data_3JXQ
# 
_entry.id   3JXQ 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   3JXQ         pdb_00003jxq 10.2210/pdb3jxq/pdb 
NDB   NA0193       ?            ?                   
RCSB  RCSB055291   ?            ?                   
WWPDB D_1000055291 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2010-02-09 
2 'Structure model' 1 1 2011-07-13 
3 'Structure model' 1 2 2024-02-21 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Data collection'           
3 3 'Structure model' 'Database references'       
4 3 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom 
2 3 'Structure model' chem_comp_bond 
3 3 'Structure model' database_2     
4 3 'Structure model' diffrn_source  
5 3 'Structure model' struct_conn    
6 3 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                 
2 3 'Structure model' '_database_2.pdbx_database_accession'  
3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 
4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'  
5 3 'Structure model' '_struct_site.pdbx_auth_asym_id'       
6 3 'Structure model' '_struct_site.pdbx_auth_comp_id'       
7 3 'Structure model' '_struct_site.pdbx_auth_seq_id'        
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        3JXQ 
_pdbx_database_status.recvd_initial_deposition_date   2009-09-21 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          3JXR 
_pdbx_database_related.details        . 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Adamiak, D.A.'  1 
'Milecki, J.'    2 
'Adamiak, R.W.'  3 
'Rypniewski, W.' 4 
# 
_citation.id                        primary 
_citation.title                     
'The hydration and unusual hydrogen bonding in the crystal structure of an RNA duplex containing alternating CG base pairs' 
_citation.journal_abbrev            'New J.Chem.' 
_citation.journal_volume            34 
_citation.page_first                903 
_citation.page_last                 909 
_citation.year                      2010 
_citation.journal_id_ASTM           ? 
_citation.country                   FR 
_citation.journal_id_ISSN           1144-0546 
_citation.journal_id_CSD            ? 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   ? 
_citation.pdbx_database_id_DOI      10.1039/b9nj00601j 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Adamiak, D.A.'  1 ? 
primary 'Milecki, J.'    2 ? 
primary 'Adamiak, R.W.'  3 ? 
primary 'Rypniewski, W.' 4 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'r[CGCG(5-fluoro)CG]2' 1924.195 4   ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'        24.305   4   ? ? ? ? 
3 water       nat water                  18.015   132 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       'CGCG(5CF)G' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGXG 
_entity_poly.pdbx_strand_id                 A,B,K,L 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION' MG  
3 water           HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 C   n 
1 2 G   n 
1 3 C   n 
1 4 G   n 
1 5 5CF n 
1 6 G   n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'This is a modification of a naturally occuring sequence' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
5CF 'RNA linking' . 
;5-fluorocytidine 5'-(dihydrogen phosphate)
;
? 'C9 H13 F N3 O8 P' 341.187 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"                  ? 'C9 H14 N3 O8 P'   323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"                 ? 'C10 H14 N5 O8 P'  363.221 
HOH non-polymer   . WATER                                        ? 'H2 O'             18.015  
MG  non-polymer   . 'MAGNESIUM ION'                              ? 'Mg 2'             24.305  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 C   1 1 1 C   C   A . n 
A 1 2 G   2 2 2 G   G   A . n 
A 1 3 C   3 3 3 C   C   A . n 
A 1 4 G   4 4 4 G   G   A . n 
A 1 5 5CF 5 5 5 5CF 5CF A . n 
A 1 6 G   6 6 6 G   G   A . n 
B 1 1 C   1 1 1 C   C   B . n 
B 1 2 G   2 2 2 G   G   B . n 
B 1 3 C   3 3 3 C   C   B . n 
B 1 4 G   4 4 4 G   G   B . n 
B 1 5 5CF 5 5 5 5CF 5CF B . n 
B 1 6 G   6 6 6 G   G   B . n 
C 1 1 C   1 1 1 C   C   K . n 
C 1 2 G   2 2 2 G   G   K . n 
C 1 3 C   3 3 3 C   C   K . n 
C 1 4 G   4 4 4 G   G   K . n 
C 1 5 5CF 5 5 5 5CF 5CF K . n 
C 1 6 G   6 6 6 G   G   K . n 
D 1 1 C   1 1 1 C   C   L . n 
D 1 2 G   2 2 2 G   G   L . n 
D 1 3 C   3 3 3 C   C   L . n 
D 1 4 G   4 4 4 G   G   L . n 
D 1 5 5CF 5 5 5 5CF 5CF L . n 
D 1 6 G   6 6 6 G   G   L . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
E 2 MG  1  7   4   MG  MG  A . 
F 2 MG  1  7   1   MG  MG  B . 
G 2 MG  1  7   2   MG  MG  K . 
H 2 MG  1  7   3   MG  MG  L . 
I 3 HOH 1  8   4   HOH HOH A . 
I 3 HOH 2  9   8   HOH HOH A . 
I 3 HOH 3  10  10  HOH HOH A . 
I 3 HOH 4  11  11  HOH HOH A . 
I 3 HOH 5  13  13  HOH HOH A . 
I 3 HOH 6  15  15  HOH HOH A . 
I 3 HOH 7  18  18  HOH HOH A . 
I 3 HOH 8  19  19  HOH HOH A . 
I 3 HOH 9  21  21  HOH HOH A . 
I 3 HOH 10 22  22  HOH HOH A . 
I 3 HOH 11 23  23  HOH HOH A . 
I 3 HOH 12 24  24  HOH HOH A . 
I 3 HOH 13 31  31  HOH HOH A . 
I 3 HOH 14 32  32  HOH HOH A . 
I 3 HOH 15 49  49  HOH HOH A . 
I 3 HOH 16 51  51  HOH HOH A . 
I 3 HOH 17 60  60  HOH HOH A . 
I 3 HOH 18 62  62  HOH HOH A . 
I 3 HOH 19 65  65  HOH HOH A . 
I 3 HOH 20 78  78  HOH HOH A . 
I 3 HOH 21 79  79  HOH HOH A . 
I 3 HOH 22 81  81  HOH HOH A . 
I 3 HOH 23 83  83  HOH HOH A . 
I 3 HOH 24 87  87  HOH HOH A . 
I 3 HOH 25 89  89  HOH HOH A . 
I 3 HOH 26 90  90  HOH HOH A . 
I 3 HOH 27 97  97  HOH HOH A . 
I 3 HOH 28 100 100 HOH HOH A . 
I 3 HOH 29 109 109 HOH HOH A . 
I 3 HOH 30 118 118 HOH HOH A . 
I 3 HOH 31 119 119 HOH HOH A . 
I 3 HOH 32 125 125 HOH HOH A . 
I 3 HOH 33 127 127 HOH HOH A . 
I 3 HOH 34 129 129 HOH HOH A . 
I 3 HOH 35 130 130 HOH HOH A . 
J 3 HOH 1  8   3   HOH HOH B . 
J 3 HOH 2  9   9   HOH HOH B . 
J 3 HOH 3  10  5   HOH HOH B . 
J 3 HOH 4  11  6   HOH HOH B . 
J 3 HOH 5  12  12  HOH HOH B . 
J 3 HOH 6  14  14  HOH HOH B . 
J 3 HOH 7  17  17  HOH HOH B . 
J 3 HOH 8  25  25  HOH HOH B . 
J 3 HOH 9  28  28  HOH HOH B . 
J 3 HOH 10 30  30  HOH HOH B . 
J 3 HOH 11 33  33  HOH HOH B . 
J 3 HOH 12 34  34  HOH HOH B . 
J 3 HOH 13 40  40  HOH HOH B . 
J 3 HOH 14 43  43  HOH HOH B . 
J 3 HOH 15 50  50  HOH HOH B . 
J 3 HOH 16 53  53  HOH HOH B . 
J 3 HOH 17 55  55  HOH HOH B . 
J 3 HOH 18 61  61  HOH HOH B . 
J 3 HOH 19 63  63  HOH HOH B . 
J 3 HOH 20 66  66  HOH HOH B . 
J 3 HOH 21 71  71  HOH HOH B . 
J 3 HOH 22 77  77  HOH HOH B . 
J 3 HOH 23 80  80  HOH HOH B . 
J 3 HOH 24 84  84  HOH HOH B . 
J 3 HOH 25 91  91  HOH HOH B . 
J 3 HOH 26 93  93  HOH HOH B . 
J 3 HOH 27 94  94  HOH HOH B . 
J 3 HOH 28 96  96  HOH HOH B . 
J 3 HOH 29 101 101 HOH HOH B . 
J 3 HOH 30 102 102 HOH HOH B . 
J 3 HOH 31 104 104 HOH HOH B . 
J 3 HOH 32 106 106 HOH HOH B . 
J 3 HOH 33 108 108 HOH HOH B . 
J 3 HOH 34 110 110 HOH HOH B . 
J 3 HOH 35 113 113 HOH HOH B . 
J 3 HOH 36 120 120 HOH HOH B . 
J 3 HOH 37 121 121 HOH HOH B . 
J 3 HOH 38 124 124 HOH HOH B . 
J 3 HOH 39 132 132 HOH HOH B . 
K 3 HOH 1  8   1   HOH HOH K . 
K 3 HOH 2  9   2   HOH HOH K . 
K 3 HOH 3  20  20  HOH HOH K . 
K 3 HOH 4  26  26  HOH HOH K . 
K 3 HOH 5  27  27  HOH HOH K . 
K 3 HOH 6  29  29  HOH HOH K . 
K 3 HOH 7  36  36  HOH HOH K . 
K 3 HOH 8  37  37  HOH HOH K . 
K 3 HOH 9  41  41  HOH HOH K . 
K 3 HOH 10 42  42  HOH HOH K . 
K 3 HOH 11 44  44  HOH HOH K . 
K 3 HOH 12 46  46  HOH HOH K . 
K 3 HOH 13 47  47  HOH HOH K . 
K 3 HOH 14 52  52  HOH HOH K . 
K 3 HOH 15 57  57  HOH HOH K . 
K 3 HOH 16 58  58  HOH HOH K . 
K 3 HOH 17 59  59  HOH HOH K . 
K 3 HOH 18 64  64  HOH HOH K . 
K 3 HOH 19 69  69  HOH HOH K . 
K 3 HOH 20 70  70  HOH HOH K . 
K 3 HOH 21 73  73  HOH HOH K . 
K 3 HOH 22 82  82  HOH HOH K . 
K 3 HOH 23 85  85  HOH HOH K . 
K 3 HOH 24 88  88  HOH HOH K . 
K 3 HOH 25 95  95  HOH HOH K . 
K 3 HOH 26 98  98  HOH HOH K . 
K 3 HOH 27 103 103 HOH HOH K . 
K 3 HOH 28 105 105 HOH HOH K . 
K 3 HOH 29 114 114 HOH HOH K . 
K 3 HOH 30 115 115 HOH HOH K . 
K 3 HOH 31 126 126 HOH HOH K . 
L 3 HOH 1  9   7   HOH HOH L . 
L 3 HOH 2  16  16  HOH HOH L . 
L 3 HOH 3  35  35  HOH HOH L . 
L 3 HOH 4  38  38  HOH HOH L . 
L 3 HOH 5  39  39  HOH HOH L . 
L 3 HOH 6  45  45  HOH HOH L . 
L 3 HOH 7  48  48  HOH HOH L . 
L 3 HOH 8  54  54  HOH HOH L . 
L 3 HOH 9  56  56  HOH HOH L . 
L 3 HOH 10 67  67  HOH HOH L . 
L 3 HOH 11 68  68  HOH HOH L . 
L 3 HOH 12 72  72  HOH HOH L . 
L 3 HOH 13 74  74  HOH HOH L . 
L 3 HOH 14 75  75  HOH HOH L . 
L 3 HOH 15 76  76  HOH HOH L . 
L 3 HOH 16 86  86  HOH HOH L . 
L 3 HOH 17 92  92  HOH HOH L . 
L 3 HOH 18 99  99  HOH HOH L . 
L 3 HOH 19 107 107 HOH HOH L . 
L 3 HOH 20 111 111 HOH HOH L . 
L 3 HOH 21 112 112 HOH HOH L . 
L 3 HOH 22 116 116 HOH HOH L . 
L 3 HOH 23 117 117 HOH HOH L . 
L 3 HOH 24 122 122 HOH HOH L . 
L 3 HOH 25 123 123 HOH HOH L . 
L 3 HOH 26 128 128 HOH HOH L . 
L 3 HOH 27 131 131 HOH HOH L . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
MAR345dtb 'data collection' .        ? 1 
MOLREP    phasing           .        ? 2 
REFMAC    refinement        5.2.0019 ? 3 
DENZO     'data reduction'  .        ? 4 
SCALEPACK 'data scaling'    .        ? 5 
# 
_cell.entry_id           3JXQ 
_cell.length_a           21.224 
_cell.length_b           26.486 
_cell.length_c           29.310 
_cell.angle_alpha        97.56 
_cell.angle_beta         105.47 
_cell.angle_gamma        109.38 
_cell.Z_PDB              4 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         3JXQ 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          3JXQ 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.89 
_exptl_crystal.density_percent_sol   34.86 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              5.6 
_exptl_crystal_grow.pdbx_details    
'2.0M lithium sulfate, 10mM magnesium chloride and 50mM MES, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'MAR scanner 345 mm plate' 
_diffrn_detector.pdbx_collection_date   2001-11-17 
_diffrn_detector.details                'Si(111)' 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'Si(111) channel' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.1000 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'EMBL/DESY, HAMBURG BEAMLINE BW7A' 
_diffrn_source.pdbx_synchrotron_site       'EMBL/DESY, HAMBURG' 
_diffrn_source.pdbx_synchrotron_beamline   BW7A 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.1000 
# 
_reflns.entry_id                     3JXQ 
_reflns.observed_criterion_sigma_I   0 
_reflns.observed_criterion_sigma_F   0 
_reflns.d_resolution_low             20 
_reflns.d_resolution_high            1.45 
_reflns.number_obs                   9439 
_reflns.number_all                   9439 
_reflns.percent_possible_obs         93.7 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              0.041 
_reflns.pdbx_netI_over_sigmaI        30 
_reflns.B_iso_Wilson_estimate        14 
_reflns.pdbx_redundancy              3.1 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.45 
_reflns_shell.d_res_low              1.47 
_reflns_shell.percent_possible_all   80 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        0.296 
_reflns_shell.meanI_over_sigI_obs    2.6 
_reflns_shell.pdbx_redundancy        2.2 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      409 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 3JXQ 
_refine.ls_number_reflns_obs                     9199 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             15.00 
_refine.ls_d_res_high                            1.45 
_refine.ls_percent_reflns_obs                    100.00 
_refine.ls_R_factor_obs                          0.17181 
_refine.ls_R_factor_all                          0.17181 
_refine.ls_R_factor_R_work                       0.17115 
_refine.ls_R_factor_R_free                       0.20517 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 1.9 
_refine.ls_number_reflns_R_free                  174 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.973 
_refine.correlation_coeff_Fo_to_Fc_free          0.948 
_refine.B_iso_mean                               20.307 
_refine.aniso_B[1][1]                            -0.25 
_refine.aniso_B[2][2]                            -0.47 
_refine.aniso_B[3][3]                            0.09 
_refine.aniso_B[1][2]                            -0.41 
_refine.aniso_B[1][3]                            -0.32 
_refine.aniso_B[2][3]                            -0.74 
_refine.solvent_model_details                    'BABINET MODEL WITH MASK' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.078 
_refine.pdbx_overall_ESU_R_Free                  0.079 
_refine.overall_SU_ML                            0.059 
_refine.overall_SU_B                             1.655 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        3JXQ 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             0.059 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   0.079 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      ? 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.pdbx_Luzzati_d_res_high_obs     ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   508 
_refine_hist.pdbx_number_atoms_ligand         4 
_refine_hist.number_atoms_solvent             132 
_refine_hist.number_atoms_total               644 
_refine_hist.d_res_high                       1.45 
_refine_hist.d_res_low                        15.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d         0.011 0.021 ? 567 'X-RAY DIFFRACTION' ? 
r_angle_refined_deg      2.022 3.000 ? 870 'X-RAY DIFFRACTION' ? 
r_chiral_restr           0.078 0.200 ? 116 'X-RAY DIFFRACTION' ? 
r_gen_planes_refined     0.011 0.020 ? 252 'X-RAY DIFFRACTION' ? 
r_nbd_refined            0.176 0.200 ? 195 'X-RAY DIFFRACTION' ? 
r_nbtor_refined          0.276 0.200 ? 364 'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined    0.113 0.200 ? 92  'X-RAY DIFFRACTION' ? 
r_metal_ion_refined      0.169 0.200 ? 3   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined   0.148 0.200 ? 47  'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined 0.130 0.200 ? 18  'X-RAY DIFFRACTION' ? 
r_scbond_it              2.479 7.000 ? 827 'X-RAY DIFFRACTION' ? 
r_scangle_it             3.098 9.000 ? 870 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.450 
_refine_ls_shell.d_res_low                        1.487 
_refine_ls_shell.number_reflns_R_work             596 
_refine_ls_shell.R_factor_R_work                  0.259 
_refine_ls_shell.percent_reflns_obs               100.00 
_refine_ls_shell.R_factor_R_free                  0.331 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             13 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                596 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_database_PDB_matrix.entry_id          3JXQ 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  3JXQ 
_struct.title                     'X-Ray structure of r[CGCG(5-fluoro)CG]2' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        3JXQ 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'RNA, double helix' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 1 ? 
D N N 1 ? 
E N N 2 ? 
F N N 2 ? 
G N N 2 ? 
H N N 2 ? 
I N N 3 ? 
J N N 3 ? 
K N N 3 ? 
L N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    3JXQ 
_struct_ref.pdbx_db_accession          3JXQ 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   CGCGXG 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 3JXQ A 1 ? 6 ? 3JXQ 1 ? 6 ? 1 6 
2 1 3JXQ B 1 ? 6 ? 3JXQ 1 ? 6 ? 1 6 
3 1 3JXQ K 1 ? 6 ? 3JXQ 1 ? 6 ? 1 6 
4 1 3JXQ L 1 ? 6 ? 3JXQ 1 ? 6 ? 1 6 
# 
loop_
_pdbx_struct_assembly.id 
_pdbx_struct_assembly.details 
_pdbx_struct_assembly.method_details 
_pdbx_struct_assembly.oligomeric_details 
_pdbx_struct_assembly.oligomeric_count 
1 author_defined_assembly ? dimeric 2 
2 author_defined_assembly ? dimeric 2 
# 
loop_
_pdbx_struct_assembly_gen.assembly_id 
_pdbx_struct_assembly_gen.oper_expression 
_pdbx_struct_assembly_gen.asym_id_list 
1 1 A,B,E,F,I,J 
2 1 C,D,G,H,K,L 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A G   4 "O3'" ? ? ? 1_555 A 5CF 5 P  ? ? A G   4 A 5CF 5 1_555 ? ? ? ? ? ? ?            1.598 ? ? 
covale2  covale one  ? A 5CF 5 "O3'" ? ? ? 1_555 A G   6 P  ? ? A 5CF 5 A G   6 1_555 ? ? ? ? ? ? ?            1.597 ? ? 
covale3  covale both ? B G   4 "O3'" ? ? ? 1_555 B 5CF 5 P  ? ? B G   4 B 5CF 5 1_555 ? ? ? ? ? ? ?            1.611 ? ? 
covale4  covale one  ? B 5CF 5 "O3'" ? ? ? 1_555 B G   6 P  ? ? B 5CF 5 B G   6 1_555 ? ? ? ? ? ? ?            1.625 ? ? 
covale5  covale both ? C G   4 "O3'" ? ? ? 1_555 C 5CF 5 P  ? ? K G   4 K 5CF 5 1_555 ? ? ? ? ? ? ?            1.600 ? ? 
covale6  covale one  ? C 5CF 5 "O3'" ? ? ? 1_555 C G   6 P  ? ? K 5CF 5 K G   6 1_555 ? ? ? ? ? ? ?            1.585 ? ? 
covale7  covale both ? D G   4 "O3'" ? ? ? 1_555 D 5CF 5 P  ? ? L G   4 L 5CF 5 1_555 ? ? ? ? ? ? ?            1.612 ? ? 
covale8  covale one  ? D 5CF 5 "O3'" ? ? ? 1_555 D G   6 P  ? ? L 5CF 5 L G   6 1_555 ? ? ? ? ? ? ?            1.597 ? ? 
hydrog1  hydrog ?    ? A C   1 N3    ? ? ? 1_555 B G   6 N1 ? ? A C   1 B G   6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A C   1 N4    ? ? ? 1_555 B G   6 O6 ? ? A C   1 B G   6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A C   1 O2    ? ? ? 1_555 B G   6 N2 ? ? A C   1 B G   6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A C   3 N3    ? ? ? 1_555 B G   4 N1 ? ? A C   3 B G   4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A C   3 N4    ? ? ? 1_555 B G   4 O6 ? ? A C   3 B G   4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A C   3 O2    ? ? ? 1_555 B G   4 N2 ? ? A C   3 B G   4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A G   4 N1    ? ? ? 1_555 B C   3 N3 ? ? A G   4 B C   3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A G   4 N2    ? ? ? 1_555 B C   3 O2 ? ? A G   4 B C   3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A G   4 O6    ? ? ? 1_555 B C   3 N4 ? ? A G   4 B C   3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A G   6 N1    ? ? ? 1_555 B C   1 N3 ? ? A G   6 B C   1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A G   6 N2    ? ? ? 1_555 B C   1 O2 ? ? A G   6 B C   1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A G   6 O6    ? ? ? 1_555 B C   1 N4 ? ? A G   6 B C   1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? C C   1 N3    ? ? ? 1_555 D G   6 N1 ? ? K C   1 L G   6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? C C   1 N4    ? ? ? 1_555 D G   6 O6 ? ? K C   1 L G   6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? C C   1 O2    ? ? ? 1_555 D G   6 N2 ? ? K C   1 L G   6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? C C   3 N3    ? ? ? 1_555 D G   4 N1 ? ? K C   3 L G   4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? C C   3 N4    ? ? ? 1_555 D G   4 O6 ? ? K C   3 L G   4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? C C   3 O2    ? ? ? 1_555 D G   4 N2 ? ? K C   3 L G   4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? C G   4 N1    ? ? ? 1_555 D C   3 N3 ? ? K G   4 L C   3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? C G   4 N2    ? ? ? 1_555 D C   3 O2 ? ? K G   4 L C   3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? C G   4 O6    ? ? ? 1_555 D C   3 N4 ? ? K G   4 L C   3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? C G   6 N1    ? ? ? 1_555 D C   1 N3 ? ? K G   6 L C   1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? C G   6 N2    ? ? ? 1_555 D C   1 O2 ? ? K G   6 L C   1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? C G   6 O6    ? ? ? 1_555 D C   1 N4 ? ? K G   6 L C   1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A MG 7 ? 4 'BINDING SITE FOR RESIDUE MG A 7' 
AC2 Software B MG 7 ? 6 'BINDING SITE FOR RESIDUE MG B 7' 
AC3 Software K MG 7 ? 5 'BINDING SITE FOR RESIDUE MG K 7' 
AC4 Software L MG 7 ? 5 'BINDING SITE FOR RESIDUE MG L 7' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 4 HOH I . ? HOH A 18  . ? 1_555 ? 
2  AC1 4 HOH I . ? HOH A 109 . ? 1_555 ? 
3  AC1 4 HOH I . ? HOH A 118 . ? 1_555 ? 
4  AC1 4 HOH I . ? HOH A 119 . ? 1_555 ? 
5  AC2 6 HOH J . ? HOH B 10  . ? 1_555 ? 
6  AC2 6 HOH J . ? HOH B 71  . ? 1_555 ? 
7  AC2 6 HOH J . ? HOH B 108 . ? 1_555 ? 
8  AC2 6 HOH J . ? HOH B 120 . ? 1_555 ? 
9  AC2 6 HOH J . ? HOH B 121 . ? 1_555 ? 
10 AC2 6 HOH J . ? HOH B 132 . ? 1_555 ? 
11 AC3 5 HOH J . ? HOH B 53  . ? 1_555 ? 
12 AC3 5 HOH J . ? HOH B 94  . ? 1_555 ? 
13 AC3 5 HOH J . ? HOH B 96  . ? 1_555 ? 
14 AC3 5 HOH K . ? HOH K 41  . ? 1_555 ? 
15 AC3 5 HOH K . ? HOH K 115 . ? 1_555 ? 
16 AC4 5 G   D 6 ? G   L 6   . ? 1_555 ? 
17 AC4 5 HOH L . ? HOH L 112 . ? 1_555 ? 
18 AC4 5 HOH L . ? HOH L 116 . ? 1_555 ? 
19 AC4 5 HOH L . ? HOH L 122 . ? 1_555 ? 
20 AC4 5 HOH L . ? HOH L 123 . ? 1_555 ? 
# 
_pdbx_validate_rmsd_angle.id                         1 
_pdbx_validate_rmsd_angle.PDB_model_num              1 
_pdbx_validate_rmsd_angle.auth_atom_id_1             "O5'" 
_pdbx_validate_rmsd_angle.auth_asym_id_1             A 
_pdbx_validate_rmsd_angle.auth_comp_id_1             G 
_pdbx_validate_rmsd_angle.auth_seq_id_1              4 
_pdbx_validate_rmsd_angle.PDB_ins_code_1             ? 
_pdbx_validate_rmsd_angle.label_alt_id_1             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_2             P 
_pdbx_validate_rmsd_angle.auth_asym_id_2             A 
_pdbx_validate_rmsd_angle.auth_comp_id_2             G 
_pdbx_validate_rmsd_angle.auth_seq_id_2              4 
_pdbx_validate_rmsd_angle.PDB_ins_code_2             ? 
_pdbx_validate_rmsd_angle.label_alt_id_2             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_3             OP2 
_pdbx_validate_rmsd_angle.auth_asym_id_3             A 
_pdbx_validate_rmsd_angle.auth_comp_id_3             G 
_pdbx_validate_rmsd_angle.auth_seq_id_3              4 
_pdbx_validate_rmsd_angle.PDB_ins_code_3             ? 
_pdbx_validate_rmsd_angle.label_alt_id_3             ? 
_pdbx_validate_rmsd_angle.angle_value                97.26 
_pdbx_validate_rmsd_angle.angle_target_value         105.70 
_pdbx_validate_rmsd_angle.angle_deviation            -8.44 
_pdbx_validate_rmsd_angle.angle_standard_deviation   0.90 
_pdbx_validate_rmsd_angle.linker_flag                N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
5CF OP3    O  N N 1   
5CF P      P  N N 2   
5CF N1     N  N N 3   
5CF C2     C  N N 4   
5CF O2     O  N N 5   
5CF N3     N  N N 6   
5CF C4     C  N N 7   
5CF N4     N  N N 8   
5CF C5     C  N N 9   
5CF F5     F  N N 10  
5CF C6     C  N N 11  
5CF "C1'"  C  N R 12  
5CF "C2'"  C  N R 13  
5CF "O2'"  O  N N 14  
5CF "C3'"  C  N S 15  
5CF "O3'"  O  N N 16  
5CF "C4'"  C  N R 17  
5CF "O4'"  O  N N 18  
5CF "C5'"  C  N N 19  
5CF "O5'"  O  N N 20  
5CF OP1    O  N N 21  
5CF OP2    O  N N 22  
5CF HOP3   H  N N 23  
5CF HN4    H  N N 24  
5CF HN4A   H  N N 25  
5CF H6     H  N N 26  
5CF "H1'"  H  N N 27  
5CF "H2'"  H  N N 28  
5CF "HO2'" H  N N 29  
5CF "H3'"  H  N N 30  
5CF "HO3'" H  N N 31  
5CF "H4'"  H  N N 32  
5CF "H5'"  H  N N 33  
5CF "H5'A" H  N N 34  
5CF HOP1   H  N N 35  
C   OP3    O  N N 36  
C   P      P  N N 37  
C   OP1    O  N N 38  
C   OP2    O  N N 39  
C   "O5'"  O  N N 40  
C   "C5'"  C  N N 41  
C   "C4'"  C  N R 42  
C   "O4'"  O  N N 43  
C   "C3'"  C  N S 44  
C   "O3'"  O  N N 45  
C   "C2'"  C  N R 46  
C   "O2'"  O  N N 47  
C   "C1'"  C  N R 48  
C   N1     N  N N 49  
C   C2     C  N N 50  
C   O2     O  N N 51  
C   N3     N  N N 52  
C   C4     C  N N 53  
C   N4     N  N N 54  
C   C5     C  N N 55  
C   C6     C  N N 56  
C   HOP3   H  N N 57  
C   HOP2   H  N N 58  
C   "H5'"  H  N N 59  
C   "H5''" H  N N 60  
C   "H4'"  H  N N 61  
C   "H3'"  H  N N 62  
C   "HO3'" H  N N 63  
C   "H2'"  H  N N 64  
C   "HO2'" H  N N 65  
C   "H1'"  H  N N 66  
C   H41    H  N N 67  
C   H42    H  N N 68  
C   H5     H  N N 69  
C   H6     H  N N 70  
G   OP3    O  N N 71  
G   P      P  N N 72  
G   OP1    O  N N 73  
G   OP2    O  N N 74  
G   "O5'"  O  N N 75  
G   "C5'"  C  N N 76  
G   "C4'"  C  N R 77  
G   "O4'"  O  N N 78  
G   "C3'"  C  N S 79  
G   "O3'"  O  N N 80  
G   "C2'"  C  N R 81  
G   "O2'"  O  N N 82  
G   "C1'"  C  N R 83  
G   N9     N  Y N 84  
G   C8     C  Y N 85  
G   N7     N  Y N 86  
G   C5     C  Y N 87  
G   C6     C  N N 88  
G   O6     O  N N 89  
G   N1     N  N N 90  
G   C2     C  N N 91  
G   N2     N  N N 92  
G   N3     N  N N 93  
G   C4     C  Y N 94  
G   HOP3   H  N N 95  
G   HOP2   H  N N 96  
G   "H5'"  H  N N 97  
G   "H5''" H  N N 98  
G   "H4'"  H  N N 99  
G   "H3'"  H  N N 100 
G   "HO3'" H  N N 101 
G   "H2'"  H  N N 102 
G   "HO2'" H  N N 103 
G   "H1'"  H  N N 104 
G   H8     H  N N 105 
G   H1     H  N N 106 
G   H21    H  N N 107 
G   H22    H  N N 108 
HOH O      O  N N 109 
HOH H1     H  N N 110 
HOH H2     H  N N 111 
MG  MG     MG N N 112 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5CF P     OP3    sing N N 1   
5CF OP3   HOP3   sing N N 2   
5CF OP2   P      doub N N 3   
5CF OP1   P      sing N N 4   
5CF P     "O5'"  sing N N 5   
5CF C6    N1     sing N N 6   
5CF "C1'" N1     sing N N 7   
5CF N1    C2     sing N N 8   
5CF C2    N3     sing N N 9   
5CF C2    O2     doub N N 10  
5CF C4    N3     doub N N 11  
5CF C5    C4     sing N N 12  
5CF C4    N4     sing N N 13  
5CF N4    HN4    sing N N 14  
5CF N4    HN4A   sing N N 15  
5CF F5    C5     sing N N 16  
5CF C6    C5     doub N N 17  
5CF C6    H6     sing N N 18  
5CF "C2'" "C1'"  sing N N 19  
5CF "O4'" "C1'"  sing N N 20  
5CF "C1'" "H1'"  sing N N 21  
5CF "C3'" "C2'"  sing N N 22  
5CF "C2'" "O2'"  sing N N 23  
5CF "C2'" "H2'"  sing N N 24  
5CF "O2'" "HO2'" sing N N 25  
5CF "O3'" "C3'"  sing N N 26  
5CF "C3'" "C4'"  sing N N 27  
5CF "C3'" "H3'"  sing N N 28  
5CF "O3'" "HO3'" sing N N 29  
5CF "C5'" "C4'"  sing N N 30  
5CF "C4'" "O4'"  sing N N 31  
5CF "C4'" "H4'"  sing N N 32  
5CF "O5'" "C5'"  sing N N 33  
5CF "C5'" "H5'"  sing N N 34  
5CF "C5'" "H5'A" sing N N 35  
5CF OP1   HOP1   sing N N 36  
C   OP3   P      sing N N 37  
C   OP3   HOP3   sing N N 38  
C   P     OP1    doub N N 39  
C   P     OP2    sing N N 40  
C   P     "O5'"  sing N N 41  
C   OP2   HOP2   sing N N 42  
C   "O5'" "C5'"  sing N N 43  
C   "C5'" "C4'"  sing N N 44  
C   "C5'" "H5'"  sing N N 45  
C   "C5'" "H5''" sing N N 46  
C   "C4'" "O4'"  sing N N 47  
C   "C4'" "C3'"  sing N N 48  
C   "C4'" "H4'"  sing N N 49  
C   "O4'" "C1'"  sing N N 50  
C   "C3'" "O3'"  sing N N 51  
C   "C3'" "C2'"  sing N N 52  
C   "C3'" "H3'"  sing N N 53  
C   "O3'" "HO3'" sing N N 54  
C   "C2'" "O2'"  sing N N 55  
C   "C2'" "C1'"  sing N N 56  
C   "C2'" "H2'"  sing N N 57  
C   "O2'" "HO2'" sing N N 58  
C   "C1'" N1     sing N N 59  
C   "C1'" "H1'"  sing N N 60  
C   N1    C2     sing N N 61  
C   N1    C6     sing N N 62  
C   C2    O2     doub N N 63  
C   C2    N3     sing N N 64  
C   N3    C4     doub N N 65  
C   C4    N4     sing N N 66  
C   C4    C5     sing N N 67  
C   N4    H41    sing N N 68  
C   N4    H42    sing N N 69  
C   C5    C6     doub N N 70  
C   C5    H5     sing N N 71  
C   C6    H6     sing N N 72  
G   OP3   P      sing N N 73  
G   OP3   HOP3   sing N N 74  
G   P     OP1    doub N N 75  
G   P     OP2    sing N N 76  
G   P     "O5'"  sing N N 77  
G   OP2   HOP2   sing N N 78  
G   "O5'" "C5'"  sing N N 79  
G   "C5'" "C4'"  sing N N 80  
G   "C5'" "H5'"  sing N N 81  
G   "C5'" "H5''" sing N N 82  
G   "C4'" "O4'"  sing N N 83  
G   "C4'" "C3'"  sing N N 84  
G   "C4'" "H4'"  sing N N 85  
G   "O4'" "C1'"  sing N N 86  
G   "C3'" "O3'"  sing N N 87  
G   "C3'" "C2'"  sing N N 88  
G   "C3'" "H3'"  sing N N 89  
G   "O3'" "HO3'" sing N N 90  
G   "C2'" "O2'"  sing N N 91  
G   "C2'" "C1'"  sing N N 92  
G   "C2'" "H2'"  sing N N 93  
G   "O2'" "HO2'" sing N N 94  
G   "C1'" N9     sing N N 95  
G   "C1'" "H1'"  sing N N 96  
G   N9    C8     sing Y N 97  
G   N9    C4     sing Y N 98  
G   C8    N7     doub Y N 99  
G   C8    H8     sing N N 100 
G   N7    C5     sing Y N 101 
G   C5    C6     sing N N 102 
G   C5    C4     doub Y N 103 
G   C6    O6     doub N N 104 
G   C6    N1     sing N N 105 
G   N1    C2     sing N N 106 
G   N1    H1     sing N N 107 
G   C2    N2     sing N N 108 
G   C2    N3     doub N N 109 
G   N2    H21    sing N N 110 
G   N2    H22    sing N N 111 
G   N3    C4     sing N N 112 
HOH O     H1     sing N N 113 
HOH O     H2     sing N N 114 
# 
_ndb_struct_conf_na.entry_id   3JXQ 
_ndb_struct_conf_na.feature    'double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 6 1_555 B C 1 1_555 -0.060 -0.130 -0.075 -2.884 -7.239  -1.060 1 A_G6:C1_B A 6 ? B 1 ? 19 1 
1 A G 4 1_555 B C 3 1_555 -0.287 -0.157 0.145  -0.779 -10.413 -1.164 2 A_G4:C3_B A 4 ? B 3 ? 19 1 
1 A C 3 1_555 B G 4 1_555 0.174  -0.145 0.092  -0.627 -9.767  -2.015 3 A_C3:G4_B A 3 ? B 4 ? 19 1 
1 B G 6 1_555 A C 1 1_555 -0.096 -0.232 0.036  3.506  -9.389  1.680  4 B_G6:C1_A B 6 ? A 1 ? 19 1 
1 D C 1 1_555 C G 6 1_555 0.098  -0.157 0.089  2.603  -15.342 -0.217 5 L_C1:G6_K L 1 ? K 6 ? 19 1 
1 D C 3 1_555 C G 4 1_555 0.204  -0.113 0.018  2.460  -10.578 0.161  6 L_C3:G4_K L 3 ? K 4 ? 19 1 
1 D G 4 1_555 C C 3 1_555 -0.252 -0.222 0.018  -0.695 -11.027 0.585  7 L_G4:C3_K L 4 ? K 3 ? 19 1 
1 D G 6 1_555 C C 1 1_555 -0.231 -0.156 -0.005 -5.882 -7.692  0.138  8 L_G6:C1_K L 6 ? K 1 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 6 1_555 B C 1 1_555 A G 4 1_555 B C 3 1_555 -0.107 2.863  -6.323 0.562   -14.209 -67.356 -3.519 -0.134 -5.694 12.667  0.501 
-68.667 1 AA_G6G4:C3C1_BB A 6 ? B 1 ? A 4 ? B 3 ? 
1 A G 4 1_555 B C 3 1_555 A C 3 1_555 B G 4 1_555 -0.965 1.808  -3.142 -1.046  -11.489 -27.256 -5.638 -1.701 -2.247 23.110  -2.104 
-29.554 2 AA_G4C3:G4C3_BB A 4 ? B 3 ? A 3 ? B 4 ? 
1 A C 3 1_555 B G 4 1_555 B G 6 1_555 A C 1 1_555 -0.601 -7.019 1.049  141.166 -86.450 174.329 -3.495 0.324  1.203  -43.229 
-70.590 179.286 3 AB_C3G6:C1G4_AB A 3 ? B 4 ? B 6 ? A 1 ? 
1 B G 6 1_555 A C 1 1_555 D C 1 1_555 C G 6 1_555 1.101  -1.257 3.155  -0.165  5.215   52.023  -1.753 -1.260 3.021  5.928   0.187 
52.266  4 BL_G6C1:G6C1_KA B 6 ? A 1 ? L 1 ? K 6 ? 
1 D C 1 1_555 C G 6 1_555 D C 3 1_555 C G 4 1_555 0.547  -2.578 6.169  5.325   21.918  63.229  -3.895 -0.121 5.160  20.239  -4.917 
66.737  5 LL_C1C3:G4G6_KK L 1 ? K 6 ? L 3 ? K 4 ? 
1 D C 3 1_555 C G 4 1_555 D G 4 1_555 C C 3 1_555 0.621  -2.240 3.263  0.827   9.167   23.281  -7.554 -1.219 2.252  21.661  -1.954 
25.012  6 LL_C3G4:C3G4_KK L 3 ? K 4 ? L 4 ? K 3 ? 
1 D G 4 1_555 C C 3 1_555 D G 6 1_555 C C 1 1_555 -0.927 -3.508 6.476  -2.786  10.271  65.174  -4.019 0.636  5.957  9.469   2.568 
65.943  7 LL_G4G6:C1C3_KK L 4 ? K 3 ? L 6 ? K 1 ? 
# 
_atom_sites.entry_id                    3JXQ 
_atom_sites.fract_transf_matrix[1][1]   0.047116 
_atom_sites.fract_transf_matrix[1][2]   0.016571 
_atom_sites.fract_transf_matrix[1][3]   0.017574 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.040023 
_atom_sites.fract_transf_matrix[2][3]   0.009985 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.036486 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
F  
MG 
N  
O  
P  
# 
loop_