HEADER TRANSCRIPTION 18-SEP-09 3JWP TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM SIR2A (PF13_0152) IN TITLE 2 COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN SIR2 HOMOLOGUE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF13_0152, SIR2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PET15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15MLH KEYWDS MALARIA, TRANSCRIPTION REGULATION, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,A.HUTCHINSON,Y.H.LIN,F.MACKENZIE,G.SENISTERRA,A.ALLALI- AUTHOR 2 HASSANALI,M.VEDADI,M.RAVICHANDRAN,D.COSSAR,I.KOZIERADZKI,Y.ZHAO, AUTHOR 3 M.SCHAPIRA,C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT,A.M.EDWARDS,R.HUI, AUTHOR 4 W.QIU,V.BRAND,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 01-NOV-17 3JWP 1 REMARK REVDAT 2 13-JUL-11 3JWP 1 VERSN REVDAT 1 20-OCT-09 3JWP 0 JRNL AUTH A.K.WERNIMONT,A.HUTCHINSON,Y.H.LIN,F.MACKENZIE,G.SENISTERRA, JRNL AUTH 2 A.ALLALI-HASSANALI,M.VEDADI,M.RAVICHANDRAN,D.COSSAR, JRNL AUTH 3 I.KOZIERADZKI,Y.ZHAO,M.SCHAPIRA,C.H.ARROWSMITH,C.BOUNTRA, JRNL AUTH 4 J.WEIGELT,A.M.EDWARDS,R.HUI,W.QIU,V.BRAND JRNL TITL CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM SIR2A (PF13_0152) JRNL TITL 2 IN COMPLEX WITH AMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 8584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 81.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1958 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1222 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2670 ; 1.103 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3010 ; 0.814 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 5.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;39.069 ;25.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;16.001 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;25.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2164 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 0.285 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 517 ; 0.041 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2038 ; 0.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 692 ; 0.798 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 632 ; 1.304 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): -35.7140 9.5490 -27.4797 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.1997 REMARK 3 T33: 0.4113 T12: 0.0641 REMARK 3 T13: 0.1151 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 5.1401 L22: 4.9507 REMARK 3 L33: 5.2181 L12: -1.2886 REMARK 3 L13: -0.2505 L23: 1.6356 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.3141 S13: -0.7747 REMARK 3 S21: -0.5002 S22: -0.1060 S23: -0.4740 REMARK 3 S31: 0.5399 S32: 0.2964 S33: 0.0343 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): -41.0729 27.4003 -2.9355 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.4877 REMARK 3 T33: 0.1942 T12: -0.1056 REMARK 3 T13: 0.0286 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 7.2913 L22: 8.0622 REMARK 3 L33: 2.9663 L12: 1.3145 REMARK 3 L13: 0.8892 L23: 0.6072 REMARK 3 S TENSOR REMARK 3 S11: 0.5843 S12: -1.0524 S13: -0.2055 REMARK 3 S21: 0.2846 S22: -0.5975 S23: 0.2241 REMARK 3 S31: 0.0784 S32: -0.0472 S33: 0.0132 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -26.1583 19.2492 -13.6769 REMARK 3 T TENSOR REMARK 3 T11: 0.4979 T22: 0.5060 REMARK 3 T33: 0.6842 T12: -0.1535 REMARK 3 T13: 0.1150 T23: 0.1150 REMARK 3 L TENSOR REMARK 3 L11: 3.6555 L22: 8.5221 REMARK 3 L33: 8.5793 L12: -2.1810 REMARK 3 L13: 1.7933 L23: 10.3225 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.4142 S13: -0.2133 REMARK 3 S21: 0.2480 S22: 0.7843 S23: -1.1594 REMARK 3 S31: 0.0557 S32: 1.2490 S33: -0.8939 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): -31.4506 24.6831 -20.5978 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.2151 REMARK 3 T33: 0.3664 T12: -0.0488 REMARK 3 T13: 0.0831 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 5.2706 L22: 5.8225 REMARK 3 L33: 7.9474 L12: -1.6834 REMARK 3 L13: 0.5059 L23: 2.2399 REMARK 3 S TENSOR REMARK 3 S11: -0.2339 S12: 0.0630 S13: -0.0886 REMARK 3 S21: -0.2023 S22: 0.3000 S23: -0.8524 REMARK 3 S31: -0.0274 S32: 0.1754 S33: -0.0662 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -31.5057 38.5751 -6.6726 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.4287 REMARK 3 T33: 0.2671 T12: -0.0539 REMARK 3 T13: 0.0148 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 5.1488 L22: 4.2301 REMARK 3 L33: 0.6959 L12: 2.3477 REMARK 3 L13: 0.4348 L23: 0.0515 REMARK 3 S TENSOR REMARK 3 S11: 0.2743 S12: -0.2127 S13: -0.2887 REMARK 3 S21: 0.1426 S22: -0.5077 S23: -0.1446 REMARK 3 S31: 0.1301 S32: 0.0640 S33: 0.2334 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -43.0261 21.4643 -27.5639 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.2344 REMARK 3 T33: 0.1984 T12: -0.0114 REMARK 3 T13: 0.0979 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 5.4909 L22: 4.6958 REMARK 3 L33: 5.4067 L12: -0.1383 REMARK 3 L13: 1.6489 L23: 0.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.3530 S13: -0.0110 REMARK 3 S21: -0.4602 S22: 0.0473 S23: -0.2605 REMARK 3 S31: -0.2804 S32: -0.3713 S33: -0.0698 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): -36.7990 7.6769 -23.8438 REMARK 3 T TENSOR REMARK 3 T11: 0.5240 T22: 0.1695 REMARK 3 T33: 0.4648 T12: -0.0464 REMARK 3 T13: 0.0552 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 6.8091 L22: 5.2720 REMARK 3 L33: 6.0772 L12: -0.5810 REMARK 3 L13: 0.7184 L23: -1.0439 REMARK 3 S TENSOR REMARK 3 S11: -0.1231 S12: -0.2012 S13: -1.0037 REMARK 3 S21: -0.4602 S22: 0.1701 S23: -0.1573 REMARK 3 S31: 0.8088 S32: -0.0430 S33: -0.0470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3JWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-09; 01-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; CHESS REMARK 200 BEAMLINE : A1; A1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : .978; .978 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : 0.91400 REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17 % PEG 3350, 0.1 M NACITRATE PH 5.7, REMARK 280 0.1 MM BETA-OG, 2.6 MM AMP, 2.6 MM REMARK 280 PEPTIDE(SGRGKACGGKACGLGKACGGAKACRHR) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -53.28200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 92.28713 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -106.56400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 257 REMARK 465 SER A 258 REMARK 465 GLU A 259 REMARK 465 LYS A 260 REMARK 465 ASN A 261 REMARK 465 LYS A 262 REMARK 465 LYS A 263 REMARK 465 ILE A 264 REMARK 465 MSE A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 NZ REMARK 470 LYS A 15 CD CE NZ REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 SER A 43 OG REMARK 470 SER A 44 OG REMARK 470 ARG A 54 CD NE CZ NH1 NH2 REMARK 470 ILE A 55 CG1 CG2 CD1 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 TYR A 99 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 102 OG REMARK 470 SER A 115 OG REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 148 CD CE NZ REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 SER A 179 OG REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 191 CE NZ REMARK 470 SER A 201 OG REMARK 470 SER A 202 OG REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 217 CD CE NZ REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 22 73.49 -153.07 REMARK 500 ARG A 41 -138.29 -121.17 REMARK 500 SER A 44 -40.52 81.32 REMARK 500 THR A 200 -161.24 -163.11 REMARK 500 SER A 205 -178.68 -170.43 REMARK 500 LYS A 234 -53.52 -145.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 132 SG REMARK 620 2 CYS A 135 SG 112.3 REMARK 620 3 CYS A 160 SG 104.5 105.9 REMARK 620 4 CYS A 162 SG 99.2 120.6 113.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 267 DBREF 3JWP A 2 265 UNP Q8IE47 Q8IE47_PLAF7 10 273 SEQADV 3JWP GLY A 1 UNP Q8IE47 EXPRESSION TAG SEQRES 1 A 265 GLY LYS LYS ASP THR GLN SER ILE THR LEU GLU GLU LEU SEQRES 2 A 265 ALA LYS ILE ILE LYS LYS CYS LYS HIS VAL VAL ALA LEU SEQRES 3 A 265 THR GLY SER GLY THR SER ALA GLU SER ASN ILE PRO SER SEQRES 4 A 265 PHE ARG GLY SER SER ASN SER ILE TRP SER LYS TYR ASP SEQRES 5 A 265 PRO ARG ILE TYR GLY THR ILE TRP GLY PHE TRP LYS TYR SEQRES 6 A 265 PRO GLU LYS ILE TRP GLU VAL ILE ARG ASP ILE SER SER SEQRES 7 A 265 ASP TYR GLU ILE GLU ILE ASN ASN GLY HIS VAL ALA LEU SEQRES 8 A 265 SER THR LEU GLU SER LEU GLY TYR LEU LYS SER VAL VAL SEQRES 9 A 265 THR GLN ASN VAL ASP GLY LEU HIS GLU ALA SER GLY ASN SEQRES 10 A 265 THR LYS VAL ILE SER LEU HIS GLY ASN VAL PHE GLU ALA SEQRES 11 A 265 VAL CYS CYS THR CYS ASN LYS ILE VAL LYS LEU ASN LYS SEQRES 12 A 265 ILE MSE LEU GLN LYS THR SER HIS PHE MSE HIS GLN LEU SEQRES 13 A 265 PRO PRO GLU CYS PRO CYS GLY GLY ILE PHE LYS PRO ASN SEQRES 14 A 265 ILE ILE LEU PHE GLY GLU VAL VAL SER SER ASP LEU LEU SEQRES 15 A 265 LYS GLU ALA GLU GLU GLU ILE ALA LYS CYS ASP LEU LEU SEQRES 16 A 265 LEU VAL ILE GLY THR SER SER THR VAL SER THR ALA THR SEQRES 17 A 265 ASN LEU CYS HIS PHE ALA CYS LYS LYS LYS LYS LYS ILE SEQRES 18 A 265 VAL GLU ILE ASN ILE SER LYS THR TYR ILE THR ASN LYS SEQRES 19 A 265 MSE SER ASP TYR HIS VAL CYS ALA LYS PHE SER GLU LEU SEQRES 20 A 265 THR LYS VAL ALA ASN ILE LEU LYS GLY SER SER GLU LYS SEQRES 21 A 265 ASN LYS LYS ILE MSE MODRES 3JWP MSE A 145 MET SELENOMETHIONINE MODRES 3JWP MSE A 153 MET SELENOMETHIONINE MODRES 3JWP MSE A 235 MET SELENOMETHIONINE HET MSE A 145 8 HET MSE A 153 8 HET MSE A 235 8 HET AMP A 266 23 HET ZN A2001 1 HET PGE A 267 10 HETNAM MSE SELENOMETHIONINE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 ZN ZN 2+ FORMUL 4 PGE C6 H14 O4 FORMUL 5 HOH *3(H2 O) HELIX 1 1 THR A 9 CYS A 20 1 12 HELIX 2 2 SER A 29 ASN A 36 5 8 HELIX 3 3 SER A 46 LYS A 50 5 5 HELIX 4 4 ASP A 52 GLY A 57 1 6 HELIX 5 5 THR A 58 TYR A 65 1 8 HELIX 6 6 GLU A 67 TYR A 80 1 14 HELIX 7 7 ASN A 85 LEU A 97 1 13 HELIX 8 8 GLY A 110 GLY A 116 1 7 HELIX 9 9 ASN A 142 GLN A 147 1 6 HELIX 10 10 SER A 178 LYS A 191 1 14 HELIX 11 11 SER A 205 LYS A 217 1 13 HELIX 12 12 LYS A 243 GLU A 246 5 4 HELIX 13 13 LEU A 247 GLY A 256 1 10 SHEET 1 A 7 GLN A 6 ILE A 8 0 SHEET 2 A 7 TYR A 238 CYS A 241 1 O HIS A 239 N ILE A 8 SHEET 3 A 7 ILE A 221 ASN A 225 1 N GLU A 223 O VAL A 240 SHEET 4 A 7 LEU A 194 ILE A 198 1 N LEU A 195 O VAL A 222 SHEET 5 A 7 VAL A 23 THR A 27 1 N LEU A 26 O LEU A 196 SHEET 6 A 7 LEU A 100 THR A 105 1 O LYS A 101 N VAL A 23 SHEET 7 A 7 VAL A 120 SER A 122 1 O ILE A 121 N THR A 105 SHEET 1 B 3 ILE A 138 LYS A 140 0 SHEET 2 B 3 GLY A 125 CYS A 132 -1 N ALA A 130 O VAL A 139 SHEET 3 B 3 PHE A 166 ILE A 170 -1 O ASN A 169 N GLU A 129 LINK C ILE A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N LEU A 146 1555 1555 1.33 LINK C PHE A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N HIS A 154 1555 1555 1.33 LINK C LYS A 234 N MSE A 235 1555 1555 1.34 LINK C MSE A 235 N SER A 236 1555 1555 1.33 LINK SG CYS A 132 ZN ZN A2001 1555 1555 2.39 LINK SG CYS A 135 ZN ZN A2001 1555 1555 2.28 LINK SG CYS A 160 ZN ZN A2001 1555 1555 2.34 LINK SG CYS A 162 ZN ZN A2001 1555 1555 2.31 CISPEP 1 LEU A 156 PRO A 157 0 -2.41 SITE 1 AC1 12 SER A 29 GLY A 30 GLU A 34 ARG A 41 SITE 2 AC1 12 GLY A 199 THR A 200 SER A 202 ASN A 225 SITE 3 AC1 12 ILE A 226 SER A 227 LYS A 243 PHE A 244 SITE 1 AC2 4 CYS A 132 CYS A 135 CYS A 160 CYS A 162 SITE 1 AC3 2 PHE A 40 ILE A 171 CRYST1 106.564 106.564 44.968 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009384 0.005418 0.000000 0.00000 SCALE2 0.000000 0.010836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022238 0.00000