LYS VAL LYS GLU PHE ALA SEQRES 19 A 245 PRO ASP ALA PRO LEU PHE THR GLY PRO ALA TYR MODRES 3JW6 MSE A 83 MET MODIFIED RESIDUE MODRES 3JW6 MSE A 103 MET MODIFIED RESIDUE MODRES 3JW6 MSE A 116 MET MODIFIED RESIDUE MODRES 3JW6 MSE A 124 MET MODIFIED RESIDUE HET MSE A 83 8 HET MSE A 103 13 HET MSE A 116 8 HET MSE A 124 8 HET EDO A 246 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *74(H2 O) HELIX 1 1 ASN A 23 ILE A 28 1 6 HELIX 2 2 PRO A 49 TYR A 53 5 5 HELIX 3 3 LYS A 90 PHE A 107 1 18 HELIX 4 4 SER A 190 ARG A 197 1 8 SHEET 1 A 2 THR A 13 TYR A 16 0 SHEET 2 A 2 LYS A 19 LYS A 22 -1 O TYR A 21 N TYR A 14 SHEET 1 B 4 LYS A 65 VAL A 78 0 SHEET 2 B 4 GLU A 218 PHE A 233 -1 O LEU A 222 N GLU A 74 SHEET 3 B 4 ASP A 112 PRO A 126 -1 N VAL A 121 O SER A 225 SHEET 4 B 4 GLU A 166 SER A 170 -1 O ILE A 169 N LEU A 120 SHEET 1 C 5 VAL A 152 ARG A 154 0 SHEET 2 C 5 THR A 82 LEU A 85 -1 N MSE A 83 O ILE A 153 SHEET 3 C 5 ILE A 207 THR A 212 -1 O ILE A 210 N LYS A 84 SHEET 4 C 5 PHE A 135 ALA A 140 -1 N LEU A 136 O GLY A 211 SHEET 5 C 5 SER A 159 TRP A 160 -1 O SER A 159 N ALA A 137 SSBOND 1 CYS A 132 CYS A 132 1555 4566 2.42 LINK C THR A 82 N MSE A 83 1555 1555 1.35 LINK C MSE A 83 N LYS A 84 1555 1555 1.34 LINK C PHE A 102 N MSE A 103 1555 1555 1.35 LINK C MSE A 103 N GLU A 104 1555 1555 1.35 LINK C VAL A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ASP A 117 1555 1555 1.35 LINK C ASN A 123 N MSE A 124 1555 1555 1.34 LINK C MSE A 124 N ARG A 125 1555 1555 1.33 CISPEP 1 PHE A 107 PRO A 108 0 -0.40 CISPEP 2 PHE A 107 PRO A 108 0 0.53 CISPEP 3 GLY A 242 PRO A 243 0 -2.34 SITE 1 AC1 4 ARG A 154 VAL A 156 GLU A 232 HOH A 284 CRYST1 103.183 103.183 103.183 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009692 0.00000