HEADER MEMBRANE PROTEIN 19-SEP-09 3JXJ TITLE CRYSTAL STRUCTURE OF THE CHICKEN TRPV4 ANKYRIN REPEAT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VANILLOID RECEPTOR-RELATED OSMOTICALLY ACTIVATED CHANNEL COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 133-382, ANKYRIN REPEAT DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: TRPV4, VR-OAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-C6H KEYWDS ANKYRIN REPEATS, ANK REPEAT, ION TRANSPORT, IONIC CHANNEL, RECEPTOR, KEYWDS 2 TRANSMEMBRANE, TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.B.PHELPS,S.S.CHOO,R.GAUDET REVDAT 6 20-MAR-24 3JXJ 1 REMARK ATOM REVDAT 5 06-SEP-23 3JXJ 1 REMARK SEQADV REVDAT 4 01-NOV-17 3JXJ 1 REMARK REVDAT 3 13-JUL-11 3JXJ 1 VERSN REVDAT 2 09-FEB-10 3JXJ 1 JRNL REVDAT 1 22-DEC-09 3JXJ 0 JRNL AUTH G.LANDOURE,A.A.ZDEBIK,T.L.MARTINEZ,B.G.BURNETT,H.C.STANESCU, JRNL AUTH 2 H.INADA,Y.SHI,A.A.TAYE,L.KONG,C.H.MUNNS,S.S.CHOO,C.B.PHELPS, JRNL AUTH 3 R.PAUDEL,H.HOULDEN,C.L.LUDLOW,M.J.CATERINA,R.GAUDET,R.KLETA, JRNL AUTH 4 K.H.FISCHBECK,C.J.SUMNER JRNL TITL MUTATIONS IN TRPV4 CAUSE CHARCOT-MARIE-TOOTH DISEASE TYPE JRNL TITL 2 2C. JRNL REF NAT.GENET. V. 42 170 2010 JRNL REFN ISSN 1061-4036 JRNL PMID 20037586 JRNL DOI 10.1038/NG.512 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.7 REMARK 3 NUMBER OF REFLECTIONS : 14136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.501 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.451 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4108 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2848 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5557 ; 1.079 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6924 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 5.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;30.839 ;23.177 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;13.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;12.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4559 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 853 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2534 ; 0.448 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1027 ; 0.067 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4074 ; 0.877 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1574 ; 1.314 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1477 ; 2.342 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9180 9.5370 78.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.1835 REMARK 3 T33: 0.0470 T12: -0.1529 REMARK 3 T13: 0.0965 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 6.5558 L22: 8.0935 REMARK 3 L33: 12.1752 L12: -3.0561 REMARK 3 L13: 1.2867 L23: 2.4792 REMARK 3 S TENSOR REMARK 3 S11: 0.3556 S12: -0.6887 S13: 0.1611 REMARK 3 S21: 0.6993 S22: -0.2721 S23: 0.1238 REMARK 3 S31: -0.2240 S32: -0.1572 S33: -0.0836 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5320 7.7680 66.5220 REMARK 3 T TENSOR REMARK 3 T11: 0.2011 T22: 0.2078 REMARK 3 T33: 0.0969 T12: -0.0844 REMARK 3 T13: -0.0083 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 7.7304 L22: 3.8959 REMARK 3 L33: 10.3234 L12: -0.8516 REMARK 3 L13: -2.6038 L23: 2.2159 REMARK 3 S TENSOR REMARK 3 S11: 0.1981 S12: -0.2654 S13: 0.0192 REMARK 3 S21: -0.0413 S22: -0.3052 S23: 0.3590 REMARK 3 S31: 0.1352 S32: -0.5672 S33: 0.1071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9410 2.9020 56.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.2507 T22: 0.2736 REMARK 3 T33: 0.1125 T12: -0.1371 REMARK 3 T13: 0.0689 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 13.0084 L22: 5.1681 REMARK 3 L33: 9.0512 L12: -1.9147 REMARK 3 L13: -1.3076 L23: 1.7158 REMARK 3 S TENSOR REMARK 3 S11: -0.3027 S12: 0.3272 S13: -0.9097 REMARK 3 S21: -0.0179 S22: 0.0251 S23: -0.1743 REMARK 3 S31: 0.9259 S32: -0.3554 S33: 0.2777 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 306 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2450 -2.1710 39.6380 REMARK 3 T TENSOR REMARK 3 T11: 0.3784 T22: 0.4590 REMARK 3 T33: 0.1915 T12: -0.0798 REMARK 3 T13: 0.1840 T23: -0.1089 REMARK 3 L TENSOR REMARK 3 L11: 5.8414 L22: 6.4039 REMARK 3 L33: 9.5394 L12: -0.0191 REMARK 3 L13: 3.0476 L23: 0.7307 REMARK 3 S TENSOR REMARK 3 S11: -0.1481 S12: -0.0344 S13: -0.7006 REMARK 3 S21: 0.2501 S22: -0.3942 S23: 0.1173 REMARK 3 S31: 1.1664 S32: -0.9422 S33: 0.5423 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 391 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7240 5.3890 32.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.3187 T22: 0.3544 REMARK 3 T33: 0.2491 T12: 0.0732 REMARK 3 T13: 0.0592 T23: 0.1267 REMARK 3 L TENSOR REMARK 3 L11: 3.3282 L22: 1.3723 REMARK 3 L33: 6.6650 L12: 1.4711 REMARK 3 L13: -1.2413 L23: 1.5664 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: 0.0265 S13: 0.2486 REMARK 3 S21: -0.0143 S22: -0.2003 S23: 0.1812 REMARK 3 S31: -0.2788 S32: -0.5915 S33: 0.0825 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8300 11.9190 -23.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.1967 REMARK 3 T33: 0.0485 T12: -0.1094 REMARK 3 T13: 0.0062 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.9352 L22: 8.5447 REMARK 3 L33: 11.4373 L12: 3.1794 REMARK 3 L13: 1.4408 L23: -0.5703 REMARK 3 S TENSOR REMARK 3 S11: -0.1828 S12: 0.4963 S13: 0.2407 REMARK 3 S21: -0.7809 S22: 0.2867 S23: 0.1580 REMARK 3 S31: 0.5549 S32: -0.0896 S33: -0.1039 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 176 B 222 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2120 9.3620 -11.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.3474 T22: 0.1188 REMARK 3 T33: 0.1232 T12: -0.0792 REMARK 3 T13: 0.0151 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 6.5874 L22: 3.0710 REMARK 3 L33: 7.6888 L12: 1.3956 REMARK 3 L13: 0.0020 L23: -1.7349 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.0244 S13: -0.0312 REMARK 3 S21: -0.2131 S22: -0.1178 S23: -0.0245 REMARK 3 S31: 0.4152 S32: 0.0103 S33: 0.0567 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 223 B 269 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9120 6.6410 -2.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.1087 REMARK 3 T33: 0.0882 T12: -0.0047 REMARK 3 T13: 0.0014 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 10.6952 L22: 5.4308 REMARK 3 L33: 9.1294 L12: 1.9364 REMARK 3 L13: -3.0266 L23: -1.7592 REMARK 3 S TENSOR REMARK 3 S11: -0.3595 S12: 0.1721 S13: -0.4766 REMARK 3 S21: -0.1873 S22: 0.1074 S23: -0.0883 REMARK 3 S31: 0.5066 S32: 0.0044 S33: 0.2521 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 306 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6010 -2.2280 14.0820 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.2430 REMARK 3 T33: 0.2424 T12: 0.0990 REMARK 3 T13: 0.0741 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 2.0613 L22: 7.3817 REMARK 3 L33: 6.4907 L12: 0.2930 REMARK 3 L13: -1.0380 L23: 1.4313 REMARK 3 S TENSOR REMARK 3 S11: -0.4469 S12: -0.1487 S13: -0.4247 REMARK 3 S21: 0.2302 S22: 0.3390 S23: 0.0661 REMARK 3 S31: 1.0076 S32: 0.4942 S33: 0.1080 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 335 B 391 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0000 4.7020 22.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.3150 T22: 0.2007 REMARK 3 T33: 0.1894 T12: 0.0377 REMARK 3 T13: 0.0714 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.2694 L22: 2.0350 REMARK 3 L33: 7.3033 L12: -0.7188 REMARK 3 L13: -0.3241 L23: -2.9708 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.1945 S13: 0.1078 REMARK 3 S21: 0.1094 S22: -0.1109 S23: -0.2090 REMARK 3 S31: 0.1642 S32: 0.2948 S33: 0.0781 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6900 9.0510 47.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.4397 REMARK 3 T33: 0.1627 T12: 0.0262 REMARK 3 T13: 0.0918 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.8446 L22: 4.0255 REMARK 3 L33: 9.0584 L12: 0.1087 REMARK 3 L13: -4.2993 L23: 0.6561 REMARK 3 S TENSOR REMARK 3 S11: 0.3009 S12: 0.5494 S13: 0.2163 REMARK 3 S21: -0.0507 S22: -0.1767 S23: 0.3687 REMARK 3 S31: -0.4231 S32: -1.2819 S33: -0.1242 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 270 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4480 9.1110 7.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.1781 REMARK 3 T33: 0.1439 T12: 0.0750 REMARK 3 T13: 0.0412 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 7.9010 L22: 1.5513 REMARK 3 L33: 9.9446 L12: 2.0000 REMARK 3 L13: -2.4276 L23: 0.4794 REMARK 3 S TENSOR REMARK 3 S11: -0.1658 S12: -0.2995 S13: 0.0875 REMARK 3 S21: -0.0183 S22: 0.2768 S23: -0.2168 REMARK 3 S31: -0.1609 S32: 0.7290 S33: -0.1109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3JXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14247 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: TRPV4-ARD (3JXI) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.025 M KH2PO4, 7% MPD, 7% PEG8000, REMARK 280 AND 5 MM DTT, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.88550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.34850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.66650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.34850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.88550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.66650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 GLN B 260 REMARK 465 PRO B 261 REMARK 465 LYS B 262 REMARK 465 ASP B 263 REMARK 465 GLU B 264 REMARK 465 GLY B 265 REMARK 465 GLY B 266 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 132 CG SD CE REMARK 470 HIS A 387 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 388 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 132 CG SD CE REMARK 470 PHE B 259 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 387 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 219 NH1 ARG A 257 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 208 29.78 -153.50 REMARK 500 ARG A 235 46.93 71.21 REMARK 500 ARG A 257 -105.32 -113.00 REMARK 500 GLU A 264 110.85 -32.45 REMARK 500 TYR A 267 -82.89 -84.35 REMARK 500 PHE A 268 95.98 57.32 REMARK 500 GLU A 272 -46.49 76.64 REMARK 500 ASN A 320 61.76 -103.93 REMARK 500 ALA A 385 36.57 -90.07 REMARK 500 ASN B 208 33.57 -157.01 REMARK 500 TYR B 221 -38.64 -132.14 REMARK 500 ARG B 257 -21.96 -141.92 REMARK 500 GLU B 272 -53.52 73.18 REMARK 500 ASN B 282 72.55 62.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 259 GLN A 260 -149.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PNN RELATED DB: PDB REMARK 900 TRPV1 ANKYRIN REPEATS REMARK 900 RELATED ID: 2ETB RELATED DB: PDB REMARK 900 TRPV2 ANKYRIN REPEATS REMARK 900 RELATED ID: 2RFA RELATED DB: PDB REMARK 900 TRPV6 ANKYRIN REPEATS REMARK 900 RELATED ID: 3JXI RELATED DB: PDB REMARK 900 TRPV4 ANKYRIN REPEATS, OTHER CRYSTAL FORM DBREF 3JXJ A 133 382 UNP Q9DFS3 Q9DFS3_CHICK 133 382 DBREF 3JXJ B 133 382 UNP Q9DFS3 Q9DFS3_CHICK 133 382 SEQADV 3JXJ MET A 132 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ ALA A 383 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ ALA A 384 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ ALA A 385 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS A 386 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS A 387 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS A 388 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS A 389 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS A 390 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS A 391 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ MET B 132 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ ALA B 383 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ ALA B 384 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ ALA B 385 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS B 386 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS B 387 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS B 388 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS B 389 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS B 390 UNP Q9DFS3 EXPRESSION TAG SEQADV 3JXJ HIS B 391 UNP Q9DFS3 EXPRESSION TAG SEQRES 1 A 260 MET LYS VAL PHE ASN ARG PRO ILE LEU PHE ASP ILE VAL SEQRES 2 A 260 SER ARG GLY SER PRO ASP GLY LEU GLU GLY LEU LEU SER SEQRES 3 A 260 PHE LEU LEU THR HIS LYS LYS ARG LEU THR ASP GLU GLU SEQRES 4 A 260 PHE ARG GLU PRO SER THR GLY LYS THR CYS LEU PRO LYS SEQRES 5 A 260 ALA LEU LEU ASN LEU SER ALA GLY ARG ASN ASP THR ILE SEQRES 6 A 260 PRO ILE LEU LEU ASP ILE ALA GLU LYS THR GLY ASN MET SEQRES 7 A 260 ARG GLU PHE ILE ASN SER PRO PHE ARG ASP VAL TYR TYR SEQRES 8 A 260 ARG GLY GLN THR ALA LEU HIS ILE ALA ILE GLU ARG ARG SEQRES 9 A 260 CYS LYS HIS TYR VAL GLU LEU LEU VAL GLU LYS GLY ALA SEQRES 10 A 260 ASP VAL HIS ALA GLN ALA ARG GLY ARG PHE PHE GLN PRO SEQRES 11 A 260 LYS ASP GLU GLY GLY TYR PHE TYR PHE GLY GLU LEU PRO SEQRES 12 A 260 LEU SER LEU ALA ALA CYS THR ASN GLN PRO HIS ILE VAL SEQRES 13 A 260 HIS TYR LEU THR GLU ASN GLY HIS LYS GLN ALA ASP LEU SEQRES 14 A 260 ARG ARG GLN ASP SER ARG GLY ASN THR VAL LEU HIS ALA SEQRES 15 A 260 LEU VAL ALA ILE ALA ASP ASN THR ARG GLU ASN THR LYS SEQRES 16 A 260 PHE VAL THR LYS MET TYR ASP LEU LEU LEU ILE LYS CYS SEQRES 17 A 260 ALA LYS LEU PHE PRO ASP THR ASN LEU GLU ALA LEU LEU SEQRES 18 A 260 ASN ASN ASP GLY LEU SER PRO LEU MET MET ALA ALA LYS SEQRES 19 A 260 THR GLY LYS ILE GLY ILE PHE GLN HIS ILE ILE ARG ARG SEQRES 20 A 260 GLU ILE ALA ASP ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 260 MET LYS VAL PHE ASN ARG PRO ILE LEU PHE ASP ILE VAL SEQRES 2 B 260 SER ARG GLY SER PRO ASP GLY LEU GLU GLY LEU LEU SER SEQRES 3 B 260 PHE LEU LEU THR HIS LYS LYS ARG LEU THR ASP GLU GLU SEQRES 4 B 260 PHE ARG GLU PRO SER THR GLY LYS THR CYS LEU PRO LYS SEQRES 5 B 260 ALA LEU LEU ASN LEU SER ALA GLY ARG ASN ASP THR ILE SEQRES 6 B 260 PRO ILE LEU LEU ASP ILE ALA GLU LYS THR GLY ASN MET SEQRES 7 B 260 ARG GLU PHE ILE ASN SER PRO PHE ARG ASP VAL TYR TYR SEQRES 8 B 260 ARG GLY GLN THR ALA LEU HIS ILE ALA ILE GLU ARG ARG SEQRES 9 B 260 CYS LYS HIS TYR VAL GLU LEU LEU VAL GLU LYS GLY ALA SEQRES 10 B 260 ASP VAL HIS ALA GLN ALA ARG GLY ARG PHE PHE GLN PRO SEQRES 11 B 260 LYS ASP GLU GLY GLY TYR PHE TYR PHE GLY GLU LEU PRO SEQRES 12 B 260 LEU SER LEU ALA ALA CYS THR ASN GLN PRO HIS ILE VAL SEQRES 13 B 260 HIS TYR LEU THR GLU ASN GLY HIS LYS GLN ALA ASP LEU SEQRES 14 B 260 ARG ARG GLN ASP SER ARG GLY ASN THR VAL LEU HIS ALA SEQRES 15 B 260 LEU VAL ALA ILE ALA ASP ASN THR ARG GLU ASN THR LYS SEQRES 16 B 260 PHE VAL THR LYS MET TYR ASP LEU LEU LEU ILE LYS CYS SEQRES 17 B 260 ALA LYS LEU PHE PRO ASP THR ASN LEU GLU ALA LEU LEU SEQRES 18 B 260 ASN ASN ASP GLY LEU SER PRO LEU MET MET ALA ALA LYS SEQRES 19 B 260 THR GLY LYS ILE GLY ILE PHE GLN HIS ILE ILE ARG ARG SEQRES 20 B 260 GLU ILE ALA ASP ALA ALA ALA HIS HIS HIS HIS HIS HIS HET PO4 A 401 5 HET PO4 B 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) HELIX 1 1 ASN A 136 GLY A 147 1 12 HELIX 2 2 SER A 148 GLU A 153 5 6 HELIX 3 3 GLY A 154 LYS A 163 1 10 HELIX 4 4 ASP A 168 ARG A 172 5 5 HELIX 5 5 THR A 179 ASN A 187 1 9 HELIX 6 6 THR A 195 THR A 206 1 12 HELIX 7 7 ASN A 208 ASN A 214 1 7 HELIX 8 8 THR A 226 ARG A 234 1 9 HELIX 9 9 CYS A 236 LYS A 246 1 11 HELIX 10 10 LEU A 273 CYS A 280 1 8 HELIX 11 11 GLN A 283 ASN A 293 1 11 HELIX 12 12 THR A 309 ALA A 318 1 10 HELIX 13 13 THR A 321 PHE A 343 1 23 HELIX 14 14 ASN A 347 LEU A 351 5 5 HELIX 15 15 SER A 358 GLY A 367 1 10 HELIX 16 16 LYS A 368 ALA A 383 1 16 HELIX 17 17 ASN B 136 GLY B 147 1 12 HELIX 18 18 PRO B 149 GLU B 153 5 5 HELIX 19 19 GLY B 154 HIS B 162 1 9 HELIX 20 20 ASP B 168 ARG B 172 5 5 HELIX 21 21 THR B 179 ASN B 187 1 9 HELIX 22 22 ASP B 194 THR B 206 1 13 HELIX 23 23 ASN B 208 ASN B 214 1 7 HELIX 24 24 THR B 226 ARG B 234 1 9 HELIX 25 25 CYS B 236 LYS B 246 1 11 HELIX 26 26 LEU B 273 THR B 281 1 9 HELIX 27 27 GLN B 283 ASN B 293 1 11 HELIX 28 28 THR B 309 ALA B 318 1 10 HELIX 29 29 THR B 321 PHE B 343 1 23 HELIX 30 30 ASN B 347 LEU B 351 5 5 HELIX 31 31 SER B 358 THR B 366 1 9 HELIX 32 32 LYS B 368 ALA B 384 1 17 SHEET 1 A 2 TYR A 222 ARG A 223 0 SHEET 2 A 2 ARG A 255 GLY A 256 -1 O ARG A 255 N ARG A 223 SHEET 1 B 2 TYR B 222 ARG B 223 0 SHEET 2 B 2 ARG B 255 GLY B 256 -1 O ARG B 255 N ARG B 223 SITE 1 AC1 6 ARG B 255 GLY B 256 TYR B 267 TYR B 269 SITE 2 AC1 6 GLU B 272 ARG B 306 SITE 1 AC2 6 GLY A 256 TYR A 267 TYR A 269 GLU A 272 SITE 2 AC2 6 SER A 305 ARG A 306 CRYST1 47.771 77.333 186.697 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005356 0.00000