HEADER BIOSYNTHETIC PROTEIN 21-SEP-09 3JXP TITLE CRYSTAL STRUCTURE OF THE COENZYME PQQ SYNTHESIS PROTEIN (PQQB) FROM TITLE 2 PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME PQQ SYNTHESIS PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYRROLOQUINOLINE QUINONE BIOSYNTHESIS PROTEIN B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 STRAIN: KT2440; SOURCE 5 GENE: PP_0379, PQQB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALPHA-BETA PROTEIN, PQQ BIOSYNTHESIS, TRANSPORT, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.METLITZKY,R.SCHWARZENBACHER REVDAT 5 06-SEP-23 3JXP 1 REMARK REVDAT 4 13-OCT-21 3JXP 1 REMARK SEQADV REVDAT 3 16-OCT-13 3JXP 1 JRNL REVDAT 2 13-JUL-11 3JXP 1 VERSN REVDAT 1 22-SEP-10 3JXP 0 JRNL AUTH M.METLITZKY,S.PUEHRINGER,S.J.FISHER JRNL TITL CRYSTAL STRUCTURE OF PQQB FROM PSEUDOMONAS PUTIDA AT 2.2 A JRNL TITL 2 RESOLUTION JRNL REF J. BIOPHYS. CHEM. V. 3 206 2012 JRNL REFN ISSN 2153-036X JRNL DOI 10.4236/JBPC.2012.32023 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2408 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3273 ; 1.522 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.385 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;39.124 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;15.759 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1876 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1026 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1582 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.460 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 1.040 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 1.724 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 965 ; 2.515 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 847 ; 3.768 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 67.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1XTO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HYDROCHLORIDE PH 8.5, 0.2 M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, 15% W/V PEG 4,000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.70300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.10450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.10450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.05450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.10450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.10450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.35150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.10450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.10450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.05450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.10450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.10450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.35150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.70300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLU A 241 REMARK 465 GLU A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 LEU A 312 REMARK 465 GLU A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 172 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 172 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 177 O HOH A 491 1.95 REMARK 500 OD1 ASP A 278 O HOH A 431 2.12 REMARK 500 O HOH A 459 O HOH A 474 2.13 REMARK 500 O ARG A 61 O HOH A 451 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 458 O HOH A 473 7555 1.38 REMARK 500 O HOH A 451 O HOH A 476 7555 1.51 REMARK 500 O HOH A 461 O HOH A 477 7555 1.82 REMARK 500 O HOH A 457 O HOH A 473 7555 1.90 REMARK 500 O HOH A 468 O HOH A 477 7555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 128.23 -38.46 REMARK 500 SER A 41 133.94 -177.74 REMARK 500 ASN A 55 141.41 73.85 REMARK 500 ASP A 88 -178.96 -170.13 REMARK 500 THR A 120 -83.86 -131.42 REMARK 500 ASN A 132 58.83 32.13 REMARK 500 SER A 163 -148.17 47.51 REMARK 500 ALA A 164 31.88 73.87 REMARK 500 HIS A 269 64.88 71.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 320 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 CYS A 21 SG 110.5 REMARK 620 3 CYS A 24 SG 116.0 111.8 REMARK 620 4 ASN A 272 OD1 103.9 106.0 107.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XTO RELATED DB: PDB REMARK 900 THE SAME PROTEIN, BUT OTHER ISOFORM DBREF 3JXP A 1 303 UNP Q88QV5 PQQB_PSEPK 1 303 SEQADV 3JXP MET A -1 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP MET A 0 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP THR A 253 UNP Q88QV5 MET 253 ENGINEERED MUTATION SEQADV 3JXP LEU A 304 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP GLU A 305 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 306 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 307 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 308 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 309 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 310 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 311 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP LEU A 312 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP GLU A 313 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 314 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 315 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 316 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 317 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 318 UNP Q88QV5 EXPRESSION TAG SEQADV 3JXP HIS A 319 UNP Q88QV5 EXPRESSION TAG SEQRES 1 A 321 MET MET MET TYR ILE GLN VAL LEU GLY SER ALA ALA GLY SEQRES 2 A 321 GLY GLY PHE PRO GLN TRP ASN CYS ASN CYS VAL ASN CYS SEQRES 3 A 321 LYS GLY TYR ARG ASP GLY THR LEU LYS ALA THR ALA ARG SEQRES 4 A 321 THR GLN SER SER ILE ALA LEU SER ASP ASP GLY VAL HIS SEQRES 5 A 321 TRP ILE LEU CYS ASN ALA SER PRO ASP ILE ARG ALA GLN SEQRES 6 A 321 LEU GLN ALA PHE ALA PRO MET GLN PRO ALA ARG ALA LEU SEQRES 7 A 321 ARG ASP THR GLY ILE ASN ALA ILE VAL LEU LEU ASP SER SEQRES 8 A 321 GLN ILE ASP HIS THR THR GLY LEU LEU SER LEU ARG GLU SEQRES 9 A 321 GLY CYS PRO HIS GLN VAL TRP CYS THR ASP MET VAL HIS SEQRES 10 A 321 GLN ASP LEU THR THR GLY PHE PRO LEU PHE ASN MET LEU SEQRES 11 A 321 SER HIS TRP ASN GLY GLY LEU GLN TRP ASN ARG ILE GLU SEQRES 12 A 321 LEU GLU GLY SER PHE VAL ILE ASP ALA CYS PRO ASN LEU SEQRES 13 A 321 LYS PHE THR PRO PHE PRO LEU ARG SER ALA ALA PRO PRO SEQRES 14 A 321 TYR SER PRO HIS ARG PHE ASP PRO HIS PRO GLY ASP ASN SEQRES 15 A 321 LEU GLY LEU MET VAL GLU ASP THR ARG THR GLY GLY LYS SEQRES 16 A 321 LEU PHE TYR ALA PRO GLY LEU GLY GLN VAL ASP GLU LYS SEQRES 17 A 321 LEU LEU ALA MET MET HIS GLY ALA ASP CYS LEU LEU VAL SEQRES 18 A 321 ASP GLY THR LEU TRP GLU ASP ASP GLU MET GLN ARG ARG SEQRES 19 A 321 GLY VAL GLY THR ARG THR GLY ARG GLU MET GLY HIS LEU SEQRES 20 A 321 ALA GLN ASN GLY PRO GLY GLY THR LEU GLU VAL LEU ASP SEQRES 21 A 321 GLY PHE PRO ARG GLN ARG LYS VAL LEU ILE HIS ILE ASN SEQRES 22 A 321 ASN THR ASN PRO ILE LEU ASP GLU ASN SER PRO GLU ARG SEQRES 23 A 321 ALA GLU VAL LEU ARG ARG GLY VAL GLU VAL ALA PHE ASP SEQRES 24 A 321 GLY MET SER ILE GLU LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 25 A 321 HIS LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 320 1 HET CL A 321 1 HET CL A 322 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *174(H2 O) HELIX 1 1 CYS A 21 ASP A 29 1 9 HELIX 2 2 ASP A 59 ALA A 66 1 8 HELIX 3 3 PHE A 67 GLN A 71 5 5 HELIX 4 4 GLN A 90 THR A 95 1 6 HELIX 5 5 GLY A 96 CYS A 104 5 9 HELIX 6 6 THR A 111 LEU A 118 1 8 HELIX 7 7 PRO A 123 SER A 129 1 7 HELIX 8 8 ASP A 204 ALA A 214 1 11 HELIX 9 9 ASP A 227 GLY A 233 1 7 HELIX 10 10 GLY A 252 ASP A 258 1 7 HELIX 11 11 ASN A 274 ASP A 278 5 5 HELIX 12 12 SER A 281 ARG A 290 1 10 SHEET 1 A 7 LEU A 135 ARG A 139 0 SHEET 2 A 7 HIS A 106 CYS A 110 1 N HIS A 106 O GLN A 136 SHEET 3 A 7 ILE A 81 VAL A 85 1 N ILE A 84 O TRP A 109 SHEET 4 A 7 TRP A 51 CYS A 54 1 N LEU A 53 O VAL A 85 SHEET 5 A 7 SER A 41 SER A 45 -1 N ILE A 42 O CYS A 54 SHEET 6 A 7 MET A 1 GLY A 7 -1 N TYR A 2 O SER A 45 SHEET 7 A 7 SER A 300 LEU A 303 -1 O ILE A 301 N ILE A 3 SHEET 1 B 7 PHE A 146 VAL A 147 0 SHEET 2 B 7 LEU A 154 LEU A 161 -1 O PHE A 156 N PHE A 146 SHEET 3 B 7 ASN A 180 ASP A 187 -1 O MET A 184 N THR A 157 SHEET 4 B 7 LYS A 193 ALA A 197 -1 O TYR A 196 N LEU A 183 SHEET 5 B 7 CYS A 216 ASP A 220 1 O LEU A 218 N ALA A 197 SHEET 6 B 7 ARG A 264 ILE A 268 1 O ARG A 264 N LEU A 217 SHEET 7 B 7 VAL A 292 VAL A 294 1 O GLU A 293 N LEU A 267 LINK SG CYS A 19 ZN ZN A 320 1555 1555 2.27 LINK SG CYS A 21 ZN ZN A 320 1555 1555 2.43 LINK SG CYS A 24 ZN ZN A 320 1555 1555 2.28 LINK OD1 ASN A 272 ZN ZN A 320 1555 1555 2.10 CISPEP 1 PHE A 14 PRO A 15 0 -3.75 CISPEP 2 CYS A 104 PRO A 105 0 6.64 SITE 1 AC1 4 CYS A 19 CYS A 21 CYS A 24 ASN A 272 SITE 1 AC2 4 GLN A 90 ILE A 91 PRO A 166 HOH A 357 SITE 1 AC3 2 ASN A 18 HOH A 479 CRYST1 86.209 86.209 109.406 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009140 0.00000